Wall clock time and date at job start Mon Mar 30 2020 04:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 N 1.46903 * 109.46748 * 119.99552 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46898 * 109.47006 * 180.02562 * 6 5 4 8 8 C 1.46846 * 111.00018 * 294.20961 * 7 6 5 9 9 C 1.53033 * 109.52460 * 174.16134 * 8 7 6 10 10 C 1.53124 * 109.27811 * 59.18358 * 9 8 7 11 11 C 1.50696 * 109.57409 * 182.41121 * 10 9 8 12 12 H 1.07998 * 120.00145 * 119.71641 * 11 10 9 13 13 C 1.37873 * 119.99794 * 299.70905 * 11 10 9 14 14 N 1.31521 * 119.99808 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00294 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47299 * 89.99819 * 15 13 11 17 17 H 1.48504 * 109.47531 * 209.99815 * 15 13 11 18 18 H 1.48500 * 109.47419 * 329.99871 * 15 13 11 19 19 C 1.53125 * 109.15751 * 302.34732 * 10 9 8 20 20 C 1.46851 * 110.99682 * 170.00115 * 7 6 5 21 21 H 1.08995 * 109.47200 * 300.00264 * 1 2 3 22 22 H 1.09004 * 109.46732 * 60.00547 * 1 2 3 23 23 H 1.08996 * 109.46768 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47566 * 240.00070 * 2 1 3 25 25 H 1.08999 * 109.47324 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46988 * 299.99876 * 3 2 1 27 27 H 1.09003 * 109.47265 * 59.99566 * 3 2 1 28 28 H 1.00906 * 110.99345 * 208.95640 * 4 2 1 29 29 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 30 30 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 31 31 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 32 32 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 33 33 H 1.09002 * 109.46555 * 294.18280 * 8 7 6 34 34 H 1.09001 * 109.46296 * 54.14881 * 8 7 6 35 35 H 1.08997 * 109.50475 * 299.23909 * 9 8 7 36 36 H 1.09002 * 109.50799 * 179.12007 * 9 8 7 37 37 H 1.08994 * 109.52258 * 62.24925 * 10 9 8 38 38 H 0.96999 * 120.00156 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.50073 * 297.71107 * 19 10 9 40 40 H 1.08991 * 109.50379 * 177.59621 * 19 10 9 41 41 H 1.08989 * 109.46428 * 305.85572 * 20 7 6 42 42 H 1.09002 * 109.45912 * 65.83533 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9808 6 6 2.5962 -2.8288 2.2488 7 7 2.6596 -4.2800 2.0298 8 6 1.3164 -4.8430 1.8418 9 6 1.4297 -6.3239 1.4731 10 6 2.1636 -7.0687 2.5918 11 6 2.3311 -8.5166 2.2090 12 1 3.3203 -8.9414 2.1228 13 6 1.2215 -9.2990 1.9690 14 7 1.3677 -10.5627 1.6354 15 14 -0.4894 -8.5642 2.1175 16 1 -0.9050 -8.0081 0.8048 17 1 -1.4473 -9.6200 2.5335 18 1 -0.4762 -7.4801 3.1324 19 6 3.5404 -6.4319 2.8003 20 6 3.3660 -4.9478 3.1305 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 2.9173 -0.3305 1.4848 29 1 2.7589 -2.3574 0.1532 30 1 1.0871 -2.5186 0.7427 31 1 3.5916 -2.4537 2.4865 32 1 1.9200 -2.6150 3.0766 33 1 0.7473 -4.7412 2.7659 34 1 0.8069 -4.3073 1.0408 35 1 1.9868 -6.4256 0.5418 36 1 0.4321 -6.7454 1.3490 37 1 1.5871 -7.0001 3.5143 38 1 0.5871 -11.1131 1.4662 39 1 4.1308 -6.5352 1.8899 40 1 4.0509 -6.9304 3.6242 41 1 4.3451 -4.4883 3.2654 42 1 2.7872 -4.8457 4.0484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380345974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:45 Heat of formation + Delta-G solvation = -8.816426 kcal Electronic energy + Delta-G solvation = -17819.928752 eV Core-core repulsion = 15220.158280 eV Total energy + Delta-G solvation = -2599.770473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.74245 -37.32723 -34.32735 -32.29233 -31.03126 -30.20440 -27.63847 -27.31886 -25.01434 -22.69968 -22.03808 -20.80759 -20.53933 -18.80720 -16.66478 -16.24635 -15.86738 -15.17753 -14.77215 -14.51918 -13.99821 -13.72344 -13.49971 -13.07531 -12.84913 -12.70846 -12.39443 -12.29300 -12.11399 -11.87487 -11.65964 -11.39337 -11.26693 -11.03097 -10.85564 -10.73303 -10.51503 -10.03924 -9.85529 -9.57342 -9.03445 -8.88643 -8.57381 -8.48097 -7.92235 -6.03058 -4.01159 3.29337 3.39734 3.41955 3.79594 4.44563 4.51052 4.71343 4.80187 5.05150 5.12535 5.27149 5.28754 5.42419 5.52130 5.59360 5.61503 5.64715 5.66640 5.72350 5.81798 5.90062 5.91671 5.99426 6.06721 6.12590 6.15136 6.23390 6.40589 6.48286 6.77815 6.84173 6.92087 6.97662 7.23387 7.26071 7.47700 7.56321 7.68192 7.83317 8.58146 9.01693 9.60200 11.10546 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.005031 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.663686 B = 5564.673527 C = 6105.350367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 C -0.153 4.153 4 N -0.688 5.688 5 C 0.061 3.939 6 C 0.058 3.942 7 N -0.535 5.535 8 C 0.054 3.946 9 C -0.116 4.116 10 C 0.013 3.987 11 C -0.509 4.509 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.267 1.267 19 C -0.096 4.096 20 C 0.058 3.942 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.339 0.661 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 21.199 -1.446 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.211 4.211 4 N -0.321 5.321 5 C -0.069 4.069 6 C -0.071 4.071 7 N -0.260 5.260 8 C -0.074 4.074 9 C -0.154 4.154 10 C -0.006 4.006 11 C -0.547 4.547 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.226 1.226 18 H -0.192 1.192 19 C -0.134 4.134 20 C -0.069 4.069 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.156 0.844 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.123 20.918 -1.621 20.981 hybrid contribution -0.736 0.315 0.136 0.811 sum -0.612 21.232 -1.485 21.293 Atomic orbital electron populations 1.21796 0.94589 1.01989 1.01469 1.21491 0.96140 0.94078 0.91467 1.21971 1.00719 0.95923 1.02482 1.60495 1.33170 1.03979 1.34417 1.22005 1.01211 0.86547 0.97088 1.21966 1.00274 0.88530 0.96297 1.61876 1.18586 1.01851 1.43686 1.22235 0.88533 0.97449 0.99144 1.22014 1.00053 0.91526 1.01790 1.19184 0.92360 0.95293 0.93778 1.21073 0.94844 0.92438 1.46362 0.90877 1.25027 0.98991 0.94688 0.94616 1.69907 1.30142 1.06400 1.47795 0.86848 0.84622 0.78183 0.78569 1.20587 1.22601 1.19241 1.21494 0.99440 0.91343 1.01115 1.22167 0.97031 0.96689 0.91034 0.92094 0.92746 0.92728 0.93874 0.92808 0.92005 0.91795 0.84355 0.94297 0.90837 0.91433 0.94514 0.95664 0.91907 0.91331 0.93470 0.96075 0.92770 0.91835 0.92373 0.91918 0.95596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.42 37.16 0.35 -0.98 16 2 C 0.08 0.73 3.22 -67.71 -0.22 0.52 16 3 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 4 N -0.69 -7.28 6.31 -106.72 -0.67 -7.96 16 5 C 0.06 0.76 5.41 -3.82 -0.02 0.73 16 6 C 0.06 0.79 5.22 -3.82 -0.02 0.77 16 7 N -0.53 -8.95 4.66 -234.67 -1.09 -10.05 16 8 C 0.05 0.99 5.29 -3.84 -0.02 0.97 16 9 C -0.12 -2.56 4.84 -26.65 -0.13 -2.69 16 10 C 0.01 0.30 1.75 -91.64 -0.16 0.14 16 11 C -0.51 -14.47 9.15 -34.44 -0.32 -14.79 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 15 Si 0.89 22.34 24.36 -169.99 -4.14 18.20 16 16 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 17 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.27 -6.48 6.53 56.52 0.37 -6.12 16 19 C -0.10 -1.94 5.32 -26.65 -0.14 -2.09 16 20 C 0.06 0.99 5.46 -3.83 -0.02 0.97 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.57 7.45 -51.93 -0.39 0.19 16 24 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 25 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.34 3.15 8.35 -39.29 -0.33 2.82 16 29 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.07 0.99 5.72 -51.93 -0.30 0.70 16 31 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 32 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.05 6.21 -51.93 -0.32 0.73 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.05 1.09 3.38 -51.93 -0.18 0.92 16 37 H 0.02 0.52 7.19 -51.93 -0.37 0.15 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.93 8.01 -51.94 -0.42 0.51 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -29.97 315.51 -8.62 -38.59 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.79 Total: -0.92 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.45 Total: -15.35 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.99 Total: -45.27 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.97 -8.62 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.770 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds