Wall clock time and date at job start Mon Mar 30 2020 04:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 N 1.46903 * 109.46748 * 119.99552 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46898 * 109.47006 * 180.02562 * 6 5 4 8 8 C 1.46846 * 111.00018 * 294.20961 * 7 6 5 9 9 C 1.53033 * 109.52460 * 174.16134 * 8 7 6 10 10 C 1.53124 * 109.27811 * 59.18358 * 9 8 7 11 11 C 1.50696 * 109.57409 * 182.41121 * 10 9 8 12 12 H 1.07998 * 120.00145 * 119.71641 * 11 10 9 13 13 C 1.37873 * 119.99794 * 299.70905 * 11 10 9 14 14 N 1.31521 * 119.99808 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00294 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47299 * 89.99819 * 15 13 11 17 17 H 1.48504 * 109.47531 * 209.99815 * 15 13 11 18 18 H 1.48500 * 109.47419 * 329.99871 * 15 13 11 19 19 C 1.53125 * 109.15751 * 302.34732 * 10 9 8 20 20 C 1.46851 * 110.99682 * 170.00115 * 7 6 5 21 21 H 1.08995 * 109.47200 * 300.00264 * 1 2 3 22 22 H 1.09004 * 109.46732 * 60.00547 * 1 2 3 23 23 H 1.08996 * 109.46768 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47566 * 240.00070 * 2 1 3 25 25 H 1.08999 * 109.47324 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46988 * 299.99876 * 3 2 1 27 27 H 1.09003 * 109.47265 * 59.99566 * 3 2 1 28 28 H 1.00906 * 110.99345 * 208.95640 * 4 2 1 29 29 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 30 30 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 31 31 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 32 32 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 33 33 H 1.09002 * 109.46555 * 294.18280 * 8 7 6 34 34 H 1.09001 * 109.46296 * 54.14881 * 8 7 6 35 35 H 1.08997 * 109.50475 * 299.23909 * 9 8 7 36 36 H 1.09002 * 109.50799 * 179.12007 * 9 8 7 37 37 H 1.08994 * 109.52258 * 62.24925 * 10 9 8 38 38 H 0.96999 * 120.00156 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.50073 * 297.71107 * 19 10 9 40 40 H 1.08991 * 109.50379 * 177.59621 * 19 10 9 41 41 H 1.08989 * 109.46428 * 305.85572 * 20 7 6 42 42 H 1.09002 * 109.45912 * 65.83533 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9808 6 6 2.5962 -2.8288 2.2488 7 7 2.6596 -4.2800 2.0298 8 6 1.3164 -4.8430 1.8418 9 6 1.4297 -6.3239 1.4731 10 6 2.1636 -7.0687 2.5918 11 6 2.3311 -8.5166 2.2090 12 1 3.3203 -8.9414 2.1228 13 6 1.2215 -9.2990 1.9690 14 7 1.3677 -10.5627 1.6354 15 14 -0.4894 -8.5642 2.1175 16 1 -0.9050 -8.0081 0.8048 17 1 -1.4473 -9.6200 2.5335 18 1 -0.4762 -7.4801 3.1324 19 6 3.5404 -6.4319 2.8003 20 6 3.3660 -4.9478 3.1305 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 2.9173 -0.3305 1.4848 29 1 2.7589 -2.3574 0.1532 30 1 1.0871 -2.5186 0.7427 31 1 3.5916 -2.4537 2.4865 32 1 1.9200 -2.6150 3.0766 33 1 0.7473 -4.7412 2.7659 34 1 0.8069 -4.3073 1.0408 35 1 1.9868 -6.4256 0.5418 36 1 0.4321 -6.7454 1.3490 37 1 1.5871 -7.0001 3.5143 38 1 0.5871 -11.1131 1.4662 39 1 4.1308 -6.5352 1.8899 40 1 4.0509 -6.9304 3.6242 41 1 4.3451 -4.4883 3.2654 42 1 2.7872 -4.8457 4.0484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380345974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:45 Heat of formation + Delta-G solvation = -30.284369 kcal Electronic energy + Delta-G solvation = -17820.859672 eV Core-core repulsion = 15220.158280 eV Total energy + Delta-G solvation = -2600.701392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12973 -38.25319 -35.92076 -34.02045 -32.39312 -31.72145 -28.90304 -28.11330 -26.58277 -24.22735 -23.59366 -21.96221 -21.42817 -20.48163 -18.83564 -17.41383 -16.93599 -16.45622 -16.06330 -15.74027 -15.21954 -15.16009 -14.89021 -14.78006 -14.46104 -13.97272 -13.48615 -13.36816 -13.19153 -13.14915 -12.89511 -12.69976 -12.39598 -12.31620 -12.15192 -11.99499 -11.84765 -11.68418 -11.65148 -11.33386 -10.97135 -10.79293 -10.60634 -9.40380 -9.22984 -8.30212 -6.33094 1.28490 1.33533 1.44191 2.31626 2.76274 3.05104 3.45116 3.88730 4.05806 4.10130 4.13122 4.19636 4.27244 4.36560 4.43694 4.45442 4.59408 4.63734 4.69525 4.78602 4.81946 4.85148 4.91214 4.95977 4.96951 4.98902 5.01096 5.12476 5.19040 5.26312 5.31514 5.39428 5.52478 5.67331 5.77251 6.04000 6.18434 6.25400 6.32866 6.52685 6.74067 7.32167 8.87047 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.005031 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.663686 B = 5564.673527 C = 6105.350367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.689 5.689 5 C 0.069 3.931 6 C 0.064 3.936 7 N -0.544 5.544 8 C 0.062 3.938 9 C -0.113 4.113 10 C 0.011 3.989 11 C -0.517 4.517 12 H 0.032 0.968 13 C 0.010 3.990 14 N -0.952 5.952 15 Si 0.950 3.050 16 H -0.265 1.265 17 H -0.298 1.298 18 H -0.250 1.250 19 C -0.093 4.093 20 C 0.066 3.934 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.347 0.653 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.016 0.984 38 H 0.265 0.735 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 24.390 -1.154 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.205 4.205 4 N -0.322 5.322 5 C -0.060 4.060 6 C -0.064 4.064 7 N -0.269 5.269 8 C -0.065 4.065 9 C -0.151 4.151 10 C -0.008 4.008 11 C -0.555 4.555 12 H 0.050 0.950 13 C -0.187 4.187 14 N -0.593 5.593 15 Si 0.778 3.222 16 H -0.191 1.191 17 H -0.226 1.226 18 H -0.174 1.174 19 C -0.131 4.131 20 C -0.061 4.061 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.446 24.144 -1.325 24.185 hybrid contribution -0.443 -0.716 0.030 0.843 sum -0.889 23.428 -1.295 23.481 Atomic orbital electron populations 1.21795 0.94708 1.01195 1.02051 1.21563 0.96072 0.95127 0.90721 1.21922 1.01136 0.94459 1.03000 1.60475 1.33812 1.02934 1.35023 1.21835 1.00232 0.87670 0.96295 1.21986 1.01469 0.86247 0.96721 1.61832 1.17551 1.03706 1.43827 1.22082 0.89761 0.94871 0.99826 1.21867 0.98740 0.94195 1.00324 1.19159 0.94774 0.92866 0.93993 1.21420 0.93138 0.95193 1.45726 0.94952 1.25897 1.03494 0.94932 0.94357 1.70058 1.31507 1.08104 1.49618 0.85812 0.79131 0.77733 0.79567 1.19146 1.22598 1.17413 1.21401 0.97059 0.94009 1.00610 1.22072 0.98778 0.94174 0.91118 0.92329 0.91389 0.94168 0.94459 0.92119 0.91003 0.91767 0.83358 0.94920 0.92003 0.89548 0.94559 0.95535 0.90040 0.92625 0.94509 0.96550 0.92618 0.93070 0.92448 0.89015 0.95131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.42 71.98 0.68 -1.68 16 2 C 0.07 1.23 3.22 44.92 0.14 1.38 16 3 C -0.15 -1.78 9.18 71.98 0.66 -1.12 16 4 N -0.69 -12.71 6.31 -491.56 -3.10 -15.81 16 5 C 0.07 1.54 5.41 86.31 0.47 2.01 16 6 C 0.06 1.51 5.22 86.31 0.45 1.96 16 7 N -0.54 -16.70 4.66 -896.37 -4.17 -20.88 16 8 C 0.06 2.14 5.29 86.32 0.46 2.59 16 9 C -0.11 -4.88 4.84 30.65 0.15 -4.73 16 10 C 0.01 0.52 1.75 -11.46 -0.02 0.50 16 11 C -0.52 -30.26 9.15 25.60 0.23 -30.02 16 12 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 13 C 0.01 0.58 5.45 84.65 0.46 1.04 16 14 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 15 Si 0.95 46.19 24.36 68.60 1.67 47.86 16 16 H -0.27 -12.25 6.89 99.48 0.69 -11.56 16 17 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.25 -11.35 6.53 99.48 0.65 -10.70 16 19 C -0.09 -3.70 5.32 30.65 0.16 -3.54 16 20 C 0.07 2.07 5.46 86.32 0.47 2.54 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.04 0.78 7.45 -2.39 -0.02 0.76 16 24 H 0.04 0.67 7.80 -2.39 -0.02 0.65 16 25 H 0.06 0.65 8.12 -2.39 -0.02 0.64 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.35 5.37 8.35 -89.69 -0.75 4.62 16 29 H 0.03 0.77 8.06 -2.39 -0.02 0.75 16 30 H 0.06 1.53 5.72 -2.39 -0.01 1.51 16 31 H 0.09 1.76 7.99 -2.39 -0.02 1.74 16 32 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 2.50 6.21 -2.39 -0.01 2.48 16 35 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.64 3.38 -2.39 -0.01 1.64 16 37 H 0.02 0.79 7.19 -2.39 -0.02 0.78 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.09 2.37 8.01 -2.39 -0.02 2.36 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.62 315.51 -0.85 -66.48 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.14 Total: 12.04 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.32 Total: -29.07 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -6.98 Total: -97.31 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -65.62 -0.85 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.191 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds