Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 H 1.09000 * 109.47115 * 303.89895 * 3 2 1 5 5 C 1.50694 * 109.47175 * 183.89638 * 3 2 1 6 6 H 1.07995 * 120.00363 * 240.00562 * 5 3 2 7 7 C 1.37884 * 119.99806 * 60.00424 * 5 3 2 8 8 N 1.31513 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47125 * 89.99628 * 9 7 5 11 11 H 1.48501 * 109.46815 * 209.99679 * 9 7 5 12 12 H 1.48500 * 109.46804 * 329.99453 * 9 7 5 13 13 N 1.46898 * 109.46687 * 63.89965 * 3 2 1 14 14 C 1.48533 * 110.99755 * 182.41349 * 13 3 2 15 15 C 1.54937 * 103.22794 * 200.27892 * 14 13 3 16 16 C 1.54598 * 102.92287 * 37.41035 * 15 14 13 17 17 H 1.09001 * 110.31072 * 96.95905 * 16 15 14 18 18 N 1.46893 * 110.31419 * 219.12978 * 16 15 14 19 19 C 1.46894 * 111.00530 * 200.51882 * 18 16 15 20 20 C 1.46909 * 110.99581 * 324.46852 * 18 16 15 21 21 C 1.47896 * 111.00326 * 65.01341 * 13 3 2 22 22 H 1.09005 * 110.07989 * 26.40168 * 21 13 3 23 23 C 1.52994 * 109.92223 * 265.19615 * 21 13 3 24 24 H 1.08992 * 109.47453 * 304.99306 * 1 2 3 25 25 H 1.09004 * 109.47428 * 64.99925 * 1 2 3 26 26 H 1.09001 * 109.47071 * 184.98794 * 1 2 3 27 27 H 1.08998 * 109.46864 * 240.00070 * 2 1 3 28 28 H 1.09003 * 109.47179 * 120.00423 * 2 1 3 29 29 H 0.97003 * 119.99803 * 180.02562 * 8 7 5 30 30 H 1.08993 * 110.67084 * 81.84433 * 14 13 3 31 31 H 1.08999 * 110.66754 * 318.71286 * 14 13 3 32 32 H 1.09001 * 110.72718 * 155.76687 * 15 14 13 33 33 H 1.09003 * 110.72471 * 279.05403 * 15 14 13 34 34 H 1.09004 * 109.47174 * 59.99312 * 19 18 16 35 35 H 1.08998 * 109.47905 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.46902 * 300.00018 * 19 18 16 37 37 H 1.09002 * 109.46800 * 71.88798 * 20 18 16 38 38 H 1.09003 * 109.46737 * 191.88880 * 20 18 16 39 39 H 1.08989 * 109.47137 * 311.89078 * 20 18 16 40 40 H 1.09007 * 109.47093 * 293.11346 * 23 21 13 41 41 H 1.09004 * 109.47175 * 53.11277 * 23 21 13 42 42 H 1.08996 * 109.47621 * 173.11404 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6207 1.9761 -0.8530 5 6 3.5438 1.4437 -0.0965 6 1 4.1350 1.8931 0.6876 7 6 4.1651 0.8708 -1.1860 8 7 3.4453 0.3229 -2.1406 9 14 6.0294 0.8716 -1.3054 10 1 6.5668 -0.3564 -0.6663 11 1 6.4338 0.9038 -2.7339 12 1 6.5693 2.0680 -0.6109 13 7 1.6287 2.1072 1.2438 14 6 2.0571 3.5293 1.2541 15 6 2.0306 3.8967 2.7590 16 6 2.5383 2.6046 3.4393 17 1 3.6048 2.6821 3.6506 18 7 1.7893 2.3521 4.6775 19 6 2.5352 1.4555 5.5705 20 6 1.4539 3.6112 5.3559 21 6 2.2760 1.4825 2.4177 22 1 3.2184 1.0204 2.1237 23 6 1.3473 0.4301 3.0265 24 1 -0.3634 0.5893 0.8418 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3633 -1.0238 0.0894 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8824 -0.0804 -2.9069 30 1 1.3544 4.1469 0.6949 31 1 3.0648 3.6305 0.8511 32 1 2.7023 4.7302 2.9646 33 1 1.0157 4.1292 3.0815 34 1 3.4914 1.9115 5.8273 35 1 1.9584 1.2856 6.4796 36 1 2.7098 0.5044 5.0675 37 1 0.6785 4.1315 4.7935 38 1 1.0916 3.3968 6.3614 39 1 2.3425 4.2394 5.4160 40 1 0.4702 0.9203 3.4491 41 1 1.0343 -0.2700 2.2519 42 1 1.8755 -0.1099 3.8123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382034552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = 24.296784 kcal Electronic energy + Delta-G solvation = -19185.752843 eV Core-core repulsion = 16587.418267 eV Total energy + Delta-G solvation = -2598.334576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.30732 -36.32413 -33.43127 -31.74346 -30.44463 -29.18699 -27.13101 -26.18724 -25.01244 -22.86060 -22.56969 -20.33167 -19.61885 -18.28183 -16.41452 -15.96602 -15.36212 -14.61280 -14.45559 -13.95185 -13.56218 -13.34305 -12.96106 -12.47558 -12.36184 -12.14718 -11.82088 -11.66721 -11.41682 -11.38170 -11.06782 -10.85890 -10.75363 -10.58996 -10.49886 -10.32187 -10.12528 -9.89111 -9.79617 -9.54774 -9.23611 -8.94238 -8.29804 -7.96329 -7.08763 -5.96460 -4.09004 3.26277 3.33881 3.35916 4.22309 4.40231 5.07052 5.17151 5.27187 5.31325 5.46926 5.51177 5.64313 5.71775 5.81128 5.96646 5.97969 6.00907 6.25148 6.32539 6.40627 6.46858 6.54594 6.58009 6.63660 6.73083 6.79993 6.85931 7.00243 7.15040 7.25232 7.27743 7.32769 7.44642 7.48258 7.70282 7.84228 8.07346 8.21976 8.32800 8.51782 9.02310 9.57252 11.02621 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.008513 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.129643 B = 3288.132498 C = 3693.215996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.205 3.795 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.505 5.505 14 C 0.041 3.959 15 C -0.124 4.124 16 C 0.075 3.925 17 H 0.040 0.960 18 N -0.528 5.528 19 C 0.019 3.981 20 C 0.024 3.976 21 C 0.077 3.923 22 H 0.066 0.934 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.017 0.983 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 3.560 11.262 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.098 3.902 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.230 5.230 14 C -0.088 4.088 15 C -0.162 4.162 16 C -0.034 4.034 17 H 0.058 0.942 18 N -0.252 5.252 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.032 4.032 22 H 0.084 0.916 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.750 3.181 10.971 12.023 hybrid contribution 2.893 0.451 -0.006 2.928 sum -0.857 3.632 10.964 11.582 Atomic orbital electron populations 1.21769 0.98934 0.98474 1.00670 1.21687 0.92232 0.99184 1.02093 1.19363 0.92689 0.91370 0.86739 0.94544 1.21711 0.92854 1.37690 1.05683 0.92632 1.24906 0.97663 0.95148 0.95677 1.69882 1.34764 1.37940 1.09605 0.86726 0.86504 0.78322 0.77230 1.20738 1.21199 1.20142 1.65047 1.53582 1.00685 1.03644 1.22998 0.99993 0.92003 0.93830 1.22754 1.01104 0.95547 0.96827 1.22674 0.94236 0.96567 0.89894 0.94191 1.62145 1.44598 1.13522 1.04908 1.22593 0.95646 0.98077 0.96611 1.22414 0.99947 0.91662 0.98399 1.22248 0.97567 0.93711 0.89704 0.91597 1.21922 0.99916 0.97707 0.99010 0.92681 0.94522 0.95760 0.89371 0.94072 0.92945 0.91715 0.92717 0.92662 0.90407 0.96434 0.91973 0.90444 0.91074 0.92340 0.96100 0.91849 0.92220 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.06 37.16 0.34 -2.60 16 2 C -0.11 -2.70 4.70 -26.73 -0.13 -2.83 16 3 C 0.21 5.05 1.80 -68.87 -0.12 4.93 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 5 C -0.54 -14.28 6.33 -34.44 -0.22 -14.49 16 6 H 0.06 1.48 6.04 -52.49 -0.32 1.16 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.81 11.30 55.43 0.63 -24.19 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.51 -10.73 4.27 -216.06 -0.92 -11.65 16 14 C 0.04 0.79 6.36 -1.90 -0.01 0.78 16 15 C -0.12 -2.01 5.57 -24.87 -0.14 -2.15 16 16 C 0.08 1.27 2.87 -66.36 -0.19 1.08 16 17 H 0.04 0.70 7.89 -51.93 -0.41 0.29 16 18 N -0.53 -7.75 3.24 -241.53 -0.78 -8.53 16 19 C 0.02 0.25 8.97 60.06 0.54 0.78 16 20 C 0.02 0.30 8.67 60.07 0.52 0.82 16 21 C 0.08 1.52 2.15 -66.65 -0.14 1.38 16 22 H 0.07 1.50 5.90 -51.93 -0.31 1.19 16 23 C -0.13 -2.33 7.69 37.15 0.29 -2.04 16 24 H 0.05 1.12 6.94 -51.93 -0.36 0.76 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 28 H 0.04 0.97 5.32 -51.93 -0.28 0.69 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.18 6.45 -51.93 -0.33 0.84 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.21 6.13 -51.93 -0.32 0.89 16 34 H 0.02 0.22 8.08 -51.93 -0.42 -0.20 16 35 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 36 H 0.08 1.05 5.56 -51.93 -0.29 0.76 16 37 H 0.07 0.87 6.38 -51.93 -0.33 0.54 16 38 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 39 H 0.02 0.25 7.98 -51.94 -0.41 -0.17 16 40 H 0.06 1.15 7.32 -51.92 -0.38 0.77 16 41 H 0.06 1.16 4.18 -51.93 -0.22 0.94 16 42 H 0.04 0.61 5.53 -51.93 -0.29 0.32 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -27.12 299.73 -7.99 -35.11 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.05 Total: 1.30 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 0.64 Total: -12.59 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.08 Total: -44.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.12 -7.99 -35.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382034552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds