Wall clock time and date at job start Mon Mar 30 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 H 1.09000 * 109.47115 * 303.89895 * 3 2 1 5 5 C 1.50694 * 109.47175 * 183.89638 * 3 2 1 6 6 H 1.07995 * 120.00363 * 240.00562 * 5 3 2 7 7 C 1.37884 * 119.99806 * 60.00424 * 5 3 2 8 8 N 1.31513 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99857 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47125 * 89.99628 * 9 7 5 11 11 H 1.48501 * 109.46815 * 209.99679 * 9 7 5 12 12 H 1.48500 * 109.46804 * 329.99453 * 9 7 5 13 13 N 1.46898 * 109.46687 * 63.89965 * 3 2 1 14 14 C 1.48533 * 110.99755 * 182.41349 * 13 3 2 15 15 C 1.54937 * 103.22794 * 200.27892 * 14 13 3 16 16 C 1.54598 * 102.92287 * 37.41035 * 15 14 13 17 17 H 1.09001 * 110.31072 * 96.95905 * 16 15 14 18 18 N 1.46893 * 110.31419 * 219.12978 * 16 15 14 19 19 C 1.46894 * 111.00530 * 200.51882 * 18 16 15 20 20 C 1.46909 * 110.99581 * 324.46852 * 18 16 15 21 21 C 1.47896 * 111.00326 * 65.01341 * 13 3 2 22 22 H 1.09005 * 110.07989 * 26.40168 * 21 13 3 23 23 C 1.52994 * 109.92223 * 265.19615 * 21 13 3 24 24 H 1.08992 * 109.47453 * 304.99306 * 1 2 3 25 25 H 1.09004 * 109.47428 * 64.99925 * 1 2 3 26 26 H 1.09001 * 109.47071 * 184.98794 * 1 2 3 27 27 H 1.08998 * 109.46864 * 240.00070 * 2 1 3 28 28 H 1.09003 * 109.47179 * 120.00423 * 2 1 3 29 29 H 0.97003 * 119.99803 * 180.02562 * 8 7 5 30 30 H 1.08993 * 110.67084 * 81.84433 * 14 13 3 31 31 H 1.08999 * 110.66754 * 318.71286 * 14 13 3 32 32 H 1.09001 * 110.72718 * 155.76687 * 15 14 13 33 33 H 1.09003 * 110.72471 * 279.05403 * 15 14 13 34 34 H 1.09004 * 109.47174 * 59.99312 * 19 18 16 35 35 H 1.08998 * 109.47905 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.46902 * 300.00018 * 19 18 16 37 37 H 1.09002 * 109.46800 * 71.88798 * 20 18 16 38 38 H 1.09003 * 109.46737 * 191.88880 * 20 18 16 39 39 H 1.08989 * 109.47137 * 311.89078 * 20 18 16 40 40 H 1.09007 * 109.47093 * 293.11346 * 23 21 13 41 41 H 1.09004 * 109.47175 * 53.11277 * 23 21 13 42 42 H 1.08996 * 109.47621 * 173.11404 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6207 1.9761 -0.8530 5 6 3.5438 1.4437 -0.0965 6 1 4.1350 1.8931 0.6876 7 6 4.1651 0.8708 -1.1860 8 7 3.4453 0.3229 -2.1406 9 14 6.0294 0.8716 -1.3054 10 1 6.5668 -0.3564 -0.6663 11 1 6.4338 0.9038 -2.7339 12 1 6.5693 2.0680 -0.6109 13 7 1.6287 2.1072 1.2438 14 6 2.0571 3.5293 1.2541 15 6 2.0306 3.8967 2.7590 16 6 2.5383 2.6046 3.4393 17 1 3.6048 2.6821 3.6506 18 7 1.7893 2.3521 4.6775 19 6 2.5352 1.4555 5.5705 20 6 1.4539 3.6112 5.3559 21 6 2.2760 1.4825 2.4177 22 1 3.2184 1.0204 2.1237 23 6 1.3473 0.4301 3.0265 24 1 -0.3634 0.5893 0.8418 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3633 -1.0238 0.0894 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8824 -0.0804 -2.9069 30 1 1.3544 4.1469 0.6949 31 1 3.0648 3.6305 0.8511 32 1 2.7023 4.7302 2.9646 33 1 1.0157 4.1292 3.0815 34 1 3.4914 1.9115 5.8273 35 1 1.9584 1.2856 6.4796 36 1 2.7098 0.5044 5.0675 37 1 0.6785 4.1315 4.7935 38 1 1.0916 3.3968 6.3614 39 1 2.3425 4.2394 5.4160 40 1 0.4702 0.9203 3.4491 41 1 1.0343 -0.2700 2.2519 42 1 1.8755 -0.1099 3.8123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382034552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:34 Heat of formation + Delta-G solvation = 7.856479 kcal Electronic energy + Delta-G solvation = -19186.465748 eV Core-core repulsion = 16587.418267 eV Total energy + Delta-G solvation = -2599.047481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79614 -37.79412 -35.16126 -33.62779 -31.97664 -30.78059 -28.28011 -27.91426 -26.52803 -24.71874 -23.80980 -21.99113 -21.26719 -19.90247 -18.27355 -17.62524 -16.75664 -16.32763 -15.63630 -15.41585 -15.11887 -14.99440 -14.70030 -13.96868 -13.86103 -13.37504 -13.29572 -13.20758 -12.99336 -12.87870 -12.79091 -12.57528 -12.42348 -12.06265 -11.96499 -11.91988 -11.70922 -11.54273 -11.48160 -11.36197 -11.01195 -10.84848 -10.35229 -9.11379 -8.89874 -8.01970 -6.23088 1.34947 1.36938 1.45083 2.39281 3.08508 3.16688 3.52441 3.81042 3.96107 4.28712 4.42514 4.51677 4.57338 4.63437 4.64582 4.74344 4.79208 4.85704 4.88787 4.90772 4.96154 5.02426 5.05610 5.08460 5.12124 5.25990 5.29641 5.34470 5.47136 5.48729 5.53431 5.69378 5.74146 5.93969 6.12797 6.19700 6.26139 6.29013 6.44286 6.63873 7.00296 7.46212 8.93249 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.008513 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.129643 B = 3288.132498 C = 3693.215996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C 0.213 3.787 4 H -0.001 1.001 5 C -0.544 4.544 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.504 5.504 14 C 0.035 3.965 15 C -0.109 4.109 16 C 0.082 3.918 17 H 0.033 0.967 18 N -0.537 5.537 19 C 0.019 3.981 20 C 0.024 3.976 21 C 0.076 3.924 22 H 0.030 0.970 23 C -0.116 4.116 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.021 0.979 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 4.134 13.442 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.105 3.895 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.228 5.228 14 C -0.094 4.094 15 C -0.147 4.147 16 C -0.028 4.028 17 H 0.051 0.949 18 N -0.261 5.261 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.033 4.033 22 H 0.048 0.952 23 C -0.174 4.174 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.991 3.763 13.172 14.268 hybrid contribution 2.950 0.292 -0.646 3.034 sum -1.042 4.054 12.525 13.206 Atomic orbital electron populations 1.21617 0.96484 0.99876 1.00519 1.21521 0.94349 0.98186 1.00447 1.19108 0.91554 0.91672 0.87125 0.98342 1.21919 0.93978 1.37071 1.05335 0.93317 1.25600 1.01637 0.95126 0.95561 1.70012 1.36211 1.38737 1.10039 0.85794 0.81775 0.78322 0.77179 1.20326 1.20890 1.19819 1.65007 1.53500 1.01510 1.02806 1.23054 0.98521 0.91231 0.96606 1.22680 1.02460 0.95841 0.93697 1.22468 0.94250 0.95440 0.90600 0.94923 1.62083 1.44236 1.15065 1.04672 1.22619 0.96166 0.97152 0.96943 1.22474 1.00178 0.90506 0.99234 1.22220 0.96086 0.95049 0.89957 0.95193 1.21803 0.99797 0.96942 0.98817 0.92032 0.95203 0.93676 0.92505 0.94075 0.93017 0.91257 0.95320 0.90632 0.89005 0.96070 0.89681 0.91543 0.90904 0.90272 0.95662 0.91353 0.93763 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.06 71.98 0.65 -4.62 16 2 C -0.11 -5.19 4.70 30.60 0.14 -5.04 16 3 C 0.21 10.81 1.80 44.17 0.08 10.89 16 4 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 5 C -0.54 -29.59 6.33 25.60 0.16 -29.43 16 6 H 0.05 2.67 6.04 -2.91 -0.02 2.65 16 7 C 0.02 1.13 5.30 84.66 0.45 1.58 16 8 N -0.91 -52.60 11.30 21.45 0.24 -52.36 16 9 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.50 -21.54 4.27 -837.47 -3.58 -25.12 16 14 C 0.03 1.35 6.36 86.65 0.55 1.90 16 15 C -0.11 -3.31 5.57 31.80 0.18 -3.13 16 16 C 0.08 2.64 2.87 45.80 0.13 2.77 16 17 H 0.03 1.10 7.89 -2.39 -0.02 1.09 16 18 N -0.54 -14.19 3.24 -918.07 -2.98 -17.16 16 19 C 0.02 0.44 8.97 127.69 1.15 1.58 16 20 C 0.02 0.49 8.67 127.69 1.11 1.60 16 21 C 0.08 2.98 2.15 45.06 0.10 3.08 16 22 H 0.03 1.39 5.90 -2.38 -0.01 1.38 16 23 C -0.12 -4.07 7.69 71.98 0.55 -3.52 16 24 H 0.06 2.44 6.94 -2.39 -0.02 2.43 16 25 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 3.13 5.97 -2.39 -0.01 3.11 16 28 H 0.04 1.96 5.32 -2.39 -0.01 1.95 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.03 1.26 6.45 -2.39 -0.02 1.24 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.57 6.13 -2.39 -0.01 2.56 16 34 H 0.02 0.47 8.08 -2.38 -0.02 0.45 16 35 H 0.08 1.57 8.00 -2.39 -0.02 1.55 16 36 H 0.07 1.66 5.56 -2.39 -0.01 1.65 16 37 H 0.07 1.50 6.38 -2.39 -0.02 1.48 16 38 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 39 H 0.02 0.51 7.98 -2.39 -0.02 0.49 16 40 H 0.07 2.33 7.32 -2.38 -0.02 2.31 16 41 H 0.04 1.67 4.18 -2.39 -0.01 1.66 16 42 H 0.05 1.69 5.53 -2.39 -0.01 1.67 16 Total: -1.00 -59.10 299.73 1.95 -57.15 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.98 Total: 13.88 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 5.25 Total: -22.33 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -6.31 Total: -94.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.10 1.95 -57.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382034552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.004 kcal (2) G-P(sol) polarization free energy of solvation -59.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds