Wall clock time and date at job start Mon Mar 30 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46823 * 2 1 4 4 H 1.08996 * 109.47424 * 305.00219 * 3 2 1 5 5 C 1.50702 * 109.47271 * 185.00039 * 3 2 1 6 6 H 1.08003 * 119.99939 * 240.00188 * 5 3 2 7 7 C 1.37880 * 119.99918 * 60.27091 * 5 3 2 8 8 N 1.31516 * 119.99717 * 359.73011 * 7 5 3 9 9 Si 1.86798 * 120.00040 * 179.72571 * 7 5 3 10 10 H 1.48499 * 109.47144 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46813 * 120.00352 * 9 7 5 12 12 H 1.48497 * 109.47273 * 240.00075 * 9 7 5 13 13 N 1.46904 * 109.47579 * 65.00225 * 3 2 1 14 14 C 1.48562 * 110.99940 * 69.86820 * 13 3 2 15 15 C 1.54381 * 104.59297 * 159.04469 * 14 13 3 16 16 C 1.54260 * 105.05836 * 336.14959 * 15 14 13 17 17 H 1.09002 * 110.32402 * 119.00060 * 16 15 14 18 18 N 1.46900 * 110.31933 * 241.10134 * 16 15 14 19 19 C 1.46900 * 110.99678 * 172.98354 * 18 16 15 20 20 C 1.46905 * 111.00348 * 296.93230 * 18 16 15 21 21 C 1.48555 * 111.00377 * 185.29163 * 13 3 2 22 22 H 1.08998 * 110.41103 * 319.73686 * 21 13 3 23 23 C 1.52998 * 110.41281 * 82.18037 * 21 13 3 24 24 H 1.08994 * 109.47135 * 59.99865 * 1 2 3 25 25 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47067 * 299.99942 * 1 2 3 27 27 H 1.08998 * 109.46753 * 240.00035 * 2 1 3 28 28 H 1.08999 * 109.47339 * 119.99730 * 2 1 3 29 29 H 0.96994 * 119.99555 * 179.97438 * 8 7 5 30 30 H 1.08998 * 110.41125 * 277.82595 * 14 13 3 31 31 H 1.09000 * 110.41267 * 40.14903 * 14 13 3 32 32 H 1.09003 * 110.32059 * 95.04232 * 15 14 13 33 33 H 1.09002 * 110.32326 * 217.14961 * 15 14 13 34 34 H 1.09000 * 109.47369 * 60.00249 * 19 18 16 35 35 H 1.08999 * 109.47139 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.47141 * 300.00017 * 19 18 16 37 37 H 1.08999 * 109.46676 * 65.75706 * 20 18 16 38 38 H 1.08994 * 109.46974 * 185.75601 * 20 18 16 39 39 H 1.08996 * 109.47050 * 305.75849 * 20 18 16 40 40 H 1.09008 * 109.47241 * 58.54381 * 23 21 13 41 41 H 1.09004 * 109.47518 * 178.54370 * 23 21 13 42 42 H 1.09000 * 109.46990 * 298.54960 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1431 0.8835 -1.2307 8 7 3.4060 0.3421 -2.1758 9 14 6.0044 0.8927 -1.3878 10 1 6.5982 1.5562 -0.1994 11 1 6.5007 -0.5043 -1.4739 12 1 6.3939 1.6329 -2.6149 13 7 1.6514 2.0993 1.2552 14 6 2.4099 1.5421 2.4047 15 6 2.3212 2.6321 3.4944 16 6 2.0638 3.9455 2.7274 17 1 1.1120 4.3812 3.0314 18 7 3.1579 4.8969 2.9633 19 6 3.0143 6.0859 2.1126 20 6 3.2338 5.2708 4.3820 21 6 2.0186 3.5387 1.2389 22 1 2.9964 3.6763 0.7773 23 6 0.9570 4.3518 0.4955 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8289 -0.0521 -2.9546 30 1 1.9483 0.6181 2.7527 31 1 3.4485 1.3653 2.1250 32 1 1.4949 2.4221 4.1735 33 1 3.2588 2.6921 4.0470 34 1 2.0681 6.5794 2.3346 35 1 3.8369 6.7738 2.3078 36 1 3.0310 5.7869 1.0645 37 1 3.5110 4.3981 4.9733 38 1 3.9835 6.0512 4.5124 39 1 2.2632 5.6404 4.7127 40 1 -0.0100 4.2161 0.9800 41 1 1.2282 5.4074 0.5150 42 1 0.8964 4.0113 -0.5382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382034554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:37 Heat of formation + Delta-G solvation = 9.406288 kcal Electronic energy + Delta-G solvation = -19043.352837 eV Core-core repulsion = 16444.372560 eV Total energy + Delta-G solvation = -2598.980276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.17872 -36.27099 -33.46832 -31.47164 -30.98681 -29.07076 -27.17049 -26.04507 -25.20989 -22.95711 -22.24088 -20.75978 -19.17904 -18.76091 -16.21509 -16.05464 -15.02927 -14.52404 -14.44659 -13.96765 -13.41448 -13.41063 -12.89949 -12.79363 -12.51959 -12.17061 -11.90673 -11.76791 -11.51419 -11.36989 -11.19317 -10.90735 -10.72695 -10.57539 -10.53757 -10.37152 -10.18603 -9.95349 -9.80732 -9.58875 -9.34967 -9.00632 -8.31036 -8.05021 -7.14533 -5.94698 -4.06214 3.29221 3.38039 3.43042 4.18683 4.44444 5.13972 5.22511 5.31239 5.34097 5.40175 5.50717 5.68479 5.71783 5.74749 5.92598 6.01880 6.06051 6.16361 6.18342 6.23967 6.39492 6.43489 6.51839 6.56385 6.66640 6.74241 6.82858 6.91388 7.02586 7.11707 7.21550 7.30153 7.33902 7.49383 7.67031 7.80684 8.03224 8.20630 8.29794 8.50111 9.04802 9.60462 11.05183 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.009323 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.331252 B = 3002.581202 C = 3649.727277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.504 5.504 14 C 0.037 3.963 15 C -0.118 4.118 16 C 0.084 3.916 17 H 0.040 0.960 18 N -0.538 5.538 19 C 0.023 3.977 20 C 0.026 3.974 21 C 0.069 3.931 22 H 0.075 0.925 23 C -0.136 4.136 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 7.179 8.792 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.229 5.229 14 C -0.091 4.091 15 C -0.156 4.156 16 C -0.025 4.025 17 H 0.058 0.942 18 N -0.263 5.263 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.040 4.040 22 H 0.093 0.907 23 C -0.194 4.194 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.818 6.767 8.528 11.245 hybrid contribution 1.195 0.456 -0.092 1.283 sum -1.623 7.223 8.436 11.224 Atomic orbital electron populations 1.21709 0.98983 0.98320 1.00498 1.21530 0.92124 0.99168 1.01806 1.19370 0.93187 0.91254 0.86464 0.94427 1.21804 0.92859 1.37858 1.05294 0.91901 1.24906 0.97696 0.95130 0.95724 1.69893 1.34629 1.38631 1.09328 0.86652 0.86429 0.77630 0.78025 1.19753 1.21125 1.21136 1.65684 1.51236 1.00697 1.05261 1.22970 0.99346 0.95999 0.90784 1.22399 1.00687 0.94575 0.97962 1.22510 0.90631 0.92286 0.97043 0.94170 1.62080 1.45440 1.13567 1.05201 1.22468 0.99184 0.91814 0.99068 1.22363 0.99560 1.00824 0.89525 1.22458 0.98511 0.90760 0.92251 0.90728 1.21795 0.98635 0.97947 1.00986 0.94333 0.95699 0.93395 0.89096 0.95115 0.93066 0.92020 0.91530 0.92473 0.91447 0.96135 0.92092 0.90447 0.91380 0.91980 0.96180 0.93128 0.93515 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.11 -2.58 5.25 -26.73 -0.14 -2.72 16 3 C 0.20 4.99 1.70 -68.86 -0.12 4.88 16 4 H 0.04 1.03 7.28 -51.93 -0.38 0.65 16 5 C -0.54 -14.30 6.56 -34.44 -0.23 -14.52 16 6 H 0.06 1.70 5.65 -52.48 -0.30 1.41 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.50 -10.66 4.50 -215.62 -0.97 -11.63 16 14 C 0.04 0.75 5.48 -2.18 -0.01 0.73 16 15 C -0.12 -1.97 6.21 -25.35 -0.16 -2.12 16 16 C 0.08 1.40 2.36 -66.33 -0.16 1.25 16 17 H 0.04 0.66 7.85 -51.93 -0.41 0.26 16 18 N -0.54 -8.35 4.79 -241.50 -1.16 -9.51 16 19 C 0.02 0.32 8.34 60.06 0.50 0.82 16 20 C 0.03 0.32 9.26 60.07 0.56 0.88 16 21 C 0.07 1.34 1.53 -66.08 -0.10 1.24 16 22 H 0.07 1.68 6.07 -51.93 -0.32 1.36 16 23 C -0.14 -2.37 9.06 37.16 0.34 -2.03 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.96 7.75 -51.93 -0.40 0.55 16 27 H 0.09 2.43 5.96 -51.93 -0.31 2.12 16 28 H 0.03 0.72 7.05 -51.93 -0.37 0.36 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 31 H 0.07 1.50 5.50 -51.93 -0.29 1.21 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 34 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 35 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.08 1.16 5.67 -51.93 -0.29 0.87 16 37 H 0.07 0.83 6.71 -51.93 -0.35 0.48 16 38 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 39 H 0.02 0.24 8.12 -51.93 -0.42 -0.19 16 40 H 0.05 0.84 8.12 -51.92 -0.42 0.42 16 41 H 0.05 0.70 6.08 -51.93 -0.32 0.39 16 42 H 0.06 1.11 7.36 -51.93 -0.38 0.73 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -27.36 308.70 -8.46 -35.83 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.35 Total: 1.04 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 0.75 Total: -12.34 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -1.50 Total: -45.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.36 -8.46 -35.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382034554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.233 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds