Wall clock time and date at job start Mon Mar 30 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46823 * 2 1 4 4 H 1.08996 * 109.47424 * 305.00219 * 3 2 1 5 5 C 1.50702 * 109.47271 * 185.00039 * 3 2 1 6 6 H 1.08003 * 119.99939 * 240.00188 * 5 3 2 7 7 C 1.37880 * 119.99918 * 60.27091 * 5 3 2 8 8 N 1.31516 * 119.99717 * 359.73011 * 7 5 3 9 9 Si 1.86798 * 120.00040 * 179.72571 * 7 5 3 10 10 H 1.48499 * 109.47144 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46813 * 120.00352 * 9 7 5 12 12 H 1.48497 * 109.47273 * 240.00075 * 9 7 5 13 13 N 1.46904 * 109.47579 * 65.00225 * 3 2 1 14 14 C 1.48562 * 110.99940 * 69.86820 * 13 3 2 15 15 C 1.54381 * 104.59297 * 159.04469 * 14 13 3 16 16 C 1.54260 * 105.05836 * 336.14959 * 15 14 13 17 17 H 1.09002 * 110.32402 * 119.00060 * 16 15 14 18 18 N 1.46900 * 110.31933 * 241.10134 * 16 15 14 19 19 C 1.46900 * 110.99678 * 172.98354 * 18 16 15 20 20 C 1.46905 * 111.00348 * 296.93230 * 18 16 15 21 21 C 1.48555 * 111.00377 * 185.29163 * 13 3 2 22 22 H 1.08998 * 110.41103 * 319.73686 * 21 13 3 23 23 C 1.52998 * 110.41281 * 82.18037 * 21 13 3 24 24 H 1.08994 * 109.47135 * 59.99865 * 1 2 3 25 25 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47067 * 299.99942 * 1 2 3 27 27 H 1.08998 * 109.46753 * 240.00035 * 2 1 3 28 28 H 1.08999 * 109.47339 * 119.99730 * 2 1 3 29 29 H 0.96994 * 119.99555 * 179.97438 * 8 7 5 30 30 H 1.08998 * 110.41125 * 277.82595 * 14 13 3 31 31 H 1.09000 * 110.41267 * 40.14903 * 14 13 3 32 32 H 1.09003 * 110.32059 * 95.04232 * 15 14 13 33 33 H 1.09002 * 110.32326 * 217.14961 * 15 14 13 34 34 H 1.09000 * 109.47369 * 60.00249 * 19 18 16 35 35 H 1.08999 * 109.47139 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.47141 * 300.00017 * 19 18 16 37 37 H 1.08999 * 109.46676 * 65.75706 * 20 18 16 38 38 H 1.08994 * 109.46974 * 185.75601 * 20 18 16 39 39 H 1.08996 * 109.47050 * 305.75849 * 20 18 16 40 40 H 1.09008 * 109.47241 * 58.54381 * 23 21 13 41 41 H 1.09004 * 109.47518 * 178.54370 * 23 21 13 42 42 H 1.09000 * 109.46990 * 298.54960 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1431 0.8835 -1.2307 8 7 3.4060 0.3421 -2.1758 9 14 6.0044 0.8927 -1.3878 10 1 6.5982 1.5562 -0.1994 11 1 6.5007 -0.5043 -1.4739 12 1 6.3939 1.6329 -2.6149 13 7 1.6514 2.0993 1.2552 14 6 2.4099 1.5421 2.4047 15 6 2.3212 2.6321 3.4944 16 6 2.0638 3.9455 2.7274 17 1 1.1120 4.3812 3.0314 18 7 3.1579 4.8969 2.9633 19 6 3.0143 6.0859 2.1126 20 6 3.2338 5.2708 4.3820 21 6 2.0186 3.5387 1.2389 22 1 2.9964 3.6763 0.7773 23 6 0.9570 4.3518 0.4955 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8289 -0.0521 -2.9546 30 1 1.9483 0.6181 2.7527 31 1 3.4485 1.3653 2.1250 32 1 1.4949 2.4221 4.1735 33 1 3.2588 2.6921 4.0470 34 1 2.0681 6.5794 2.3346 35 1 3.8369 6.7738 2.3078 36 1 3.0310 5.7869 1.0645 37 1 3.5110 4.3981 4.9733 38 1 3.9835 6.0512 4.5124 39 1 2.2632 5.6404 4.7127 40 1 -0.0100 4.2161 0.9800 41 1 1.2282 5.4074 0.5150 42 1 0.8964 4.0113 -0.5382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382034554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:37 Heat of formation + Delta-G solvation = -8.380789 kcal Electronic energy + Delta-G solvation = -19044.124142 eV Core-core repulsion = 16444.372560 eV Total energy + Delta-G solvation = -2599.751582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66869 -37.75840 -35.21190 -33.42398 -32.43269 -30.69000 -28.27351 -27.86694 -26.66049 -24.82146 -23.53194 -22.40742 -20.76451 -20.42997 -18.19288 -17.53343 -16.68422 -16.09963 -15.83041 -15.36740 -15.00377 -14.93779 -14.55153 -14.32227 -14.14726 -13.59628 -13.22242 -13.18574 -13.03451 -12.97894 -12.79639 -12.53761 -12.36923 -12.23769 -12.10543 -11.88648 -11.72732 -11.64844 -11.50296 -11.45513 -11.15607 -10.89328 -10.40089 -9.18318 -8.97516 -8.01791 -6.21044 1.35228 1.38795 1.48997 2.41607 3.00502 3.17826 3.69419 3.77057 3.94461 4.29149 4.35434 4.49024 4.53852 4.59403 4.65643 4.67773 4.72257 4.76898 4.77118 4.82830 4.93312 4.99338 5.01076 5.07661 5.09721 5.20971 5.25620 5.34764 5.36244 5.41207 5.48087 5.54380 5.67009 5.79993 6.07711 6.18505 6.20069 6.27293 6.43697 6.58461 7.00849 7.48188 8.94658 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.009323 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.331252 B = 3002.581202 C = 3649.727277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.003 0.997 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.502 5.502 14 C 0.037 3.963 15 C -0.108 4.108 16 C 0.094 3.906 17 H 0.053 0.947 18 N -0.560 5.560 19 C 0.024 3.976 20 C 0.027 3.973 21 C 0.068 3.932 22 H 0.038 0.962 23 C -0.128 4.128 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 8.208 10.671 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.021 0.979 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.226 5.226 14 C -0.092 4.092 15 C -0.146 4.146 16 C -0.015 4.015 17 H 0.071 0.929 18 N -0.285 5.285 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.041 4.041 22 H 0.056 0.944 23 C -0.186 4.186 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.100 7.806 10.422 13.385 hybrid contribution 1.293 0.170 -0.661 1.462 sum -1.807 7.976 9.762 12.735 Atomic orbital electron populations 1.21562 0.96332 0.99738 1.00598 1.21382 0.94460 0.98270 1.00101 1.19092 0.91803 0.91476 0.87028 0.97893 1.21993 0.94089 1.37124 1.04868 0.92932 1.25575 1.01455 0.95186 0.95674 1.70012 1.35995 1.39423 1.09725 0.85748 0.81965 0.77612 0.77776 1.19768 1.20680 1.20853 1.65635 1.51080 1.01781 1.04116 1.22950 0.97227 0.97571 0.91432 1.22351 1.02112 0.93105 0.97044 1.22343 0.91799 0.92851 0.94504 0.92948 1.62037 1.44976 1.14295 1.07220 1.22455 1.00675 0.91555 0.97713 1.22411 1.00716 1.01465 0.87504 1.22461 0.97161 0.89901 0.94586 0.94414 1.21730 0.98635 0.98951 0.99247 0.94968 0.93617 0.92428 0.92112 0.95347 0.93090 0.91640 0.94643 0.90167 0.90638 0.94703 0.90446 0.92440 0.91172 0.90476 0.95024 0.91972 0.91179 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.80 71.98 0.71 -4.40 16 2 C -0.10 -5.03 5.25 30.59 0.16 -4.87 16 3 C 0.21 10.77 1.70 44.17 0.07 10.84 16 4 H 0.00 0.18 7.28 -2.39 -0.02 0.16 16 5 C -0.54 -29.62 6.56 25.60 0.17 -29.45 16 6 H 0.05 2.94 5.65 -2.91 -0.02 2.93 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -52.69 11.30 21.45 0.24 -52.45 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.50 -21.28 4.50 -836.10 -3.76 -25.04 16 14 C 0.04 1.45 5.48 86.45 0.47 1.92 16 15 C -0.11 -3.36 6.21 31.49 0.20 -3.16 16 16 C 0.09 2.95 2.36 45.81 0.11 3.06 16 17 H 0.05 1.54 7.85 -2.39 -0.02 1.53 16 18 N -0.56 -16.12 4.79 -917.98 -4.40 -20.52 16 19 C 0.02 0.61 8.34 127.69 1.07 1.68 16 20 C 0.03 0.58 9.26 127.69 1.18 1.76 16 21 C 0.07 2.63 1.53 45.06 0.07 2.70 16 22 H 0.04 1.75 6.07 -2.39 -0.01 1.73 16 23 C -0.13 -4.39 9.06 71.98 0.65 -3.74 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 2.22 7.75 -2.38 -0.02 2.20 16 27 H 0.06 3.33 5.96 -2.39 -0.01 3.32 16 28 H 0.03 1.35 7.05 -2.39 -0.02 1.33 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.07 2.49 7.64 -2.39 -0.02 2.47 16 31 H 0.04 1.62 5.50 -2.39 -0.01 1.61 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.24 6.66 -2.39 -0.02 2.23 16 34 H 0.03 0.78 8.11 -2.39 -0.02 0.76 16 35 H 0.08 1.70 8.06 -2.39 -0.02 1.68 16 36 H 0.06 1.68 5.67 -2.38 -0.01 1.67 16 37 H 0.07 1.49 6.71 -2.39 -0.02 1.47 16 38 H 0.08 1.45 8.02 -2.39 -0.02 1.43 16 39 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 40 H 0.06 1.97 8.12 -2.38 -0.02 1.95 16 41 H 0.07 2.04 6.08 -2.39 -0.01 2.02 16 42 H 0.03 1.30 7.36 -2.39 -0.02 1.29 16 Total: -1.00 -59.75 308.70 0.38 -59.37 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.97 Total: 14.16 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 5.30 Total: -22.08 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -7.92 Total: -98.01 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -59.75 0.38 -59.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382034554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.987 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds