Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2 6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3 7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4 8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5 9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47485 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47383 * 180.02562 * 11 10 9 13 13 H 1.08009 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99862 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47158 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46941 * 120.00139 * 16 14 12 19 19 H 1.48498 * 109.47668 * 240.00259 * 16 14 12 20 20 C 1.47482 * 110.99764 * 169.99993 * 4 3 2 21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.08999 * 113.47664 * 336.06792 * 5 4 3 29 29 H 1.08994 * 113.47488 * 106.52987 * 5 4 3 30 30 H 1.08997 * 114.34322 * 272.36212 * 6 5 4 31 31 H 1.00896 * 110.99681 * 235.11276 * 7 6 5 32 32 H 1.09003 * 109.47251 * 300.00157 * 8 7 6 33 33 H 1.09002 * 109.46949 * 60.00179 * 8 7 6 34 34 H 1.08999 * 109.46925 * 300.00601 * 9 8 7 35 35 H 1.08998 * 109.47086 * 59.99725 * 9 8 7 36 36 H 1.08999 * 109.47457 * 300.00185 * 10 9 8 37 37 H 1.09002 * 109.46823 * 59.99970 * 10 9 8 38 38 H 1.09003 * 109.47169 * 300.00075 * 11 10 9 39 39 H 1.09002 * 109.47115 * 60.00149 * 11 10 9 40 40 H 0.96996 * 119.99580 * 179.97438 * 15 14 12 41 41 H 1.08994 * 113.48196 * 253.46980 * 20 4 3 42 42 H 1.09003 * 113.47819 * 23.94188 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 1.5390 1.3726 6 6 5.0941 2.5164 0.8375 7 7 5.3656 3.6542 1.7262 8 6 6.7135 3.5616 2.3030 9 6 6.9589 4.7607 3.2211 10 6 8.3628 4.6647 3.8213 11 6 8.6084 5.8642 4.7389 12 6 9.9915 5.7699 5.3296 13 1 10.6317 4.9378 5.0757 14 6 10.4403 6.7463 6.1934 15 7 9.6610 7.7597 6.5023 16 14 12.1545 6.6290 6.9263 17 1 12.8247 5.4026 6.4242 18 1 12.9450 7.8221 6.5298 19 1 12.0570 6.5695 8.4068 20 6 4.0374 2.7985 -0.2397 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.3409 1.9949 2.0756 29 1 4.4594 0.6042 1.7422 30 1 5.9986 2.0387 0.4612 31 1 5.2391 4.5299 1.2413 32 1 6.7999 2.6400 2.8787 33 1 7.4523 3.5600 1.5016 34 1 6.8723 5.6825 2.6457 35 1 6.2200 4.7620 4.0224 36 1 8.4498 3.7430 4.3966 37 1 9.1014 4.6637 3.0197 38 1 8.5216 6.7857 4.1632 39 1 7.8699 5.8656 5.5405 40 1 9.9766 8.4464 7.1103 41 1 4.4581 2.9311 -1.2364 42 1 3.3400 3.5906 0.0330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385799524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = 4.979529 kcal Electronic energy + Delta-G solvation = -16538.357280 eV Core-core repulsion = 13939.185045 eV Total energy + Delta-G solvation = -2599.172235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38113 -36.28371 -34.66141 -33.48900 -31.85491 -29.15035 -27.47431 -26.16960 -24.65378 -23.40733 -21.47842 -21.25959 -20.26218 -19.61122 -16.42845 -16.17907 -16.06407 -15.81518 -15.26868 -14.59472 -14.39576 -13.92554 -13.73452 -13.18966 -12.88675 -12.79412 -12.47192 -12.22445 -12.00455 -11.71746 -11.64373 -11.32560 -11.04789 -10.96854 -10.82343 -10.65577 -10.52895 -10.44323 -10.39586 -9.61849 -9.28780 -9.16358 -8.96152 -8.45720 -8.31722 -5.96798 -3.98841 3.32600 3.39860 3.44283 3.68127 4.20756 4.22343 4.48822 4.59332 4.73789 4.84392 4.97235 5.04185 5.20484 5.26461 5.36697 5.38730 5.42713 5.43506 5.46542 5.52137 5.66877 5.71679 5.73819 5.83426 5.91606 5.97666 6.11665 6.17097 6.27676 6.52375 6.81803 6.83798 6.97395 7.04366 7.23743 7.35675 7.72661 7.88259 8.04516 8.47444 9.08961 9.65009 11.14610 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072825 B = 0.002689 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.389414 B =10411.175188 C =10432.653907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.020 3.980 4 N -0.475 5.475 5 C 0.009 3.991 6 C 0.055 3.945 7 N -0.679 5.679 8 C 0.059 3.941 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.007 4.007 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.342 0.658 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.083 0.917 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 -12.355 -14.021 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.109 4.109 4 N -0.198 5.198 5 C -0.121 4.121 6 C -0.056 4.056 7 N -0.311 5.311 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.136 4.136 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.725 -13.055 -13.825 24.674 hybrid contribution 1.100 0.947 0.224 1.469 sum -14.625 -12.107 -13.600 23.354 Atomic orbital electron populations 1.21757 0.95755 1.01759 1.01737 1.21392 0.95114 0.96160 1.02646 1.22728 0.89137 0.97747 1.01249 1.68834 1.09065 1.24090 1.17765 1.24071 0.97252 0.99551 0.91197 1.23134 0.96722 0.93487 0.92280 1.60623 1.29479 1.04424 1.36531 1.22143 0.87187 1.00380 0.97250 1.21641 0.99216 0.96021 0.98494 1.21587 0.93261 1.00903 0.98961 1.19100 0.96468 0.92184 0.93921 1.21332 1.00090 1.07795 1.26497 0.92708 1.25045 0.97450 0.95477 0.96671 1.69982 1.36236 1.11702 1.35665 0.86551 0.84666 0.77933 0.78934 1.19765 1.21061 1.21023 1.24114 0.97288 0.92156 1.00083 0.92540 0.92798 0.92780 0.91394 0.91996 0.91204 0.93498 0.90381 0.90115 0.89657 0.83910 0.91179 0.95330 0.92761 0.91691 0.93419 0.93660 0.96741 0.96613 0.93118 0.89903 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.91 6.26 -26.73 -0.17 -1.07 16 3 C 0.02 0.17 4.82 -3.82 -0.02 0.16 16 4 N -0.48 -4.76 6.33 -244.63 -1.55 -6.31 16 5 C 0.01 0.09 7.52 -7.54 -0.06 0.04 16 6 C 0.05 0.59 4.49 -67.49 -0.30 0.28 16 7 N -0.68 -8.23 6.59 -106.43 -0.70 -8.93 16 8 C 0.06 0.83 5.53 -3.82 -0.02 0.81 16 9 C -0.12 -1.97 5.47 -26.74 -0.15 -2.11 16 10 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.01 -0.06 7.28 -7.54 -0.05 -0.12 16 21 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.05 0.41 7.30 -51.93 -0.38 0.03 16 28 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.34 3.83 8.57 -39.29 -0.34 3.49 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -30.14 338.37 -10.75 -40.89 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.22 Total: -2.54 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.09 Total: -18.47 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -1.51 Total: -41.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.14 -10.75 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385799524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.868 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds