Wall clock time and date at job start Mon Mar 30 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2 6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3 7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4 8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5 9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47485 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47383 * 180.02562 * 11 10 9 13 13 H 1.08009 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00235 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99862 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47158 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46941 * 120.00139 * 16 14 12 19 19 H 1.48498 * 109.47668 * 240.00259 * 16 14 12 20 20 C 1.47482 * 110.99764 * 169.99993 * 4 3 2 21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.08999 * 113.47664 * 336.06792 * 5 4 3 29 29 H 1.08994 * 113.47488 * 106.52987 * 5 4 3 30 30 H 1.08997 * 114.34322 * 272.36212 * 6 5 4 31 31 H 1.00896 * 110.99681 * 235.11276 * 7 6 5 32 32 H 1.09003 * 109.47251 * 300.00157 * 8 7 6 33 33 H 1.09002 * 109.46949 * 60.00179 * 8 7 6 34 34 H 1.08999 * 109.46925 * 300.00601 * 9 8 7 35 35 H 1.08998 * 109.47086 * 59.99725 * 9 8 7 36 36 H 1.08999 * 109.47457 * 300.00185 * 10 9 8 37 37 H 1.09002 * 109.46823 * 59.99970 * 10 9 8 38 38 H 1.09003 * 109.47169 * 300.00075 * 11 10 9 39 39 H 1.09002 * 109.47115 * 60.00149 * 11 10 9 40 40 H 0.96996 * 119.99580 * 179.97438 * 15 14 12 41 41 H 1.08994 * 113.48196 * 253.46980 * 20 4 3 42 42 H 1.09003 * 113.47819 * 23.94188 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 1.5390 1.3726 6 6 5.0941 2.5164 0.8375 7 7 5.3656 3.6542 1.7262 8 6 6.7135 3.5616 2.3030 9 6 6.9589 4.7607 3.2211 10 6 8.3628 4.6647 3.8213 11 6 8.6084 5.8642 4.7389 12 6 9.9915 5.7699 5.3296 13 1 10.6317 4.9378 5.0757 14 6 10.4403 6.7463 6.1934 15 7 9.6610 7.7597 6.5023 16 14 12.1545 6.6290 6.9263 17 1 12.8247 5.4026 6.4242 18 1 12.9450 7.8221 6.5298 19 1 12.0570 6.5695 8.4068 20 6 4.0374 2.7985 -0.2397 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.3409 1.9949 2.0756 29 1 4.4594 0.6042 1.7422 30 1 5.9986 2.0387 0.4612 31 1 5.2391 4.5299 1.2413 32 1 6.7999 2.6400 2.8787 33 1 7.4523 3.5600 1.5016 34 1 6.8723 5.6825 2.6457 35 1 6.2200 4.7620 4.0224 36 1 8.4498 3.7430 4.3966 37 1 9.1014 4.6637 3.0197 38 1 8.5216 6.7857 4.1632 39 1 7.8699 5.8656 5.5405 40 1 9.9766 8.4464 7.1103 41 1 4.4581 2.9311 -1.2364 42 1 3.3400 3.5906 0.0330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385799524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:34 Heat of formation + Delta-G solvation = -15.504082 kcal Electronic energy + Delta-G solvation = -16539.245516 eV Core-core repulsion = 13939.185045 eV Total energy + Delta-G solvation = -2600.060471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17635 -37.52037 -35.86935 -34.89660 -33.53781 -30.43287 -28.74196 -26.96230 -26.22340 -24.43306 -22.88933 -22.01099 -21.79854 -20.61519 -18.43292 -17.25128 -16.93117 -16.71606 -16.51207 -16.18234 -15.70516 -14.79245 -14.62078 -14.58481 -14.14259 -13.86926 -13.60275 -13.50928 -13.20577 -13.00914 -12.83719 -12.64566 -12.39043 -12.21399 -12.10868 -12.10578 -11.68026 -11.56646 -11.40322 -11.35646 -11.27718 -10.94973 -10.55885 -9.94688 -9.42452 -8.20048 -6.31321 1.39627 1.40025 1.53616 2.40857 2.87929 3.12648 3.30253 3.42783 3.91994 4.00772 4.09685 4.14258 4.24176 4.27943 4.40497 4.51264 4.55148 4.58456 4.63453 4.69519 4.76208 4.82016 4.86051 4.87842 4.94991 5.01183 5.14807 5.19213 5.25541 5.29075 5.36917 5.37812 5.44081 5.55966 5.78669 5.87440 6.07505 6.08379 6.26164 6.42310 6.86580 7.37978 8.92020 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072825 B = 0.002689 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.389414 B =10411.175188 C =10432.653907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.020 3.980 4 N -0.484 5.484 5 C 0.010 3.990 6 C 0.054 3.946 7 N -0.682 5.682 8 C 0.072 3.928 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.022 3.978 12 C -0.543 4.543 13 H 0.060 0.940 14 C -0.005 4.005 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.001 3.999 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.348 0.652 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.263 0.737 41 H 0.092 0.908 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.324 -13.244 -14.821 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.108 4.108 4 N -0.206 5.206 5 C -0.120 4.120 6 C -0.057 4.057 7 N -0.314 5.314 8 C -0.057 4.057 9 C -0.143 4.143 10 C -0.136 4.136 11 C -0.015 4.015 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.129 4.129 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.494 -13.955 -14.640 25.478 hybrid contribution 0.976 1.237 0.466 1.644 sum -14.517 -12.717 -14.174 23.946 Atomic orbital electron populations 1.21733 0.94621 1.02297 1.02043 1.21367 0.96086 0.95568 1.02039 1.22760 0.88313 0.98258 1.01498 1.68844 1.10023 1.24532 1.17243 1.24026 0.97135 0.99324 0.91470 1.23134 0.96992 0.92963 0.92595 1.60550 1.28129 1.05352 1.37379 1.21898 0.88503 0.98493 0.96846 1.21459 0.96443 0.97724 0.98686 1.21399 0.95834 0.98227 0.98100 1.19034 0.95037 0.93632 0.93819 1.21779 1.01240 1.08126 1.26979 0.92205 1.26037 1.02119 0.94972 0.97080 1.70112 1.38500 1.12539 1.36346 0.85373 0.79011 0.78438 0.78060 1.18550 1.20302 1.20331 1.24088 0.96717 0.92029 1.00035 0.91925 0.92761 0.92185 0.91779 0.92790 0.90464 0.93655 0.90902 0.90358 0.89775 0.83206 0.91290 0.94576 0.92671 0.92702 0.93156 0.93067 0.99138 0.99280 0.92785 0.89007 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.11 -1.64 6.26 30.59 0.19 -1.45 16 3 C 0.02 0.32 4.82 86.30 0.42 0.74 16 4 N -0.48 -9.00 6.33 -927.88 -5.88 -14.87 16 5 C 0.01 0.20 7.52 83.58 0.63 0.83 16 6 C 0.05 1.07 4.49 45.37 0.20 1.27 16 7 N -0.68 -15.53 6.59 -490.62 -3.23 -18.77 16 8 C 0.07 1.90 5.53 86.30 0.48 2.38 16 9 C -0.11 -3.52 5.47 30.59 0.17 -3.36 16 10 C -0.10 -4.03 5.15 30.59 0.16 -3.88 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 15 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 C 0.00 0.01 7.28 83.58 0.61 0.62 16 21 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.05 0.74 7.30 -2.39 -0.02 0.72 16 28 H 0.07 1.52 7.42 -2.39 -0.02 1.51 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 31 H 0.35 7.22 8.57 -89.70 -0.77 6.45 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.28 7.91 -2.39 -0.02 1.26 16 Total: -1.00 -64.05 338.37 -2.21 -66.26 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.18 Total: 11.86 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.41 Total: -33.76 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -8.82 Total: -91.31 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.05 -2.21 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385799524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.760 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds