Wall clock time and date at job start Mon Mar 30 2020 03:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47280 * 2 1 4 4 H 1.08998 * 109.47422 * 174.80006 * 3 2 1 5 5 C 1.50705 * 109.46793 * 54.80380 * 3 2 1 6 6 H 1.08005 * 119.99711 * 240.00488 * 5 3 2 7 7 C 1.37871 * 120.00506 * 60.00217 * 5 3 2 8 8 N 1.31520 * 119.99692 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00383 * 179.72445 * 7 5 3 10 10 H 1.48498 * 109.46814 * 89.99763 * 9 7 5 11 11 H 1.48498 * 109.47122 * 209.99920 * 9 7 5 12 12 H 1.48495 * 109.46716 * 330.00071 * 9 7 5 13 13 N 1.46895 * 109.46895 * 294.80600 * 3 2 1 14 14 C 1.46897 * 110.99697 * 273.13452 * 13 3 2 15 15 H 1.08997 * 109.47236 * 35.52523 * 14 13 3 16 16 C 1.53002 * 109.47346 * 275.52245 * 14 13 3 17 17 C 1.53009 * 109.47199 * 155.52259 * 14 13 3 18 18 H 1.08994 * 109.45705 * 65.02132 * 17 14 13 19 19 C 1.53039 * 109.46281 * 184.99947 * 17 14 13 20 20 C 1.53115 * 109.27406 * 179.19656 * 19 17 14 21 21 C 1.53121 * 109.16368 * 302.34425 * 20 19 17 22 22 C 1.53045 * 109.27618 * 57.65753 * 21 20 19 23 23 N 1.46843 * 109.51957 * 300.82066 * 22 21 20 24 24 H 1.09005 * 109.47295 * 305.35460 * 1 2 3 25 25 H 1.09003 * 109.47166 * 65.35336 * 1 2 3 26 26 H 1.08996 * 109.47350 * 185.35297 * 1 2 3 27 27 H 1.08998 * 109.47565 * 239.99712 * 2 1 3 28 28 H 1.09003 * 109.47228 * 119.99566 * 2 1 3 29 29 H 0.96998 * 119.99921 * 180.02562 * 8 7 5 30 30 H 1.00898 * 111.00571 * 37.09027 * 13 3 2 31 31 H 1.09003 * 109.47010 * 60.00065 * 16 14 13 32 32 H 1.09005 * 109.46673 * 180.02562 * 16 14 13 33 33 H 1.08997 * 109.47179 * 300.00312 * 16 14 13 34 34 H 1.08995 * 109.50466 * 299.14078 * 19 17 14 35 35 H 1.09002 * 109.49655 * 59.21889 * 19 17 14 36 36 H 1.08997 * 109.52664 * 62.25558 * 20 19 17 37 37 H 1.09007 * 109.52117 * 182.44322 * 20 19 17 38 38 H 1.09003 * 109.50763 * 177.59846 * 21 20 19 39 39 H 1.08998 * 109.50366 * 297.72198 * 21 20 19 40 40 H 1.08998 * 109.45839 * 60.83635 * 22 21 20 41 41 H 1.08994 * 109.46283 * 180.80311 * 22 21 20 42 42 H 1.00897 * 111.00460 * 297.64331 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4440 0.0931 5 6 1.4353 2.1891 1.1611 6 1 0.8262 3.0630 0.9829 7 6 1.6596 1.7566 2.4509 8 7 2.4009 0.6921 2.6679 9 14 0.9164 2.6864 3.8905 10 1 -0.4243 2.1284 4.2010 11 1 1.7976 2.5473 5.0776 12 1 0.7851 4.1227 3.5371 13 7 1.6554 2.0978 -1.2572 14 6 2.6561 1.8551 -2.3049 15 1 3.0628 0.8501 -2.1929 16 6 3.7855 2.8795 -2.1786 17 6 1.9978 1.9886 -3.6796 18 1 1.6703 3.0177 -3.8269 19 6 3.0076 1.6143 -4.7670 20 6 2.3386 1.7300 -6.1394 21 6 1.1066 0.8216 -6.1763 22 6 0.1519 1.2190 -5.0480 23 7 0.8385 1.0906 -3.7563 24 1 -0.3634 0.5947 0.8382 25 1 -0.3634 0.4286 -0.9341 26 1 -0.3634 -1.0231 0.0959 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.5584 0.3875 3.5752 30 1 0.7394 1.7982 -1.5557 31 1 4.2545 2.7843 -1.1992 32 1 4.5278 2.6995 -2.9563 33 1 3.3788 3.8845 -2.2905 34 1 3.8608 2.2909 -4.7198 35 1 3.3463 0.5899 -4.6118 36 1 2.0350 2.7628 -6.3108 37 1 3.0411 1.4226 -6.9142 38 1 0.6016 0.9319 -7.1360 39 1 1.4150 -0.2154 -6.0437 40 1 -0.1668 2.2517 -5.1889 41 1 -0.7198 0.5648 -5.0626 42 1 1.1100 0.1342 -3.5846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386114117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:15 Heat of formation + Delta-G solvation = -20.330018 kcal Electronic energy + Delta-G solvation = -18577.743174 eV Core-core repulsion = 15977.473435 eV Total energy + Delta-G solvation = -2600.269739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17723 -36.37405 -33.58774 -31.70866 -31.34558 -29.70354 -27.95438 -25.93842 -23.67547 -23.27103 -22.75652 -20.41944 -20.09107 -18.78600 -16.31426 -15.46820 -15.18159 -14.78957 -14.53911 -14.34449 -13.97321 -13.41788 -13.12300 -12.74485 -12.44250 -12.30859 -12.07511 -11.91480 -11.46070 -11.26737 -11.11049 -11.06002 -10.91716 -10.83857 -10.64084 -10.44275 -10.40492 -10.08346 -9.74515 -9.56004 -9.35556 -8.82716 -8.23538 -8.12747 -6.95782 -5.86697 -3.86989 3.38937 3.45376 3.50321 4.36621 4.53358 4.72912 4.83068 4.97821 5.09580 5.38753 5.41529 5.44960 5.56441 5.61857 5.73555 5.82880 5.93959 5.98316 6.00847 6.07480 6.13307 6.16078 6.34674 6.48104 6.50357 6.55592 6.71445 6.73740 6.86990 7.08859 7.27097 7.45616 7.48244 7.56233 7.68892 7.86405 8.03611 8.46460 8.80229 8.92307 9.20206 9.76468 11.20323 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.006022 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.894493 B = 4648.802901 C = 4927.807317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.140 4.140 3 C 0.216 3.784 4 H 0.028 0.972 5 C -0.482 4.482 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.093 3.907 15 H 0.028 0.972 16 C -0.136 4.136 17 C 0.088 3.912 18 H 0.083 0.917 19 C -0.152 4.152 20 C -0.118 4.118 21 C -0.158 4.158 22 C 0.060 3.940 23 N -0.677 5.677 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.018 0.982 27 H 0.007 0.993 28 H 0.088 0.912 29 H 0.257 0.743 30 H 0.344 0.656 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -0.289 -15.353 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 C 0.108 3.892 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.018 4.018 15 H 0.046 0.954 16 C -0.194 4.194 17 C -0.022 4.022 18 H 0.102 0.898 19 C -0.192 4.192 20 C -0.155 4.155 21 C -0.198 4.198 22 C -0.070 4.070 23 N -0.306 5.306 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.734 0.669 -14.677 14.710 hybrid contribution 0.181 -1.101 0.001 1.115 sum -0.554 -0.432 -14.675 14.692 Atomic orbital electron populations 1.21587 0.97659 0.98327 1.01129 1.22051 0.95064 1.01216 0.99667 1.19195 0.95546 0.88471 0.86023 0.95413 1.21104 1.29954 1.11255 0.89746 0.92184 1.24909 0.95693 0.95225 0.98659 1.69895 1.39358 1.24200 1.20410 0.86613 0.78854 0.80408 0.82202 1.20960 1.21581 1.19992 1.60812 1.04494 1.62956 1.02991 1.21374 0.93789 0.96578 0.90103 0.95389 1.21804 0.97086 0.99485 1.01061 1.21786 0.88778 0.97413 0.94205 0.89846 1.22321 0.99608 1.01924 0.95362 1.21546 0.96945 0.99841 0.97216 1.22281 0.97592 0.99648 1.00232 1.21976 0.96078 1.01950 0.86986 1.60533 1.27911 1.11284 1.30846 0.91585 0.94560 0.96237 0.97449 0.89412 0.93335 0.83508 0.92202 0.94015 0.92580 0.91110 0.92283 0.91999 0.92472 0.91922 0.92272 0.91046 0.91019 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.41 37.16 0.35 -2.51 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.39 2.13 -68.86 -0.15 5.24 16 4 H 0.03 0.77 7.08 -51.93 -0.37 0.41 16 5 C -0.48 -13.26 7.25 -34.44 -0.25 -13.51 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.53 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.78 11.38 55.43 0.63 -25.15 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.50 6.04 -100.95 -0.61 -15.11 16 14 C 0.09 1.65 2.17 -67.71 -0.15 1.50 16 15 H 0.03 0.54 7.24 -51.93 -0.38 0.16 16 16 C -0.14 -2.31 9.15 37.16 0.34 -1.97 16 17 C 0.09 1.27 2.14 -67.72 -0.14 1.13 16 18 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 19 C -0.15 -1.84 5.09 -26.65 -0.14 -1.98 16 20 C -0.12 -1.22 6.00 -26.61 -0.16 -1.38 16 21 C -0.16 -1.57 6.08 -26.65 -0.16 -1.73 16 22 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 23 N -0.68 -9.41 5.33 -106.76 -0.57 -9.98 16 24 H 0.07 1.60 6.85 -51.93 -0.36 1.25 16 25 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.01 0.15 7.51 -51.93 -0.39 -0.24 16 28 H 0.09 2.36 6.23 -51.93 -0.32 2.03 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.34 7.23 5.26 -39.29 -0.21 7.02 16 31 H 0.06 1.15 7.41 -51.93 -0.38 0.77 16 32 H 0.04 0.59 6.58 -51.93 -0.34 0.25 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.34 4.76 8.79 -39.29 -0.35 4.41 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -27.70 314.08 -9.11 -36.81 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.55 Total: 8.59 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.72 Total: -16.61 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.55 Total: -50.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.70 -9.11 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.479 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds