Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53004 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46827 * 305.54689 * 3 2 1 5 5 C 1.50700 * 109.47296 * 185.54960 * 3 2 1 6 6 H 1.08002 * 119.99752 * 244.55163 * 5 3 2 7 7 C 1.37871 * 120.00277 * 64.55106 * 5 3 2 8 8 N 1.31519 * 119.99939 * 196.29779 * 7 5 3 9 9 Si 1.86804 * 120.00051 * 16.29305 * 7 5 3 10 10 H 1.48499 * 109.46920 * 91.32222 * 9 7 5 11 11 H 1.48500 * 109.46964 * 211.32180 * 9 7 5 12 12 H 1.48500 * 109.47027 * 331.32451 * 9 7 5 13 13 N 1.46894 * 109.46783 * 65.54549 * 3 2 1 14 14 C 1.46908 * 110.99727 * 203.18549 * 13 3 2 15 15 H 1.08998 * 109.47092 * 323.00717 * 14 13 3 16 16 C 1.52999 * 109.47305 * 83.01117 * 14 13 3 17 17 C 1.53003 * 109.47022 * 203.01445 * 14 13 3 18 18 H 1.09005 * 109.46160 * 299.97919 * 17 14 13 19 19 C 1.53035 * 109.46568 * 59.94428 * 17 14 13 20 20 C 1.53119 * 109.27810 * 179.19678 * 19 17 14 21 21 C 1.53121 * 109.15838 * 302.34563 * 20 19 17 22 22 C 1.53031 * 109.27839 * 57.65855 * 21 20 19 23 23 N 1.46843 * 109.46069 * 180.02562 * 17 14 13 24 24 H 1.08999 * 109.47248 * 304.66277 * 1 2 3 25 25 H 1.09000 * 109.47387 * 64.66473 * 1 2 3 26 26 H 1.09002 * 109.47350 * 184.66620 * 1 2 3 27 27 H 1.09009 * 109.47453 * 239.99995 * 2 1 3 28 28 H 1.08998 * 109.47426 * 119.99747 * 2 1 3 29 29 H 0.97007 * 119.99727 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00002 * 79.23357 * 13 3 2 31 31 H 1.08995 * 109.46827 * 186.04809 * 16 14 13 32 32 H 1.08995 * 109.46911 * 306.05724 * 16 14 13 33 33 H 1.09007 * 109.46934 * 66.04736 * 16 14 13 34 34 H 1.09001 * 109.49947 * 299.13906 * 19 17 14 35 35 H 1.08995 * 109.49978 * 59.25388 * 19 17 14 36 36 H 1.09000 * 109.51971 * 182.44299 * 20 19 17 37 37 H 1.08995 * 109.52473 * 62.25288 * 20 19 17 38 38 H 1.09001 * 109.50698 * 297.71039 * 21 20 19 39 39 H 1.09005 * 109.49731 * 177.59630 * 21 20 19 40 40 H 1.08996 * 109.46218 * 180.80442 * 22 21 20 41 41 H 1.08996 * 109.46632 * 60.83409 * 22 21 20 42 42 H 1.00897 * 111.00237 * 54.14091 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8362 5 6 3.5407 1.4447 -0.1374 6 1 4.1560 1.8200 0.6670 7 6 4.1281 0.9677 -1.2899 8 7 5.4086 0.6676 -1.2996 9 14 3.1054 0.7476 -2.8375 10 1 3.1647 1.9888 -3.6506 11 1 3.6429 -0.3885 -3.6285 12 1 1.6958 0.4676 -2.4636 13 7 1.6626 2.0952 1.2607 14 6 1.6242 3.5557 1.1065 15 1 2.4283 3.8721 0.4422 16 6 0.2774 3.9704 0.5107 17 6 1.8025 4.2178 2.4742 18 1 0.9981 3.9015 3.1385 19 6 3.1491 3.8018 3.0706 20 6 3.3319 4.4825 4.4299 21 6 3.2395 6.0001 4.2484 22 6 1.8902 6.3523 3.6180 23 7 1.7635 5.6776 2.3199 24 1 -0.3634 0.5845 0.8453 25 1 -0.3634 0.4397 -0.9288 26 1 -0.3634 -1.0243 0.0836 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8220 0.3323 -2.1106 30 1 2.2857 1.8267 2.0075 31 1 0.2886 5.0390 0.2964 32 1 0.1022 3.4166 -0.4116 33 1 -0.5180 3.7508 1.2230 34 1 3.1712 2.7197 3.1995 35 1 3.9532 4.1055 2.4004 36 1 4.3086 4.2233 4.8386 37 1 2.5502 4.1490 5.1124 38 1 4.0451 6.3385 3.5968 39 1 3.3262 6.4885 5.2191 40 1 1.8271 7.4309 3.4743 41 1 1.0854 6.0261 4.2767 42 1 0.9241 5.9683 1.8414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386114119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = -17.722273 kcal Electronic energy + Delta-G solvation = -18589.234192 eV Core-core repulsion = 15989.077533 eV Total energy + Delta-G solvation = -2600.156659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96747 -36.39241 -33.54085 -32.00824 -31.76132 -29.80213 -28.59848 -26.42550 -23.91840 -22.82354 -22.37166 -20.08243 -19.49134 -19.31746 -17.08201 -16.34796 -15.25097 -14.75692 -14.37504 -13.92116 -13.64109 -13.30459 -13.18863 -13.07446 -12.92490 -12.70231 -12.33193 -11.78219 -11.75290 -11.40882 -11.24791 -11.14078 -10.83278 -10.72597 -10.58749 -10.54476 -10.28200 -10.01775 -9.74970 -9.66898 -9.51704 -9.17353 -8.41365 -8.22039 -7.27260 -6.11660 -4.06311 3.29204 3.38769 3.42696 4.31140 4.42981 4.96084 5.00592 5.09857 5.20016 5.26295 5.39097 5.50562 5.59015 5.72410 5.80320 5.89692 6.01235 6.05562 6.09609 6.11828 6.18171 6.23547 6.28269 6.34686 6.40624 6.43536 6.64527 6.67323 6.78424 6.83678 6.87654 7.10063 7.23484 7.32529 7.41095 7.57171 7.65907 8.13130 8.44638 8.56155 8.96225 9.56487 11.01394 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.007247 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.116343 B = 3862.532567 C = 4261.258248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.189 3.811 4 H 0.028 0.972 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.679 5.679 14 C 0.091 3.909 15 H 0.060 0.940 16 C -0.138 4.138 17 C 0.094 3.906 18 H 0.037 0.963 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.061 3.939 23 N -0.685 5.685 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.333 0.667 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 7.847 8.233 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.079 3.921 4 H 0.046 0.954 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.311 5.311 14 C -0.020 4.020 15 H 0.078 0.922 16 C -0.197 4.197 17 C -0.015 4.015 18 H 0.055 0.945 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.068 4.068 23 N -0.318 5.318 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.280 7.740 7.879 13.804 hybrid contribution -0.198 -0.139 -0.669 0.712 sum -8.479 7.601 7.209 13.477 Atomic orbital electron populations 1.21749 0.98083 0.99232 1.00996 1.21793 0.93249 0.99153 1.00529 1.19480 0.94037 0.90619 0.87931 0.95386 1.21692 0.90668 1.43006 1.03352 0.91072 1.24937 0.94663 0.93953 0.98885 1.70014 1.11763 1.42882 1.28124 0.87208 0.82346 0.77767 0.83822 1.20783 1.21498 1.17430 1.60885 1.56557 1.04785 1.08837 1.21326 0.96966 0.89298 0.94365 0.92218 1.21817 0.97382 0.99405 1.01052 1.21557 0.96597 0.86753 0.96627 0.94495 1.21661 0.97619 1.00031 0.96008 1.21567 1.01304 0.95222 0.97615 1.21585 0.97772 0.96362 0.99795 1.21855 0.96654 0.98220 0.90118 1.60261 1.44663 1.06524 1.20356 0.92054 0.94530 0.95071 0.93159 0.93050 0.92801 0.84726 0.93335 0.92533 0.93334 0.91069 0.90825 0.92037 0.92688 0.91185 0.92233 0.91321 0.95779 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.86 37.15 0.37 -2.29 16 2 C -0.11 -2.37 4.90 -26.73 -0.13 -2.50 16 3 C 0.19 4.33 1.33 -68.87 -0.09 4.24 16 4 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 5 C -0.55 -14.92 8.61 -34.44 -0.30 -15.21 16 6 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 7 C 0.08 2.24 5.31 -17.82 -0.09 2.14 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.86 21.24 25.80 -169.99 -4.39 16.85 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.83 5.55 56.52 0.31 -5.51 16 13 N -0.68 -13.36 5.44 -100.95 -0.55 -13.91 16 14 C 0.09 1.64 2.25 -67.71 -0.15 1.48 16 15 H 0.06 1.28 7.58 -51.93 -0.39 0.89 16 16 C -0.14 -2.19 8.91 37.16 0.33 -1.86 16 17 C 0.09 1.45 2.23 -67.72 -0.15 1.30 16 18 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 19 C -0.12 -1.82 5.11 -26.65 -0.14 -1.96 16 20 C -0.12 -1.55 6.00 -26.61 -0.16 -1.71 16 21 C -0.12 -1.39 6.09 -26.65 -0.16 -1.56 16 22 C 0.06 0.72 6.55 -3.84 -0.03 0.69 16 23 N -0.68 -9.48 6.49 -106.77 -0.69 -10.17 16 24 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.16 5.04 -51.92 -0.26 0.90 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.33 6.66 5.91 -39.29 -0.23 6.43 16 31 H 0.05 0.67 6.84 -51.93 -0.36 0.31 16 32 H 0.06 0.97 7.19 -51.93 -0.37 0.60 16 33 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 1.18 6.25 -51.93 -0.32 0.85 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.34 4.29 6.92 -39.29 -0.27 4.02 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -28.58 311.56 -8.48 -37.06 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.62 Total: 8.88 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.70 Total: -17.23 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.47 Total: -50.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.39 Total: 16.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.58 -8.48 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.340 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds