Wall clock time and date at job start Mon Mar 30 2020 03:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53004 * 109.47305 * 2 1 4 4 H 1.09004 * 109.46827 * 305.54689 * 3 2 1 5 5 C 1.50700 * 109.47296 * 185.54960 * 3 2 1 6 6 H 1.08002 * 119.99752 * 244.55163 * 5 3 2 7 7 C 1.37871 * 120.00277 * 64.55106 * 5 3 2 8 8 N 1.31519 * 119.99939 * 196.29779 * 7 5 3 9 9 Si 1.86804 * 120.00051 * 16.29305 * 7 5 3 10 10 H 1.48499 * 109.46920 * 91.32222 * 9 7 5 11 11 H 1.48500 * 109.46964 * 211.32180 * 9 7 5 12 12 H 1.48500 * 109.47027 * 331.32451 * 9 7 5 13 13 N 1.46894 * 109.46783 * 65.54549 * 3 2 1 14 14 C 1.46908 * 110.99727 * 203.18549 * 13 3 2 15 15 H 1.08998 * 109.47092 * 323.00717 * 14 13 3 16 16 C 1.52999 * 109.47305 * 83.01117 * 14 13 3 17 17 C 1.53003 * 109.47022 * 203.01445 * 14 13 3 18 18 H 1.09005 * 109.46160 * 299.97919 * 17 14 13 19 19 C 1.53035 * 109.46568 * 59.94428 * 17 14 13 20 20 C 1.53119 * 109.27810 * 179.19678 * 19 17 14 21 21 C 1.53121 * 109.15838 * 302.34563 * 20 19 17 22 22 C 1.53031 * 109.27839 * 57.65855 * 21 20 19 23 23 N 1.46843 * 109.46069 * 180.02562 * 17 14 13 24 24 H 1.08999 * 109.47248 * 304.66277 * 1 2 3 25 25 H 1.09000 * 109.47387 * 64.66473 * 1 2 3 26 26 H 1.09002 * 109.47350 * 184.66620 * 1 2 3 27 27 H 1.09009 * 109.47453 * 239.99995 * 2 1 3 28 28 H 1.08998 * 109.47426 * 119.99747 * 2 1 3 29 29 H 0.97007 * 119.99727 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00002 * 79.23357 * 13 3 2 31 31 H 1.08995 * 109.46827 * 186.04809 * 16 14 13 32 32 H 1.08995 * 109.46911 * 306.05724 * 16 14 13 33 33 H 1.09007 * 109.46934 * 66.04736 * 16 14 13 34 34 H 1.09001 * 109.49947 * 299.13906 * 19 17 14 35 35 H 1.08995 * 109.49978 * 59.25388 * 19 17 14 36 36 H 1.09000 * 109.51971 * 182.44299 * 20 19 17 37 37 H 1.08995 * 109.52473 * 62.25288 * 20 19 17 38 38 H 1.09001 * 109.50698 * 297.71039 * 21 20 19 39 39 H 1.09005 * 109.49731 * 177.59630 * 21 20 19 40 40 H 1.08996 * 109.46218 * 180.80442 * 22 21 20 41 41 H 1.08996 * 109.46632 * 60.83409 * 22 21 20 42 42 H 1.00897 * 111.00237 * 54.14091 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8362 5 6 3.5407 1.4447 -0.1374 6 1 4.1560 1.8200 0.6670 7 6 4.1281 0.9677 -1.2899 8 7 5.4086 0.6676 -1.2996 9 14 3.1054 0.7476 -2.8375 10 1 3.1647 1.9888 -3.6506 11 1 3.6429 -0.3885 -3.6285 12 1 1.6958 0.4676 -2.4636 13 7 1.6626 2.0952 1.2607 14 6 1.6242 3.5557 1.1065 15 1 2.4283 3.8721 0.4422 16 6 0.2774 3.9704 0.5107 17 6 1.8025 4.2178 2.4742 18 1 0.9981 3.9015 3.1385 19 6 3.1491 3.8018 3.0706 20 6 3.3319 4.4825 4.4299 21 6 3.2395 6.0001 4.2484 22 6 1.8902 6.3523 3.6180 23 7 1.7635 5.6776 2.3199 24 1 -0.3634 0.5845 0.8453 25 1 -0.3634 0.4397 -0.9288 26 1 -0.3634 -1.0243 0.0836 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8220 0.3323 -2.1106 30 1 2.2857 1.8267 2.0075 31 1 0.2886 5.0390 0.2964 32 1 0.1022 3.4166 -0.4116 33 1 -0.5180 3.7508 1.2230 34 1 3.1712 2.7197 3.1995 35 1 3.9532 4.1055 2.4004 36 1 4.3086 4.2233 4.8386 37 1 2.5502 4.1490 5.1124 38 1 4.0451 6.3385 3.5968 39 1 3.3262 6.4885 5.2191 40 1 1.8271 7.4309 3.4743 41 1 1.0854 6.0261 4.2767 42 1 0.9241 5.9683 1.8414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386114119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:17 Heat of formation + Delta-G solvation = -37.848793 kcal Electronic energy + Delta-G solvation = -18590.106943 eV Core-core repulsion = 15989.077533 eV Total energy + Delta-G solvation = -2601.029410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23170 -37.97041 -35.11731 -33.91274 -33.04579 -31.15320 -29.98633 -28.27110 -25.25895 -24.09497 -23.93797 -21.56690 -21.09508 -20.54218 -19.11418 -17.63213 -16.90830 -16.48674 -15.55566 -15.36000 -15.14986 -14.84417 -14.51593 -14.33238 -14.30053 -14.13079 -13.92085 -13.43242 -13.31911 -12.98918 -12.73397 -12.55705 -12.34430 -12.22358 -12.12223 -11.85663 -11.69330 -11.52744 -11.38214 -11.25291 -11.09116 -10.93286 -10.58210 -9.30019 -9.01987 -8.33035 -6.31115 1.31355 1.35516 1.45765 2.33719 3.02423 3.16741 3.71895 3.85482 3.87403 4.04287 4.25035 4.33223 4.41945 4.47501 4.57670 4.62080 4.68829 4.73811 4.77705 4.84632 4.90986 4.95745 5.01008 5.04467 5.11111 5.16390 5.23996 5.27067 5.29402 5.36302 5.46314 5.53248 5.54196 5.59839 5.74963 6.12982 6.20663 6.45072 6.56950 6.72142 6.85716 7.35466 8.83573 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.007247 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.116343 B = 3862.532567 C = 4261.258248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C 0.196 3.804 4 H 0.024 0.976 5 C -0.546 4.546 6 H 0.030 0.970 7 C 0.021 3.979 8 N -0.941 5.941 9 Si 0.923 3.077 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.225 1.225 13 N -0.665 5.665 14 C 0.090 3.910 15 H 0.016 0.984 16 C -0.131 4.131 17 C 0.107 3.893 18 H 0.048 0.952 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.116 4.116 22 C 0.060 3.940 23 N -0.697 5.697 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.329 0.671 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 8.663 8.870 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.042 0.958 5 C -0.585 4.585 6 H 0.048 0.952 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.747 3.253 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.148 1.148 13 N -0.296 5.296 14 C -0.021 4.021 15 H 0.034 0.966 16 C -0.189 4.189 17 C -0.003 4.003 18 H 0.065 0.935 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.069 4.069 23 N -0.331 5.331 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.197 8.572 8.531 16.481 hybrid contribution 0.788 -0.341 -0.775 1.157 sum -10.409 8.231 7.755 15.370 Atomic orbital electron populations 1.21640 0.94898 1.00975 1.01513 1.21724 0.96034 0.97484 0.99638 1.19342 0.90849 0.91982 0.89235 0.95811 1.22006 0.92987 1.41519 1.02000 0.95168 1.25775 0.95717 0.94015 1.02211 1.70150 1.13849 1.44965 1.29047 0.86216 0.81999 0.77571 0.79473 1.20727 1.21327 1.14751 1.60942 1.55540 1.05960 1.07199 1.21389 0.97041 0.88229 0.95435 0.96626 1.21749 0.96030 1.00549 1.00543 1.21325 0.96203 0.87901 0.94844 0.93451 1.21608 0.96978 0.99411 0.97324 1.21549 1.01991 0.96039 0.95720 1.21604 0.97533 0.95343 1.00945 1.21960 0.96693 0.99108 0.89093 1.60211 1.45444 1.05339 1.22118 0.91369 0.94124 0.92779 0.94512 0.93646 0.92783 0.85188 0.91223 0.93916 0.91564 0.92595 0.94459 0.91866 0.91182 0.92845 0.89520 0.89370 0.94458 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.86 71.98 0.71 -3.82 16 2 C -0.11 -4.69 4.90 30.59 0.15 -4.54 16 3 C 0.20 9.01 1.33 44.17 0.06 9.07 16 4 H 0.02 1.13 5.59 -2.38 -0.01 1.12 16 5 C -0.55 -30.91 8.61 25.60 0.22 -30.69 16 6 H 0.03 1.91 7.98 -2.91 -0.02 1.88 16 7 C 0.02 1.25 5.31 84.65 0.45 1.70 16 8 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.92 44.25 25.80 68.60 1.77 46.02 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.22 -9.77 5.55 99.48 0.55 -9.22 16 13 N -0.67 -26.23 5.44 -473.29 -2.58 -28.81 16 14 C 0.09 3.21 2.25 44.91 0.10 3.31 16 15 H 0.02 0.70 7.58 -2.39 -0.02 0.68 16 16 C -0.13 -3.87 8.91 71.98 0.64 -3.23 16 17 C 0.11 3.22 2.23 44.94 0.10 3.32 16 18 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 19 C -0.11 -3.74 5.11 30.65 0.16 -3.58 16 20 C -0.12 -2.88 6.00 30.67 0.18 -2.70 16 21 C -0.12 -2.54 6.09 30.64 0.19 -2.35 16 22 C 0.06 1.25 6.55 86.32 0.57 1.81 16 23 N -0.70 -18.13 6.49 -491.70 -3.19 -21.32 16 24 H 0.07 2.23 7.65 -2.39 -0.02 2.21 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.64 5.04 -2.38 -0.01 1.63 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 30 H 0.33 13.51 5.91 -89.69 -0.53 12.98 16 31 H 0.07 1.75 6.84 -2.39 -0.02 1.73 16 32 H 0.04 1.38 7.19 -2.39 -0.02 1.36 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.94 6.25 -2.39 -0.01 1.93 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.35 7.91 6.92 -89.70 -0.62 7.29 16 Total: -1.00 -64.03 311.56 -0.50 -64.53 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.32 Total: 30.14 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.52 Total: -31.68 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.47 Total: -109.01 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.77 Total: 46.02 kcal Total: -64.03 -0.50 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.679 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds