Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46869 * 2 1 4 4 H 1.08997 * 109.47300 * 305.80594 * 3 2 1 5 5 C 1.50697 * 109.47376 * 185.80393 * 3 2 1 6 6 H 1.08002 * 120.00438 * 240.00191 * 5 3 2 7 7 C 1.37875 * 119.99996 * 59.99526 * 5 3 2 8 8 N 1.31515 * 120.00598 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99949 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46903 * 269.99708 * 9 7 5 11 11 H 1.48498 * 109.47284 * 149.99516 * 9 7 5 12 12 H 1.48496 * 109.47111 * 29.99335 * 9 7 5 13 13 N 1.46904 * 109.47399 * 65.80495 * 3 2 1 14 14 C 1.46898 * 111.00249 * 206.98448 * 13 3 2 15 15 H 1.09003 * 109.46884 * 322.07595 * 14 13 3 16 16 C 1.52997 * 109.47334 * 82.07518 * 14 13 3 17 17 C 1.53001 * 109.47100 * 202.08236 * 14 13 3 18 18 H 1.09003 * 109.46128 * 298.54767 * 17 14 13 19 19 C 1.53036 * 109.46299 * 178.58244 * 17 14 13 20 20 C 1.53121 * 109.28163 * 180.80121 * 19 17 14 21 21 C 1.53118 * 109.15607 * 57.65027 * 20 19 17 22 22 C 1.53031 * 109.28441 * 302.35017 * 21 20 19 23 23 N 1.46844 * 109.46555 * 58.52888 * 17 14 13 24 24 H 1.08991 * 109.47694 * 304.73593 * 1 2 3 25 25 H 1.08999 * 109.46753 * 64.74059 * 1 2 3 26 26 H 1.09003 * 109.46665 * 184.73158 * 1 2 3 27 27 H 1.08994 * 109.47736 * 240.00074 * 2 1 3 28 28 H 1.08996 * 109.46907 * 119.99695 * 2 1 3 29 29 H 0.97001 * 120.00592 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00175 * 83.02448 * 13 3 2 31 31 H 1.09002 * 109.46664 * 65.68470 * 16 14 13 32 32 H 1.09002 * 109.46924 * 185.68031 * 16 14 13 33 33 H 1.08998 * 109.47525 * 305.68080 * 16 14 13 34 34 H 1.08991 * 109.50429 * 300.74517 * 19 17 14 35 35 H 1.09001 * 109.50034 * 60.85991 * 19 17 14 36 36 H 1.09003 * 109.51814 * 297.75106 * 20 19 17 37 37 H 1.08991 * 109.52391 * 177.55861 * 20 19 17 38 38 H 1.09000 * 109.49915 * 182.40316 * 21 20 19 39 39 H 1.08998 * 109.53592 * 62.31558 * 21 20 19 40 40 H 1.09006 * 109.46081 * 299.16588 * 22 21 20 41 41 H 1.08997 * 109.45656 * 179.19109 * 22 21 20 42 42 H 1.00904 * 111.00036 * 305.85268 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5942 1.9855 -0.8334 5 6 3.5400 1.4451 -0.1437 6 1 4.1556 1.8860 0.6264 7 6 4.1268 0.8843 -1.2582 8 7 5.4359 0.8860 -1.3835 9 14 3.0622 0.1221 -2.5906 10 1 2.8445 -1.3155 -2.2882 11 1 3.7425 0.2541 -3.9039 12 1 1.7531 0.8215 -2.6387 13 7 1.6680 2.0934 1.2633 14 6 1.5410 3.5465 1.0895 15 1 2.3136 3.8996 0.4064 16 6 0.1621 3.8726 0.5122 17 6 1.7033 4.2384 2.4444 18 1 0.9153 3.9046 3.1194 19 6 1.6062 5.7543 2.2578 20 6 1.7892 6.4433 3.6129 21 6 3.1394 6.0329 4.2070 22 6 3.1921 4.5091 4.3371 23 7 3.0129 3.8971 3.0143 24 1 -0.3634 0.5855 0.8444 25 1 -0.3633 0.4385 -0.9294 26 1 -0.3633 -1.0242 0.0848 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8487 0.4919 -2.1678 30 1 2.3299 1.8729 1.9923 31 1 -0.6070 3.6114 1.2391 32 1 0.1043 4.9379 0.2889 33 1 0.0067 3.3007 -0.4026 34 1 2.3853 6.0872 1.5721 35 1 0.6282 6.0087 1.8493 36 1 0.9876 6.1404 4.2866 37 1 1.7640 7.5246 3.4781 38 1 3.2569 6.4865 5.1911 39 1 3.9432 6.3703 3.5526 40 1 2.3971 4.1737 5.0031 41 1 4.1579 4.2128 4.7464 42 1 3.1383 2.8969 3.0587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386114121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = -12.435436 kcal Electronic energy + Delta-G solvation = -18592.337507 eV Core-core repulsion = 15992.410102 eV Total energy + Delta-G solvation = -2599.927405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.97262 -36.41955 -33.58369 -31.89360 -31.86345 -30.07190 -28.42190 -26.44533 -23.66865 -23.14534 -22.31801 -20.21193 -19.54359 -19.34533 -17.09333 -16.26939 -15.08168 -14.97468 -14.45996 -14.18136 -13.55547 -13.45723 -13.22331 -13.04109 -12.76610 -12.54541 -12.36525 -11.92436 -11.71367 -11.43445 -11.32975 -11.18544 -10.91232 -10.77614 -10.65946 -10.55830 -10.28422 -10.08739 -9.81309 -9.68060 -9.38261 -9.11650 -8.52069 -8.07997 -7.32429 -6.06332 -4.06352 3.28741 3.39432 3.41654 4.39443 4.42409 4.87563 4.97071 5.02573 5.19667 5.27085 5.48078 5.50256 5.60633 5.71439 5.81183 5.87284 5.95967 6.01656 6.03779 6.08978 6.11835 6.12760 6.19076 6.25086 6.29543 6.47510 6.53294 6.62107 6.72133 6.77789 6.81703 7.02594 7.15053 7.31517 7.41547 7.61234 7.70900 8.09812 8.41852 8.56019 8.99177 9.57259 11.06551 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.007158 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.944649 B = 3911.005641 C = 4372.386375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.185 3.815 4 H 0.032 0.968 5 C -0.541 4.541 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.266 1.266 13 N -0.676 5.676 14 C 0.091 3.909 15 H 0.058 0.942 16 C -0.136 4.136 17 C 0.094 3.906 18 H 0.037 0.963 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.061 3.939 23 N -0.683 5.683 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 7.446 8.513 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.579 4.579 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.191 1.191 13 N -0.308 5.308 14 C -0.020 4.020 15 H 0.076 0.924 16 C -0.195 4.195 17 C -0.016 4.016 18 H 0.055 0.945 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.069 4.069 23 N -0.318 5.318 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.024 7.767 7.996 14.342 hybrid contribution 0.046 -0.886 -0.375 0.963 sum -8.978 6.881 7.622 13.640 Atomic orbital electron populations 1.21748 0.97719 0.99433 1.01225 1.21821 0.93719 0.99571 1.00277 1.19573 0.94452 0.90410 0.88035 0.95005 1.21777 0.90525 1.38729 1.06904 0.90478 1.25000 0.94717 0.95433 0.97887 1.69922 1.09227 1.45317 1.29126 0.86856 0.80769 0.79781 0.80785 1.20610 1.22732 1.19057 1.60899 1.53328 1.06935 1.09655 1.21396 0.96737 0.89234 0.94611 0.92387 1.21819 0.96947 0.99727 1.00970 1.21576 0.89301 0.94923 0.95846 0.94547 1.21653 1.01848 0.94447 0.97119 1.21565 0.97258 0.99697 0.97163 1.21582 0.98058 0.95486 1.00388 1.21854 1.00174 0.94913 0.89953 1.60262 1.31827 1.16472 1.23226 0.91790 0.94398 0.94918 0.93799 0.92552 0.92786 0.85249 0.93068 0.93293 0.92562 0.91118 0.91593 0.92666 0.92247 0.92242 0.91160 0.95830 0.91113 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.86 37.16 0.37 -2.29 16 2 C -0.12 -2.53 5.10 -26.73 -0.14 -2.67 16 3 C 0.18 4.25 1.34 -68.86 -0.09 4.16 16 4 H 0.03 0.78 5.94 -51.93 -0.31 0.47 16 5 C -0.54 -14.83 8.93 -34.44 -0.31 -15.13 16 6 H 0.08 2.30 7.96 -52.49 -0.42 1.88 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.89 22.19 24.42 -169.99 -4.15 18.04 16 10 H -0.28 -6.83 6.82 56.52 0.39 -6.45 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.68 -13.22 5.46 -100.96 -0.55 -13.78 16 14 C 0.09 1.62 2.26 -67.71 -0.15 1.47 16 15 H 0.06 1.24 7.74 -51.93 -0.40 0.84 16 16 C -0.14 -2.15 8.91 37.16 0.33 -1.82 16 17 C 0.09 1.43 2.24 -67.72 -0.15 1.28 16 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.11 -1.51 5.03 -26.65 -0.13 -1.64 16 20 C -0.12 -1.37 6.00 -26.61 -0.16 -1.53 16 21 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 22 C 0.06 0.79 6.55 -3.84 -0.03 0.77 16 23 N -0.68 -10.82 6.50 -106.77 -0.69 -11.51 16 24 H 0.06 1.13 7.65 -51.93 -0.40 0.74 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 1.03 3.22 -51.93 -0.17 0.86 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.33 6.46 5.89 -39.29 -0.23 6.23 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.67 6.79 -51.93 -0.35 0.32 16 33 H 0.06 0.96 7.17 -51.93 -0.37 0.59 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.81 6.64 -51.93 -0.34 0.46 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.35 5.74 6.59 -39.29 -0.26 5.48 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -28.96 310.18 -8.18 -37.14 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.51 Total: 9.13 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.72 Total: -16.99 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.47 Total: -52.00 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.15 Total: 18.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.96 -8.18 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.709 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds