Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46869 * 2 1 4 4 H 1.08997 * 109.47300 * 305.80594 * 3 2 1 5 5 C 1.50697 * 109.47376 * 185.80393 * 3 2 1 6 6 H 1.08002 * 120.00438 * 240.00191 * 5 3 2 7 7 C 1.37875 * 119.99996 * 59.99526 * 5 3 2 8 8 N 1.31515 * 120.00598 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99949 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46903 * 269.99708 * 9 7 5 11 11 H 1.48498 * 109.47284 * 149.99516 * 9 7 5 12 12 H 1.48496 * 109.47111 * 29.99335 * 9 7 5 13 13 N 1.46904 * 109.47399 * 65.80495 * 3 2 1 14 14 C 1.46898 * 111.00249 * 206.98448 * 13 3 2 15 15 H 1.09003 * 109.46884 * 322.07595 * 14 13 3 16 16 C 1.52997 * 109.47334 * 82.07518 * 14 13 3 17 17 C 1.53001 * 109.47100 * 202.08236 * 14 13 3 18 18 H 1.09003 * 109.46128 * 298.54767 * 17 14 13 19 19 C 1.53036 * 109.46299 * 178.58244 * 17 14 13 20 20 C 1.53121 * 109.28163 * 180.80121 * 19 17 14 21 21 C 1.53118 * 109.15607 * 57.65027 * 20 19 17 22 22 C 1.53031 * 109.28441 * 302.35017 * 21 20 19 23 23 N 1.46844 * 109.46555 * 58.52888 * 17 14 13 24 24 H 1.08991 * 109.47694 * 304.73593 * 1 2 3 25 25 H 1.08999 * 109.46753 * 64.74059 * 1 2 3 26 26 H 1.09003 * 109.46665 * 184.73158 * 1 2 3 27 27 H 1.08994 * 109.47736 * 240.00074 * 2 1 3 28 28 H 1.08996 * 109.46907 * 119.99695 * 2 1 3 29 29 H 0.97001 * 120.00592 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00175 * 83.02448 * 13 3 2 31 31 H 1.09002 * 109.46664 * 65.68470 * 16 14 13 32 32 H 1.09002 * 109.46924 * 185.68031 * 16 14 13 33 33 H 1.08998 * 109.47525 * 305.68080 * 16 14 13 34 34 H 1.08991 * 109.50429 * 300.74517 * 19 17 14 35 35 H 1.09001 * 109.50034 * 60.85991 * 19 17 14 36 36 H 1.09003 * 109.51814 * 297.75106 * 20 19 17 37 37 H 1.08991 * 109.52391 * 177.55861 * 20 19 17 38 38 H 1.09000 * 109.49915 * 182.40316 * 21 20 19 39 39 H 1.08998 * 109.53592 * 62.31558 * 21 20 19 40 40 H 1.09006 * 109.46081 * 299.16588 * 22 21 20 41 41 H 1.08997 * 109.45656 * 179.19109 * 22 21 20 42 42 H 1.00904 * 111.00036 * 305.85268 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5942 1.9855 -0.8334 5 6 3.5400 1.4451 -0.1437 6 1 4.1556 1.8860 0.6264 7 6 4.1268 0.8843 -1.2582 8 7 5.4359 0.8860 -1.3835 9 14 3.0622 0.1221 -2.5906 10 1 2.8445 -1.3155 -2.2882 11 1 3.7425 0.2541 -3.9039 12 1 1.7531 0.8215 -2.6387 13 7 1.6680 2.0934 1.2633 14 6 1.5410 3.5465 1.0895 15 1 2.3136 3.8996 0.4064 16 6 0.1621 3.8726 0.5122 17 6 1.7033 4.2384 2.4444 18 1 0.9153 3.9046 3.1194 19 6 1.6062 5.7543 2.2578 20 6 1.7892 6.4433 3.6129 21 6 3.1394 6.0329 4.2070 22 6 3.1921 4.5091 4.3371 23 7 3.0129 3.8971 3.0143 24 1 -0.3634 0.5855 0.8444 25 1 -0.3633 0.4385 -0.9294 26 1 -0.3633 -1.0242 0.0848 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8487 0.4919 -2.1678 30 1 2.3299 1.8729 1.9923 31 1 -0.6070 3.6114 1.2391 32 1 0.1043 4.9379 0.2889 33 1 0.0067 3.3007 -0.4026 34 1 2.3853 6.0872 1.5721 35 1 0.6282 6.0087 1.8493 36 1 0.9876 6.1404 4.2866 37 1 1.7640 7.5246 3.4781 38 1 3.2569 6.4865 5.1911 39 1 3.9432 6.3703 3.5526 40 1 2.3971 4.1737 5.0031 41 1 4.1579 4.2128 4.7464 42 1 3.1383 2.8969 3.0587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386114121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = -33.132008 kcal Electronic energy + Delta-G solvation = -18593.234978 eV Core-core repulsion = 15992.410102 eV Total energy + Delta-G solvation = -2600.824875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22534 -37.99461 -35.15401 -33.90278 -33.00168 -31.46456 -29.76155 -28.28857 -24.99484 -24.42739 -23.85416 -21.72091 -21.09546 -20.51304 -19.10308 -17.62711 -16.96916 -16.43876 -15.80851 -15.42752 -15.09982 -14.90798 -14.53484 -14.40580 -14.16597 -13.92467 -13.76911 -13.61906 -13.29010 -13.06918 -12.82345 -12.47838 -12.37595 -12.19398 -12.10681 -11.89311 -11.64762 -11.55436 -11.30574 -11.18544 -11.12329 -10.97926 -10.64279 -9.28164 -9.05369 -8.29804 -6.33386 1.28822 1.33839 1.44200 2.30777 3.05294 3.21451 3.48395 3.90195 3.98593 4.09889 4.31218 4.33692 4.41204 4.44422 4.49544 4.59112 4.63351 4.70429 4.82987 4.84297 4.87227 4.95152 5.03953 5.05090 5.12175 5.13529 5.19198 5.26953 5.31235 5.34409 5.46427 5.47788 5.51595 5.58944 5.66141 6.15616 6.26091 6.39184 6.46761 6.70562 6.83843 7.34475 8.86483 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.007158 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.944649 B = 3911.005641 C = 4372.386375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.537 4.537 6 H 0.037 0.963 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.249 1.249 13 N -0.662 5.662 14 C 0.090 3.910 15 H 0.013 0.987 16 C -0.129 4.129 17 C 0.101 3.899 18 H 0.046 0.954 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.116 4.116 22 C 0.058 3.942 23 N -0.706 5.706 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.327 0.673 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 7.848 9.298 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.040 0.960 5 C -0.576 4.576 6 H 0.055 0.945 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.173 1.173 13 N -0.293 5.293 14 C -0.021 4.021 15 H 0.032 0.968 16 C -0.188 4.188 17 C -0.009 4.009 18 H 0.063 0.937 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.071 4.071 23 N -0.340 5.340 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.840 8.186 8.804 16.873 hybrid contribution 0.994 -0.947 -0.530 1.472 sum -10.846 7.239 8.274 15.443 Atomic orbital electron populations 1.21652 0.94549 1.01232 1.01734 1.21757 0.96519 0.97755 0.99522 1.19394 0.91169 0.91866 0.89284 0.95994 1.22090 0.92896 1.37085 1.05515 0.94474 1.25838 0.95799 0.96310 1.00472 1.70073 1.11258 1.47288 1.30175 0.85858 0.79529 0.79578 0.77442 1.19285 1.23063 1.17296 1.60948 1.52402 1.08060 1.07902 1.21482 0.96862 0.88123 0.95617 0.96838 1.21760 0.95591 1.00900 1.00500 1.21522 0.89267 0.95962 0.94154 0.93661 1.21659 1.02009 0.93041 0.98228 1.21554 0.97245 1.00514 0.95888 1.21598 0.97885 0.94462 1.01459 1.21959 1.00682 0.95735 0.88677 1.60312 1.32461 1.15963 1.25262 0.91018 0.94106 0.92542 0.95169 0.92755 0.92808 0.85488 0.91320 0.91231 0.94030 0.93266 0.89918 0.91358 0.90527 0.89751 0.92852 0.94612 0.91021 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.86 71.98 0.71 -3.83 16 2 C -0.12 -4.95 5.10 30.59 0.16 -4.80 16 3 C 0.19 8.89 1.34 44.17 0.06 8.95 16 4 H 0.02 1.07 5.94 -2.39 -0.01 1.06 16 5 C -0.54 -30.47 8.93 25.60 0.23 -30.25 16 6 H 0.04 2.35 7.96 -2.91 -0.02 2.33 16 7 C 0.01 0.79 5.45 84.65 0.46 1.25 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.95 46.06 24.42 68.60 1.67 47.73 16 10 H -0.27 -12.35 6.82 99.48 0.68 -11.67 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 12 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 13 N -0.66 -25.80 5.46 -473.32 -2.59 -28.38 16 14 C 0.09 3.19 2.26 44.91 0.10 3.29 16 15 H 0.01 0.60 7.74 -2.39 -0.02 0.58 16 16 C -0.13 -3.83 8.91 71.98 0.64 -3.19 16 17 C 0.10 2.99 2.24 44.94 0.10 3.09 16 18 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 19 C -0.11 -2.81 5.03 30.65 0.15 -2.66 16 20 C -0.11 -2.33 6.00 30.67 0.18 -2.14 16 21 C -0.12 -2.54 6.09 30.64 0.19 -2.35 16 22 C 0.06 1.46 6.55 86.32 0.57 2.03 16 23 N -0.71 -22.56 6.50 -491.70 -3.19 -25.75 16 24 H 0.07 2.30 7.65 -2.39 -0.02 2.29 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.03 1.36 3.22 -2.39 -0.01 1.35 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.33 13.08 5.89 -89.69 -0.53 12.55 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.76 6.79 -2.39 -0.02 1.74 16 33 H 0.04 1.35 7.17 -2.39 -0.02 1.33 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.80 6.64 -2.39 -0.02 1.78 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.34 11.52 6.59 -89.69 -0.59 10.93 16 Total: -1.00 -64.34 310.18 -0.48 -64.82 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.22 Total: 32.03 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.55 Total: -30.60 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.48 Total: -113.99 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -64.34 -0.48 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.689 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds