Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47225 * 2 1 4 4 H 1.08998 * 109.46847 * 177.88075 * 3 2 1 5 5 C 1.50698 * 109.47233 * 57.87601 * 3 2 1 6 6 H 1.08003 * 119.99882 * 239.99993 * 5 3 2 7 7 C 1.37876 * 119.99927 * 60.00194 * 5 3 2 8 8 N 1.31513 * 120.00040 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47064 * 90.00372 * 9 7 5 11 11 H 1.48506 * 109.47001 * 210.00394 * 9 7 5 12 12 H 1.48504 * 109.47173 * 330.00144 * 9 7 5 13 13 N 1.46907 * 109.46418 * 297.87771 * 3 2 1 14 14 C 1.46900 * 110.99795 * 272.68971 * 13 3 2 15 15 H 1.09001 * 109.47073 * 35.90251 * 14 13 3 16 16 C 1.52999 * 109.47560 * 275.89410 * 14 13 3 17 17 C 1.53001 * 109.46659 * 155.89599 * 14 13 3 18 18 H 1.08997 * 109.46497 * 59.97701 * 17 14 13 19 19 C 1.53038 * 109.46546 * 300.00012 * 17 14 13 20 20 C 1.53116 * 109.28089 * 180.80504 * 19 17 14 21 21 C 1.53116 * 109.15965 * 57.65708 * 20 19 17 22 22 C 1.53039 * 109.27701 * 302.34353 * 21 20 19 23 23 N 1.46845 * 109.52267 * 59.18442 * 22 21 20 24 24 H 1.08997 * 109.47267 * 182.88121 * 1 2 3 25 25 H 1.09000 * 109.47334 * 302.87902 * 1 2 3 26 26 H 1.08999 * 109.46778 * 62.87900 * 1 2 3 27 27 H 1.08994 * 109.47314 * 239.99527 * 2 1 3 28 28 H 1.09002 * 109.47226 * 119.99619 * 2 1 3 29 29 H 0.97000 * 119.99846 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99248 * 148.74450 * 13 3 2 31 31 H 1.08996 * 109.46947 * 300.00279 * 16 14 13 32 32 H 1.08997 * 109.46738 * 60.00284 * 16 14 13 33 33 H 1.08994 * 109.47086 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.50127 * 300.75383 * 19 17 14 35 35 H 1.09006 * 109.49956 * 60.86356 * 19 17 14 36 36 H 1.09001 * 109.52081 * 177.56065 * 20 19 17 37 37 H 1.08994 * 109.52263 * 297.75123 * 20 19 17 38 38 H 1.09000 * 109.50742 * 62.28572 * 21 20 19 39 39 H 1.09005 * 109.50478 * 182.36663 * 21 20 19 40 40 H 1.09001 * 109.45826 * 179.19253 * 22 21 20 41 41 H 1.09000 * 109.46394 * 299.17388 * 22 21 20 42 42 H 1.00897 * 111.00258 * 174.16537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0380 5 6 1.4952 2.1680 1.2033 6 1 0.8783 3.0447 1.0717 7 6 1.7843 1.7126 2.4721 8 7 2.5359 0.6453 2.6323 9 14 1.1095 2.6122 3.9636 10 1 -0.2122 2.0425 4.3292 11 1 2.0487 2.4551 5.1032 12 1 0.9558 4.0543 3.6442 13 7 1.5926 2.1200 -1.2244 14 6 2.5443 1.9052 -2.3226 15 1 2.9570 0.8986 -2.2541 16 6 3.6770 2.9288 -2.2236 17 6 1.8232 2.0705 -3.6619 18 1 1.4100 3.0768 -3.7301 19 6 0.6902 1.0465 -3.7608 20 6 -0.0156 1.2022 -5.1107 21 6 1.0070 1.0231 -6.2361 22 6 2.1308 2.0479 -6.0654 23 7 2.7749 1.8569 -4.7597 24 1 -0.3634 -1.0263 0.0517 25 1 -0.3634 0.5579 0.8630 26 1 -0.3633 0.4685 -0.9147 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.7395 0.3251 3.5250 30 1 1.4466 3.1047 -1.0599 31 1 3.2642 3.9353 -2.2922 32 1 4.1907 2.8111 -1.2695 33 1 4.3829 2.7697 -3.0387 34 1 1.1010 0.0402 -3.6789 35 1 -0.0242 1.2152 -2.9550 36 1 -0.7954 0.4463 -5.2033 37 1 -0.4599 2.1953 -5.1769 38 1 1.4229 0.0165 -6.1932 39 1 0.5189 1.1745 -7.1989 40 1 2.8680 1.9135 -6.8570 41 1 1.7163 3.0544 -6.1221 42 1 3.5798 2.4574 -4.6622 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386114122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -21.485047 kcal Electronic energy + Delta-G solvation = -18549.797716 eV Core-core repulsion = 15949.477890 eV Total energy + Delta-G solvation = -2600.319825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.86238 -36.33290 -33.63807 -31.90960 -31.08874 -29.88602 -28.04376 -25.82884 -23.93213 -23.05026 -22.75923 -20.33439 -19.43068 -18.77103 -16.68785 -15.98058 -15.13247 -14.54434 -14.28465 -13.88377 -13.57686 -13.30814 -13.24407 -12.89729 -12.77366 -12.59045 -12.02846 -11.82856 -11.75174 -11.24100 -11.11983 -10.92961 -10.68591 -10.55806 -10.46484 -10.25855 -10.18216 -10.02588 -9.88940 -9.53761 -9.28136 -8.73025 -8.44054 -8.22181 -7.14610 -5.99103 -4.04068 3.30510 3.37445 3.39741 4.30948 4.44359 4.98282 5.04615 5.13382 5.31444 5.37091 5.42728 5.60777 5.62846 5.71688 5.80537 5.92755 5.94958 6.03058 6.13740 6.23656 6.25298 6.39580 6.54331 6.57836 6.62437 6.67609 6.73961 6.88325 6.94737 7.30393 7.34735 7.41790 7.55915 7.58842 7.80284 7.83817 7.91489 8.30907 8.45342 8.73262 9.06429 9.60479 11.06793 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.005988 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.045437 B = 4674.816838 C = 4969.582641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.078 0.922 16 C -0.181 4.181 17 C 0.104 3.896 18 H 0.029 0.971 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.061 3.939 23 N -0.689 5.689 24 H 0.011 0.989 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.010 0.990 28 H 0.083 0.917 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 2.195 -13.688 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.021 4.021 15 H 0.096 0.904 16 C -0.240 4.240 17 C -0.006 4.006 18 H 0.047 0.953 19 C -0.137 4.137 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.068 4.068 23 N -0.322 5.322 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.566 0.879 -13.721 13.838 hybrid contribution 0.389 2.010 1.120 2.334 sum -1.177 2.889 -12.600 12.981 Atomic orbital electron populations 1.21462 0.97629 0.97220 1.01318 1.21412 0.94970 0.98311 0.99218 1.19096 0.93351 0.91452 0.84970 0.98084 1.21199 1.31487 1.11870 0.90476 0.92469 1.24870 0.95117 0.95021 0.98786 1.69893 1.37396 1.23169 1.22237 0.86614 0.78799 0.80067 0.82597 1.20686 1.21393 1.20074 1.60674 1.45845 1.16577 1.07698 1.21473 0.90690 0.98885 0.91030 0.90410 1.22529 1.00022 0.99531 1.01926 1.21422 0.92251 0.96903 0.90025 0.95269 1.21489 0.96989 0.99145 0.96126 1.21633 0.97638 1.00999 0.95830 1.21585 0.95999 0.99939 0.97936 1.21843 0.96500 0.96879 0.91602 1.60336 1.09915 1.60336 1.01633 0.96972 0.92637 0.93871 0.97087 0.89885 0.93032 0.85433 0.93466 0.92027 0.93148 0.91917 0.89740 0.92309 0.92836 0.91368 0.92420 0.91475 0.95846 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.52 37.16 0.35 -2.31 16 2 C -0.10 -2.42 5.57 -26.73 -0.15 -2.57 16 3 C 0.22 5.29 2.10 -68.86 -0.14 5.15 16 4 H 0.00 0.04 7.05 -51.93 -0.37 -0.33 16 5 C -0.51 -13.48 7.17 -34.44 -0.25 -13.72 16 6 H 0.06 1.50 7.58 -52.48 -0.40 1.10 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.62 4.69 -100.95 -0.47 -14.10 16 14 C 0.09 1.59 2.17 -67.71 -0.15 1.44 16 15 H 0.08 1.54 7.28 -51.93 -0.38 1.16 16 16 C -0.18 -2.90 8.82 37.16 0.33 -2.57 16 17 C 0.10 1.58 2.27 -67.72 -0.15 1.42 16 18 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 19 C -0.10 -1.53 5.20 -26.65 -0.14 -1.67 16 20 C -0.12 -1.57 6.00 -26.61 -0.16 -1.73 16 21 C -0.12 -1.34 6.09 -26.65 -0.16 -1.51 16 22 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 23 N -0.69 -9.31 6.49 -106.76 -0.69 -10.00 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 1.34 7.05 -51.93 -0.37 0.98 16 26 H 0.04 0.91 6.99 -51.93 -0.36 0.54 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 28 H 0.08 2.24 6.13 -51.93 -0.32 1.92 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.33 6.63 7.93 -39.29 -0.31 6.32 16 31 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.06 1.12 7.39 -51.93 -0.38 0.73 16 33 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.44 6.88 -51.93 -0.36 1.08 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.34 4.22 6.77 -39.29 -0.27 3.96 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -26.65 315.01 -9.15 -35.80 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.60 Total: 7.63 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.74 Total: -15.75 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.54 Total: -48.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.65 -9.15 -35.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386114122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.315 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds