Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 H 1.09001 * 109.46979 * 296.89569 * 3 2 1 5 5 C 1.53004 * 109.46911 * 176.90336 * 3 2 1 6 6 N 1.46901 * 109.46986 * 172.68838 * 5 3 2 7 7 C 1.46901 * 110.99756 * 175.36504 * 6 5 3 8 8 C 1.53006 * 109.46948 * 185.41890 * 7 6 5 9 9 C 1.50702 * 115.54658 * 305.76417 * 8 7 6 10 10 H 1.07999 * 120.00196 * 89.73853 * 9 8 7 11 11 C 1.37881 * 119.99833 * 269.73928 * 9 8 7 12 12 N 1.31511 * 119.99801 * 181.55352 * 11 9 8 13 13 Si 1.86798 * 119.99998 * 1.55736 * 11 9 8 14 14 H 1.48504 * 109.47144 * 265.39590 * 13 11 9 15 15 H 1.48501 * 109.47251 * 25.39270 * 13 11 9 16 16 H 1.48497 * 109.47217 * 145.39662 * 13 11 9 17 17 C 1.52996 * 117.50307 * 91.43204 * 8 7 6 18 18 C 1.52993 * 117.49892 * 160.09139 * 8 7 6 19 19 N 1.46900 * 109.47075 * 56.90189 * 3 2 1 20 20 C 1.46896 * 111.00035 * 72.98904 * 19 3 2 21 21 C 1.46902 * 110.99704 * 196.94359 * 19 3 2 22 22 H 1.09009 * 109.47047 * 294.82866 * 1 2 3 23 23 H 1.09001 * 109.47562 * 54.82402 * 1 2 3 24 24 H 1.09003 * 109.47675 * 174.83254 * 1 2 3 25 25 H 1.09003 * 109.46710 * 239.99810 * 2 1 3 26 26 H 1.08997 * 109.47350 * 120.00459 * 2 1 3 27 27 H 1.08996 * 109.47191 * 52.68736 * 5 3 2 28 28 H 1.09005 * 109.46763 * 292.68664 * 5 3 2 29 29 H 1.00894 * 111.00138 * 299.32222 * 6 5 3 30 30 H 1.08996 * 109.47288 * 65.41634 * 7 6 5 31 31 H 1.09000 * 109.47240 * 305.41061 * 7 6 5 32 32 H 0.97009 * 119.99719 * 180.02562 * 12 11 9 33 33 H 1.08997 * 117.50274 * 215.00695 * 17 8 7 34 34 H 1.09009 * 117.49615 * 0.02562 * 17 8 7 35 35 H 1.08999 * 117.49821 * 359.97438 * 18 8 7 36 36 H 1.09005 * 117.49556 * 144.96923 * 18 8 7 37 37 H 1.08998 * 109.47713 * 65.80228 * 20 19 3 38 38 H 1.08999 * 109.46962 * 185.80766 * 20 19 3 39 39 H 1.09000 * 109.47179 * 305.79981 * 20 19 3 40 40 H 1.08998 * 109.47755 * 49.94937 * 21 19 3 41 41 H 1.08994 * 109.47019 * 169.95388 * 21 19 3 42 42 H 1.09004 * 109.47082 * 289.94880 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7228 1.9400 -0.9165 5 6 3.5680 1.4431 0.0779 6 7 4.0667 2.8136 -0.0979 7 6 5.5238 2.8705 0.0803 8 6 5.9879 4.3274 0.0243 9 6 5.5711 5.0956 -1.2034 10 1 4.6349 5.6340 -1.2115 11 6 6.3849 5.1109 -2.3163 12 7 6.0357 5.8061 -3.3766 13 14 7.9833 4.1442 -2.3179 14 1 9.1011 5.0352 -1.9155 15 1 7.8801 3.0154 -1.3586 16 1 8.2394 3.6136 -3.6810 17 6 6.0660 5.0953 1.3453 18 6 7.3504 4.6588 0.6363 19 7 1.4902 2.1562 1.1603 20 6 2.1339 1.7135 2.4042 21 6 1.6149 3.6102 0.9914 22 1 -0.3634 0.4316 0.9328 23 1 -0.3634 0.5920 -0.8400 24 1 -0.3634 -1.0235 -0.0926 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9722 0.8057 -0.7085 28 1 3.8823 1.0640 1.0504 29 1 3.7976 3.1838 -0.9971 30 1 6.0094 2.3037 -0.7140 31 1 5.7886 2.4418 1.0468 32 1 6.6082 5.8166 -4.1598 33 1 5.8159 6.1560 1.3265 34 1 5.7871 4.5624 2.2545 35 1 7.9160 3.8390 1.0792 36 1 7.9455 5.4322 0.1506 37 1 3.1850 2.0018 2.3920 38 1 1.6389 2.1806 3.2556 39 1 2.0554 0.6296 2.4881 40 1 1.2267 3.8972 0.0142 41 1 1.0463 4.1166 1.7713 42 1 2.6645 3.8956 1.0635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388862905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = 12.815205 kcal Electronic energy + Delta-G solvation = -18445.168710 eV Core-core repulsion = 15846.336255 eV Total energy + Delta-G solvation = -2598.832455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95146 -38.70339 -35.13734 -34.19318 -33.78811 -29.58037 -28.35511 -27.77739 -26.12100 -24.21615 -23.36813 -23.00008 -21.01958 -20.30475 -18.16112 -17.38496 -16.84461 -16.39490 -16.07070 -15.64967 -15.34177 -15.12238 -14.75667 -14.38602 -14.05959 -13.94791 -13.40589 -13.35698 -13.05112 -12.84814 -12.71054 -12.56881 -12.34702 -12.23693 -12.15650 -12.02087 -11.85002 -11.58858 -11.44804 -11.34011 -10.88493 -10.62443 -10.24126 -9.42619 -8.68124 -8.27314 -6.31968 1.32314 1.36506 1.48232 2.36427 3.04469 3.08581 3.27179 3.55777 3.94939 4.15218 4.27758 4.31433 4.41945 4.44777 4.47393 4.59190 4.63974 4.73306 4.73950 4.80647 4.84243 4.85148 4.87009 5.01392 5.04392 5.11658 5.15212 5.21751 5.22578 5.36473 5.41596 5.50569 5.53355 5.60864 5.76606 6.25556 6.29608 6.32861 6.41181 6.54976 6.78820 7.36869 8.87925 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.006685 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.207918 B = 4187.729552 C = 4451.136515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C 0.088 3.912 4 H 0.062 0.938 5 C 0.025 3.975 6 N -0.671 5.671 7 C 0.108 3.892 8 C -0.013 4.013 9 C -0.470 4.470 10 H 0.036 0.964 11 C 0.020 3.980 12 N -0.949 5.949 13 Si 0.936 3.064 14 H -0.277 1.277 15 H -0.235 1.235 16 H -0.303 1.303 17 C -0.156 4.156 18 C -0.203 4.203 19 N -0.526 5.526 20 C 0.024 3.976 21 C 0.022 3.978 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.339 0.661 30 H 0.008 0.992 31 H 0.065 0.935 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -12.248 10.026 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C -0.022 4.022 4 H 0.080 0.920 5 C -0.106 4.106 6 N -0.302 5.302 7 C -0.021 4.021 8 C -0.014 4.014 9 C -0.508 4.508 10 H 0.054 0.946 11 C -0.177 4.177 12 N -0.589 5.589 13 Si 0.762 3.238 14 H -0.203 1.203 15 H -0.158 1.158 16 H -0.230 1.230 17 C -0.193 4.193 18 C -0.241 4.241 19 N -0.249 5.249 20 C -0.124 4.124 21 C -0.127 4.127 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.026 0.974 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.463 -12.130 10.546 17.324 hybrid contribution 2.017 0.105 -1.598 2.576 sum -4.445 -12.025 8.948 15.634 Atomic orbital electron populations 1.21530 0.94628 1.00850 1.01973 1.21474 0.97166 0.93824 1.02058 1.21783 0.90556 0.95852 0.93964 0.91952 1.22803 0.96941 0.89747 1.01081 1.60516 1.11550 1.19610 1.38477 1.21428 0.87943 0.94597 0.98165 1.19307 0.95987 0.93285 0.92852 1.20374 1.05077 1.29024 0.96304 0.94563 1.25760 1.01125 0.95809 0.94977 1.70048 1.39942 1.43331 1.05574 0.85940 0.80315 0.80779 0.76737 1.20321 1.15813 1.23040 1.22737 1.00609 0.99796 0.96201 1.22995 0.91577 1.03285 1.06198 1.62359 1.55120 1.05222 1.02208 1.22395 0.97079 1.01013 0.91932 1.22456 1.02111 0.87861 1.00264 0.92269 0.93955 0.92393 0.91604 0.91342 0.95922 0.90159 0.84258 0.97420 0.91706 0.92848 0.91079 0.88433 0.88472 0.91255 0.95605 0.91607 0.90839 0.93714 0.92482 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.63 71.98 0.69 -1.91 16 2 C -0.11 -2.22 5.35 30.59 0.16 -2.06 16 3 C 0.09 2.29 2.15 44.92 0.10 2.38 16 4 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 5 C 0.02 0.71 4.54 86.30 0.39 1.10 16 6 N -0.67 -23.84 3.65 -513.87 -1.88 -25.72 16 7 C 0.11 4.14 5.43 86.31 0.47 4.61 16 8 C -0.01 -0.58 1.09 -52.93 -0.06 -0.64 16 9 C -0.47 -25.60 8.54 25.60 0.22 -25.38 16 10 H 0.04 2.24 8.06 -2.91 -0.02 2.21 16 11 C 0.02 1.15 5.47 84.66 0.46 1.62 16 12 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 13 Si 0.94 44.18 24.84 68.60 1.70 45.89 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.24 -10.10 5.61 99.48 0.56 -9.55 16 16 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 17 C -0.16 -6.09 9.92 30.61 0.30 -5.79 16 18 C -0.20 -8.14 7.38 30.61 0.23 -7.91 16 19 N -0.53 -13.74 4.12 -923.29 -3.80 -17.54 16 20 C 0.02 0.55 8.48 127.69 1.08 1.63 16 21 C 0.02 0.64 9.03 127.69 1.15 1.80 16 22 H 0.06 1.24 7.70 -2.38 -0.02 1.22 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.30 6.82 -2.39 -0.02 1.28 16 27 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 2.15 5.93 -2.38 -0.01 2.13 16 29 H 0.34 13.91 8.03 -89.70 -0.72 13.19 16 30 H 0.01 0.31 6.86 -2.39 -0.02 0.30 16 31 H 0.06 2.21 8.03 -2.39 -0.02 2.19 16 32 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.07 3.00 6.93 -2.38 -0.02 2.99 16 37 H 0.03 0.66 6.42 -2.39 -0.02 0.65 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.45 6.62 -2.39 -0.02 1.44 16 40 H 0.04 1.40 7.85 -2.39 -0.02 1.39 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.97 5.96 -2.39 -0.01 1.95 16 Total: -1.00 -59.62 318.00 1.63 -57.99 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.10 Total: 27.99 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.20 Total: -30.54 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -5.38 Total: -101.33 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.70 Total: 45.89 kcal Total: -59.62 1.63 -57.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388862905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.810 kcal (2) G-P(sol) polarization free energy of solvation -59.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds