Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 H 1.09001 * 109.47411 * 54.99687 * 3 2 1 5 5 C 1.52998 * 109.47118 * 175.00042 * 3 2 1 6 6 N 1.46901 * 109.47184 * 295.96280 * 5 3 2 7 7 C 1.46897 * 111.00380 * 174.82849 * 6 5 3 8 8 C 1.52996 * 109.47469 * 185.47334 * 7 6 5 9 9 C 1.50700 * 115.55097 * 306.05324 * 8 7 6 10 10 H 1.07995 * 120.00297 * 145.10991 * 9 8 7 11 11 C 1.37883 * 119.99764 * 325.11622 * 9 8 7 12 12 N 1.31516 * 119.99919 * 359.14023 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 179.13957 * 11 9 8 14 14 H 1.48500 * 109.46855 * 89.99712 * 13 11 9 15 15 H 1.48499 * 109.46799 * 210.00216 * 13 11 9 16 16 H 1.48495 * 109.46948 * 329.99963 * 13 11 9 17 17 C 1.52995 * 117.49879 * 160.38291 * 8 7 6 18 18 C 1.53003 * 117.49843 * 91.71961 * 8 7 6 19 19 N 1.46902 * 109.47204 * 294.99993 * 3 2 1 20 20 C 1.46897 * 111.00292 * 168.97975 * 19 3 2 21 21 C 1.46905 * 110.99601 * 292.93158 * 19 3 2 22 22 H 1.09001 * 109.47009 * 60.00085 * 1 2 3 23 23 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46740 * 300.00541 * 1 2 3 25 25 H 1.08996 * 109.46631 * 239.99575 * 2 1 3 26 26 H 1.09001 * 109.47009 * 119.99915 * 2 1 3 27 27 H 1.09001 * 109.47358 * 55.96126 * 5 3 2 28 28 H 1.08997 * 109.47155 * 175.96405 * 5 3 2 29 29 H 1.00897 * 111.00219 * 298.78457 * 6 5 3 30 30 H 1.09005 * 109.46998 * 305.47496 * 7 6 5 31 31 H 1.08999 * 109.47277 * 65.47002 * 7 6 5 32 32 H 0.97000 * 119.99697 * 185.01678 * 12 11 9 33 33 H 1.09004 * 117.50279 * 359.97438 * 17 8 7 34 34 H 1.09004 * 117.49839 * 145.02402 * 17 8 7 35 35 H 1.08996 * 117.49712 * 214.97703 * 18 8 7 36 36 H 1.09005 * 117.49882 * 359.97438 * 18 8 7 37 37 H 1.09001 * 109.46993 * 181.11812 * 20 19 3 38 38 H 1.08994 * 109.47402 * 61.10950 * 20 19 3 39 39 H 1.09000 * 109.46606 * 301.11399 * 20 19 3 40 40 H 1.08994 * 109.47202 * 296.04122 * 21 19 3 41 41 H 1.08997 * 109.47541 * 56.04921 * 21 19 3 42 42 H 1.09001 * 109.46803 * 176.04459 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 7 3.9499 0.8749 1.4240 7 6 5.4093 0.7470 1.5309 8 6 5.7643 0.0279 2.8339 9 6 5.1840 0.6302 4.0876 10 1 4.8809 -0.0091 4.9035 11 6 5.0400 1.9974 4.1928 12 7 5.4246 2.7770 3.2059 13 14 4.2985 2.7423 5.7371 14 1 5.3781 3.0303 6.7152 15 1 3.5955 4.0035 5.3899 16 1 3.3324 1.7852 6.3336 17 6 7.1512 -0.6104 2.9333 18 6 5.9103 -1.4943 2.7835 19 7 1.6515 2.0992 -1.2552 20 6 1.8901 3.5471 -1.1877 21 6 2.3526 1.5031 -2.4003 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.9963 0.8449 -0.6761 28 1 3.9342 2.4672 0.0537 29 1 3.5784 1.4245 2.1843 30 1 5.7867 0.1729 0.6846 31 1 5.8621 1.7385 1.5282 32 1 5.3911 3.7410 3.3081 33 1 7.8106 -0.5185 2.0703 34 1 7.6437 -0.5952 3.9056 35 1 5.5871 -2.0600 3.6573 36 1 5.7531 -1.9835 1.8222 37 1 1.5753 4.0112 -2.1224 38 1 2.9522 3.7334 -1.0290 39 1 1.3195 3.9711 -0.3613 40 1 3.4240 1.6765 -2.3006 41 1 2.1590 0.4308 -2.4267 42 1 1.9949 1.9597 -3.3231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388862907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = 25.759037 kcal Electronic energy + Delta-G solvation = -18427.580682 eV Core-core repulsion = 15829.309515 eV Total energy + Delta-G solvation = -2598.271168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.53524 -36.77205 -33.66499 -32.40835 -32.03291 -27.83217 -27.44795 -25.62894 -24.53120 -22.72850 -22.10054 -21.03972 -19.31133 -18.79857 -16.21942 -15.73870 -15.18311 -14.71709 -14.57628 -14.09493 -13.84595 -13.37239 -13.14106 -12.99875 -12.58455 -12.36919 -11.97921 -11.62915 -11.57387 -11.36999 -11.11511 -11.01229 -10.95527 -10.71691 -10.62172 -10.42084 -10.30709 -10.16179 -10.00405 -9.32932 -8.97823 -8.73502 -8.14209 -7.98920 -7.12379 -5.96564 -4.12360 3.24091 3.32016 3.36239 4.22799 4.33478 4.95861 5.14605 5.23509 5.41993 5.52784 5.58009 5.64462 5.66931 5.78742 5.81629 5.89066 6.01129 6.05125 6.13711 6.18184 6.24314 6.36318 6.46141 6.48935 6.49889 6.66881 6.74754 6.80857 6.82168 6.87121 6.99454 7.26421 7.30753 7.34030 7.39319 7.61320 7.98262 8.33820 8.45328 8.69383 8.91670 9.47876 10.92481 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.007574 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.651253 B = 3695.730763 C = 4177.971097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.086 3.914 4 H 0.077 0.923 5 C 0.033 3.967 6 N -0.666 5.666 7 C 0.106 3.894 8 C 0.058 3.942 9 C -0.469 4.469 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.211 4.211 18 C -0.204 4.204 19 N -0.537 5.537 20 C 0.021 3.979 21 C 0.019 3.981 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.018 0.982 29 H 0.353 0.647 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -0.505 -8.250 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.022 4.022 4 H 0.095 0.905 5 C -0.099 4.099 6 N -0.299 5.299 7 C -0.023 4.023 8 C 0.057 3.943 9 C -0.507 4.507 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.249 4.249 18 C -0.241 4.241 19 N -0.260 5.260 20 C -0.127 4.127 21 C -0.129 4.129 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.173 0.827 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.686 -1.015 -8.591 10.933 hybrid contribution 1.038 1.512 1.043 2.110 sum -5.649 0.497 -7.548 9.440 Atomic orbital electron populations 1.21681 0.96396 1.00184 1.01719 1.21467 0.95100 0.95108 1.02635 1.21755 0.93765 0.95774 0.90918 0.90514 1.22450 0.95526 0.96950 0.94926 1.60475 1.12805 1.54409 1.02204 1.21452 0.87247 1.00349 0.93208 1.18956 0.92421 0.88071 0.94805 1.20630 1.39129 0.91348 0.99562 0.92297 1.24999 0.95168 0.97160 0.96309 1.69887 1.48586 1.03966 1.30514 0.86563 0.79436 0.78692 0.83301 1.20744 1.21189 1.19684 1.22973 0.92565 1.09482 0.99912 1.22819 1.04456 0.97068 0.99756 1.62349 1.56862 1.03252 1.03537 1.22377 0.99795 0.88711 1.01846 1.22416 0.96540 1.00547 0.93445 0.92373 0.93954 0.93442 0.92850 0.89790 0.92540 0.96387 0.82682 0.96512 0.90481 0.93055 0.91973 0.90678 0.91059 0.91521 0.92021 0.95203 0.91649 0.95293 0.91183 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.80 37.16 0.36 -1.57 16 2 C -0.11 -1.61 5.28 -26.73 -0.14 -1.75 16 3 C 0.09 1.39 1.96 -67.71 -0.13 1.26 16 4 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 5 C 0.03 0.62 4.24 -3.82 -0.02 0.60 16 6 N -0.67 -14.48 5.71 -113.78 -0.65 -15.13 16 7 C 0.11 2.52 4.76 -3.83 -0.02 2.50 16 8 C 0.06 1.44 2.15 -155.66 -0.34 1.10 16 9 C -0.47 -12.45 8.50 -34.44 -0.29 -12.74 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.67 4.48 -17.82 -0.08 1.59 16 12 N -0.89 -23.46 9.91 55.43 0.55 -22.91 16 13 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.21 -4.85 9.96 -26.69 -0.27 -5.12 16 18 C -0.20 -4.57 9.92 -26.69 -0.26 -4.84 16 19 N -0.54 -7.65 4.41 -243.18 -1.07 -8.72 16 20 C 0.02 0.28 9.36 60.06 0.56 0.85 16 21 C 0.02 0.24 8.70 60.07 0.52 0.77 16 22 H 0.06 0.78 7.75 -51.93 -0.40 0.37 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.79 6.30 -51.93 -0.33 0.46 16 26 H 0.08 1.45 7.59 -51.93 -0.39 1.06 16 27 H 0.06 1.03 6.60 -51.93 -0.34 0.69 16 28 H 0.02 0.36 6.60 -51.93 -0.34 0.02 16 29 H 0.35 8.42 6.75 -39.29 -0.27 8.16 16 30 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 31 H 0.08 2.02 5.94 -51.93 -0.31 1.71 16 32 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.43 6.63 -51.93 -0.34 0.09 16 39 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.03 0.39 6.54 -51.93 -0.34 0.05 16 41 H 0.07 0.88 6.25 -51.93 -0.32 0.55 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -25.68 322.40 -9.01 -34.69 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.57 Total: 9.13 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.10 Total: -17.35 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -1.17 Total: -46.76 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.68 -9.01 -34.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388862907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.450 kcal (2) G-P(sol) polarization free energy of solvation -25.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds