Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 H 1.09001 * 109.47411 * 54.99687 * 3 2 1 5 5 C 1.52998 * 109.47118 * 175.00042 * 3 2 1 6 6 N 1.46901 * 109.47184 * 295.96280 * 5 3 2 7 7 C 1.46897 * 111.00380 * 174.82849 * 6 5 3 8 8 C 1.52996 * 109.47469 * 185.47334 * 7 6 5 9 9 C 1.50700 * 115.55097 * 306.05324 * 8 7 6 10 10 H 1.07995 * 120.00297 * 145.10991 * 9 8 7 11 11 C 1.37883 * 119.99764 * 325.11622 * 9 8 7 12 12 N 1.31516 * 119.99919 * 359.14023 * 11 9 8 13 13 Si 1.86801 * 119.99845 * 179.13957 * 11 9 8 14 14 H 1.48500 * 109.46855 * 89.99712 * 13 11 9 15 15 H 1.48499 * 109.46799 * 210.00216 * 13 11 9 16 16 H 1.48495 * 109.46948 * 329.99963 * 13 11 9 17 17 C 1.52995 * 117.49879 * 160.38291 * 8 7 6 18 18 C 1.53003 * 117.49843 * 91.71961 * 8 7 6 19 19 N 1.46902 * 109.47204 * 294.99993 * 3 2 1 20 20 C 1.46897 * 111.00292 * 168.97975 * 19 3 2 21 21 C 1.46905 * 110.99601 * 292.93158 * 19 3 2 22 22 H 1.09001 * 109.47009 * 60.00085 * 1 2 3 23 23 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46740 * 300.00541 * 1 2 3 25 25 H 1.08996 * 109.46631 * 239.99575 * 2 1 3 26 26 H 1.09001 * 109.47009 * 119.99915 * 2 1 3 27 27 H 1.09001 * 109.47358 * 55.96126 * 5 3 2 28 28 H 1.08997 * 109.47155 * 175.96405 * 5 3 2 29 29 H 1.00897 * 111.00219 * 298.78457 * 6 5 3 30 30 H 1.09005 * 109.46998 * 305.47496 * 7 6 5 31 31 H 1.08999 * 109.47277 * 65.47002 * 7 6 5 32 32 H 0.97000 * 119.99697 * 185.01678 * 12 11 9 33 33 H 1.09004 * 117.50279 * 359.97438 * 17 8 7 34 34 H 1.09004 * 117.49839 * 145.02402 * 17 8 7 35 35 H 1.08996 * 117.49712 * 214.97703 * 18 8 7 36 36 H 1.09005 * 117.49882 * 359.97438 * 18 8 7 37 37 H 1.09001 * 109.46993 * 181.11812 * 20 19 3 38 38 H 1.08994 * 109.47402 * 61.10950 * 20 19 3 39 39 H 1.09000 * 109.46606 * 301.11399 * 20 19 3 40 40 H 1.08994 * 109.47202 * 296.04122 * 21 19 3 41 41 H 1.08997 * 109.47541 * 56.04921 * 21 19 3 42 42 H 1.09001 * 109.46803 * 176.04459 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 7 3.9499 0.8749 1.4240 7 6 5.4093 0.7470 1.5309 8 6 5.7643 0.0279 2.8339 9 6 5.1840 0.6302 4.0876 10 1 4.8809 -0.0091 4.9035 11 6 5.0400 1.9974 4.1928 12 7 5.4246 2.7770 3.2059 13 14 4.2985 2.7423 5.7371 14 1 5.3781 3.0303 6.7152 15 1 3.5955 4.0035 5.3899 16 1 3.3324 1.7852 6.3336 17 6 7.1512 -0.6104 2.9333 18 6 5.9103 -1.4943 2.7835 19 7 1.6515 2.0992 -1.2552 20 6 1.8901 3.5471 -1.1877 21 6 2.3526 1.5031 -2.4003 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.9963 0.8449 -0.6761 28 1 3.9342 2.4672 0.0537 29 1 3.5784 1.4245 2.1843 30 1 5.7867 0.1729 0.6846 31 1 5.8621 1.7385 1.5282 32 1 5.3911 3.7410 3.3081 33 1 7.8106 -0.5185 2.0703 34 1 7.6437 -0.5952 3.9056 35 1 5.5871 -2.0600 3.6573 36 1 5.7531 -1.9835 1.8222 37 1 1.5753 4.0112 -2.1224 38 1 2.9522 3.7334 -1.0290 39 1 1.3195 3.9711 -0.3613 40 1 3.4240 1.6765 -2.3006 41 1 2.1590 0.4308 -2.4267 42 1 1.9949 1.9597 -3.3231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388862907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = 10.960658 kcal Electronic energy + Delta-G solvation = -18428.222388 eV Core-core repulsion = 15829.309515 eV Total energy + Delta-G solvation = -2598.912874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85665 -38.56510 -35.24392 -34.14598 -33.53097 -29.29545 -28.51268 -27.58478 -26.05417 -24.11154 -23.48659 -22.85849 -20.99023 -20.33500 -18.11178 -17.04719 -16.86855 -16.34277 -15.93641 -15.56403 -15.54101 -14.83727 -14.68680 -14.21268 -14.09813 -13.92594 -13.40124 -13.05150 -13.00575 -12.81636 -12.66443 -12.59368 -12.55290 -12.23881 -12.20463 -12.01572 -11.93473 -11.51728 -11.36785 -11.21016 -10.93609 -10.60532 -10.04724 -9.24519 -8.89086 -7.93582 -6.16911 1.40554 1.44582 1.53103 2.41833 2.99220 3.07538 3.58109 3.83442 3.85722 4.28598 4.30657 4.34980 4.37086 4.46432 4.56746 4.62854 4.66342 4.70078 4.79090 4.85750 4.92058 4.96404 4.99493 5.00957 5.03660 5.07619 5.16102 5.22642 5.31895 5.39595 5.45214 5.56134 5.61370 5.63734 5.99398 6.09462 6.16992 6.44617 6.58093 6.77364 6.96167 7.45071 8.91827 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.007574 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.651253 B = 3695.730763 C = 4177.971097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C 0.095 3.905 4 H 0.061 0.939 5 C 0.042 3.958 6 N -0.664 5.664 7 C 0.118 3.882 8 C 0.027 3.973 9 C -0.489 4.489 10 H 0.047 0.953 11 C 0.031 3.969 12 N -0.904 5.904 13 Si 0.947 3.053 14 H -0.281 1.281 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.208 4.208 18 C -0.187 4.187 19 N -0.534 5.534 20 C 0.022 3.978 21 C 0.018 3.982 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.001 0.999 29 H 0.339 0.661 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.258 0.742 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.013 0.987 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 -0.805 -9.099 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C -0.014 4.014 4 H 0.079 0.921 5 C -0.090 4.090 6 N -0.295 5.295 7 C -0.012 4.012 8 C 0.026 3.974 9 C -0.527 4.527 10 H 0.066 0.934 11 C -0.168 4.168 12 N -0.543 5.543 13 Si 0.774 3.226 14 H -0.207 1.207 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.247 4.247 18 C -0.224 4.224 19 N -0.257 5.257 20 C -0.127 4.127 21 C -0.130 4.130 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.019 0.981 29 H 0.158 0.842 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.093 0.907 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.633 -1.324 -9.456 12.224 hybrid contribution 1.356 1.600 1.264 2.449 sum -6.277 0.276 -8.191 10.324 Atomic orbital electron populations 1.21603 0.94755 1.01109 1.01697 1.21388 0.96464 0.94087 1.01881 1.21609 0.91618 0.96527 0.91620 0.92071 1.22467 0.97445 0.95671 0.93397 1.60486 1.11591 1.54375 1.03003 1.21232 0.88157 0.98754 0.93013 1.19114 0.93831 0.89737 0.94676 1.20773 1.40021 0.91797 1.00104 0.93440 1.25531 0.95353 0.97336 0.98567 1.70020 1.48898 1.03883 1.31504 0.85710 0.78631 0.77903 0.80393 1.20744 1.20874 1.19554 1.22976 0.92378 1.09080 1.00235 1.22803 1.03313 0.95699 1.00572 1.62389 1.56704 1.03638 1.02944 1.22421 0.98785 0.88343 1.03127 1.22487 0.95821 1.01017 0.93629 0.91849 0.92580 0.93937 0.92071 0.92004 0.92096 0.98136 0.84210 0.95885 0.93230 0.93240 0.90691 0.91145 0.90896 0.90015 0.89572 0.96807 0.91851 0.96341 0.90708 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.80 71.98 0.71 -2.68 16 2 C -0.10 -2.95 5.28 30.60 0.16 -2.79 16 3 C 0.10 3.02 1.96 44.91 0.09 3.11 16 4 H 0.06 2.13 8.03 -2.39 -0.02 2.12 16 5 C 0.04 1.55 4.24 86.30 0.37 1.92 16 6 N -0.66 -29.10 5.71 -513.90 -2.94 -32.04 16 7 C 0.12 5.61 4.76 86.30 0.41 6.02 16 8 C 0.03 1.34 2.15 -52.93 -0.11 1.22 16 9 C -0.49 -26.15 8.50 25.60 0.22 -25.93 16 10 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 11 C 0.03 1.63 4.48 84.66 0.38 2.01 16 12 N -0.90 -48.18 9.91 21.45 0.21 -47.97 16 13 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C -0.21 -9.43 9.96 30.62 0.30 -9.12 16 18 C -0.19 -8.16 9.92 30.62 0.30 -7.86 16 19 N -0.53 -14.36 4.41 -923.30 -4.08 -18.44 16 20 C 0.02 0.55 9.36 127.69 1.19 1.74 16 21 C 0.02 0.43 8.70 127.69 1.11 1.54 16 22 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.69 6.30 -2.39 -0.02 1.68 16 26 H 0.06 2.10 7.59 -2.39 -0.02 2.09 16 27 H 0.06 2.20 6.60 -2.39 -0.02 2.18 16 28 H 0.00 0.02 6.60 -2.39 -0.02 0.01 16 29 H 0.34 16.51 6.75 -89.70 -0.61 15.91 16 30 H 0.02 1.04 8.03 -2.38 -0.02 1.02 16 31 H 0.05 2.65 5.94 -2.39 -0.01 2.63 16 32 H 0.26 13.33 8.32 -92.71 -0.77 12.56 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.01 0.39 6.63 -2.39 -0.02 0.37 16 39 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 40 H 0.02 0.47 6.54 -2.39 -0.02 0.45 16 41 H 0.07 1.69 6.25 -2.39 -0.01 1.68 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -53.71 322.40 0.72 -52.99 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.36 Total: 32.12 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 5.13 Total: -30.81 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -6.80 Total: -98.45 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -53.71 0.72 -52.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388862907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.946 kcal (2) G-P(sol) polarization free energy of solvation -53.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds