Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47116 * 2 1 4 4 N 1.46898 * 109.47540 * 180.02562 * 3 2 1 5 5 C 1.48530 * 110.99800 * 287.40377 * 4 3 2 6 6 C 1.54935 * 103.22614 * 200.27774 * 5 4 3 7 7 C 1.54599 * 102.92407 * 37.40880 * 6 5 4 8 8 H 1.09000 * 110.39183 * 97.00098 * 7 6 5 9 9 N 1.46898 * 110.31163 * 219.13192 * 7 6 5 10 10 C 1.46906 * 110.99888 * 270.71529 * 9 7 6 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47239 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99798 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47142 * 60.00574 * 17 15 13 19 19 H 1.48506 * 109.47042 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47444 * 300.00415 * 17 15 13 21 21 C 1.47895 * 111.00222 * 170.00184 * 4 3 2 22 22 H 1.09004 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46782 * 299.99673 * 1 2 3 24 24 H 1.08993 * 109.47471 * 59.99908 * 1 2 3 25 25 H 1.09001 * 109.46782 * 240.00326 * 2 1 3 26 26 H 1.08993 * 109.47471 * 120.00092 * 2 1 3 27 27 H 1.08997 * 109.46705 * 60.00085 * 3 2 1 28 28 H 1.09001 * 109.47272 * 300.00603 * 3 2 1 29 29 H 1.09005 * 110.66518 * 318.70778 * 5 4 3 30 30 H 1.08992 * 110.67345 * 81.84121 * 5 4 3 31 31 H 1.09003 * 110.72099 * 279.05305 * 6 5 4 32 32 H 1.08996 * 110.72961 * 155.77035 * 6 5 4 33 33 H 1.00904 * 110.99913 * 34.66595 * 9 7 6 34 34 H 1.09004 * 109.47040 * 299.99934 * 10 9 7 35 35 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 36 36 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 37 37 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 38 38 H 1.08996 * 109.47261 * 300.00171 * 12 11 10 39 39 H 1.09000 * 109.46870 * 59.99782 * 12 11 10 40 40 H 0.97001 * 120.00663 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.91985 * 26.49301 * 21 4 3 42 42 H 1.09003 * 110.08158 * 265.29163 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0418 1.0277 1.3223 6 6 5.4896 1.5793 1.3101 7 6 5.3385 2.9312 0.5757 8 1 5.2547 3.7465 1.2943 9 7 6.4819 3.1563 -0.3187 10 6 7.5704 3.8498 0.3829 11 6 8.7405 4.0665 -0.5787 12 6 9.8739 4.7893 0.1517 13 6 11.0266 5.0022 -0.7954 14 1 10.9575 4.6569 -1.8164 15 6 12.1691 5.6387 -0.3587 16 7 12.2531 6.0596 0.8844 17 14 13.5976 5.9032 -1.5329 18 1 13.1464 6.7258 -2.6840 19 1 14.6979 6.6047 -0.8238 20 1 14.0845 4.5892 -2.0242 21 6 4.0389 2.8024 -0.2404 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.4645 1.4802 2.1286 30 1 4.0447 -0.0585 1.4125 31 1 6.1518 0.9123 0.7580 32 1 5.8532 1.7310 2.3264 33 1 6.8047 2.2879 -0.7184 34 1 7.2137 4.8145 0.7437 35 1 7.9011 3.2456 1.2277 36 1 9.0974 3.1019 -0.9399 37 1 8.4094 4.6708 -1.4233 38 1 9.5168 5.7538 0.5126 39 1 10.2050 4.1853 0.9965 40 1 13.0570 6.5071 1.1917 41 1 3.3158 3.5469 0.0930 42 1 4.2510 2.9399 -1.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389317164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -21.307204 kcal Electronic energy + Delta-G solvation = -16924.328263 eV Core-core repulsion = 14324.016150 eV Total energy + Delta-G solvation = -2600.312113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.39457 -36.25323 -34.37452 -33.06906 -31.28812 -29.89063 -28.25231 -25.99239 -24.87063 -22.40499 -22.13437 -20.81729 -20.68766 -19.81891 -16.44978 -16.15375 -15.91153 -15.41229 -14.91099 -14.50346 -14.19978 -13.90717 -13.63292 -13.40661 -12.73262 -12.52026 -12.32692 -12.11870 -12.01290 -11.87286 -11.49672 -11.30379 -11.26462 -11.06958 -10.86522 -10.80742 -10.75593 -10.54293 -10.46411 -9.66339 -9.29686 -9.03281 -8.56442 -8.31311 -8.10343 -5.96643 -3.98626 3.36102 3.39896 3.42946 3.79768 4.32995 4.49724 4.57411 4.62474 4.78581 4.81381 5.05646 5.12985 5.19947 5.26083 5.38614 5.39036 5.42319 5.48154 5.57715 5.72286 5.74718 5.78728 5.85815 5.89387 5.90134 5.99919 6.02232 6.10303 6.35532 6.72177 6.77068 6.82980 6.90881 7.17451 7.40360 7.67964 7.71897 7.87156 8.03896 8.47387 9.08433 9.65115 11.14805 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.077808 B = 0.003037 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.771954 B = 9217.631089 C = 9343.244520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.046 3.954 4 N -0.519 5.519 5 C 0.037 3.963 6 C -0.153 4.153 7 C 0.078 3.922 8 H 0.080 0.920 9 N -0.681 5.681 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.044 3.956 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.342 0.658 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.043 0.957 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.136 -10.653 1.024 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.082 4.082 4 N -0.243 5.243 5 C -0.091 4.091 6 C -0.193 4.193 7 C -0.033 4.033 8 H 0.098 0.902 9 N -0.312 5.312 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.085 4.085 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.112 -10.316 0.455 23.502 hybrid contribution 0.889 0.063 0.724 1.148 sum -20.223 -10.253 1.178 22.704 Atomic orbital electron populations 1.21747 0.95785 1.01694 1.01718 1.21473 0.95149 0.96409 1.02636 1.22322 0.87914 0.97235 1.00750 1.64767 1.07459 1.23475 1.28621 1.23184 0.94973 1.00729 0.90181 1.23270 0.96720 0.97935 1.01395 1.22398 0.91779 0.95910 0.93231 0.90152 1.60621 1.08220 1.28124 1.34220 1.22151 0.91213 0.97605 0.95971 1.21621 0.94421 1.00348 0.98114 1.19058 0.91747 0.95218 0.95505 1.21231 0.99889 1.37250 0.97340 0.92709 1.25034 0.98641 0.95738 0.95149 1.69953 1.28304 1.39869 1.15557 0.86650 0.81924 0.78339 0.81034 1.20215 1.21340 1.20267 1.22937 0.94746 0.88515 1.02257 0.92590 0.92961 0.92660 0.91140 0.92199 0.94846 0.90878 0.93932 0.90286 0.90479 0.91082 0.83942 0.91637 0.95772 0.93649 0.92569 0.96634 0.96855 0.93004 0.93908 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.94 6.02 -26.73 -0.16 -1.10 16 3 C 0.05 0.42 4.70 -3.82 -0.02 0.40 16 4 N -0.52 -5.60 5.24 -230.46 -1.21 -6.81 16 5 C 0.04 0.38 5.91 -1.90 -0.01 0.37 16 6 C -0.15 -1.72 6.72 -24.87 -0.17 -1.89 16 7 C 0.08 0.98 3.31 -66.35 -0.22 0.76 16 8 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 9 N -0.68 -10.13 6.20 -105.29 -0.65 -10.78 16 10 C 0.06 1.03 5.54 -3.82 -0.02 1.01 16 11 C -0.11 -2.26 5.41 -26.74 -0.14 -2.40 16 12 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 C 0.04 0.51 6.46 -2.76 -0.02 0.49 16 22 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.48 7.37 -51.93 -0.38 0.09 16 27 H 0.03 0.30 7.83 -51.93 -0.41 -0.11 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.04 0.41 7.81 -51.93 -0.41 0.00 16 30 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 31 H 0.08 0.91 7.56 -51.93 -0.39 0.52 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.34 4.94 8.10 -39.29 -0.32 4.62 16 34 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.04 0.47 7.77 -51.93 -0.40 0.06 16 42 H 0.09 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -29.86 332.75 -10.21 -40.08 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.14 Total: -1.50 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.94 Total: -16.34 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.13 Total: -44.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.86 -10.21 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389317164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.771 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds