Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47116 * 2 1 4 4 N 1.46898 * 109.47540 * 180.02562 * 3 2 1 5 5 C 1.48530 * 110.99800 * 287.40377 * 4 3 2 6 6 C 1.54935 * 103.22614 * 200.27774 * 5 4 3 7 7 C 1.54599 * 102.92407 * 37.40880 * 6 5 4 8 8 H 1.09000 * 110.39183 * 97.00098 * 7 6 5 9 9 N 1.46898 * 110.31163 * 219.13192 * 7 6 5 10 10 C 1.46906 * 110.99888 * 270.71529 * 9 7 6 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47473 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47239 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99798 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47142 * 60.00574 * 17 15 13 19 19 H 1.48506 * 109.47042 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47444 * 300.00415 * 17 15 13 21 21 C 1.47895 * 111.00222 * 170.00184 * 4 3 2 22 22 H 1.09004 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46782 * 299.99673 * 1 2 3 24 24 H 1.08993 * 109.47471 * 59.99908 * 1 2 3 25 25 H 1.09001 * 109.46782 * 240.00326 * 2 1 3 26 26 H 1.08993 * 109.47471 * 120.00092 * 2 1 3 27 27 H 1.08997 * 109.46705 * 60.00085 * 3 2 1 28 28 H 1.09001 * 109.47272 * 300.00603 * 3 2 1 29 29 H 1.09005 * 110.66518 * 318.70778 * 5 4 3 30 30 H 1.08992 * 110.67345 * 81.84121 * 5 4 3 31 31 H 1.09003 * 110.72099 * 279.05305 * 6 5 4 32 32 H 1.08996 * 110.72961 * 155.77035 * 6 5 4 33 33 H 1.00904 * 110.99913 * 34.66595 * 9 7 6 34 34 H 1.09004 * 109.47040 * 299.99934 * 10 9 7 35 35 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 36 36 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 37 37 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 38 38 H 1.08996 * 109.47261 * 300.00171 * 12 11 10 39 39 H 1.09000 * 109.46870 * 59.99782 * 12 11 10 40 40 H 0.97001 * 120.00663 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.91985 * 26.49301 * 21 4 3 42 42 H 1.09003 * 110.08158 * 265.29163 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0418 1.0277 1.3223 6 6 5.4896 1.5793 1.3101 7 6 5.3385 2.9312 0.5757 8 1 5.2547 3.7465 1.2943 9 7 6.4819 3.1563 -0.3187 10 6 7.5704 3.8498 0.3829 11 6 8.7405 4.0665 -0.5787 12 6 9.8739 4.7893 0.1517 13 6 11.0266 5.0022 -0.7954 14 1 10.9575 4.6569 -1.8164 15 6 12.1691 5.6387 -0.3587 16 7 12.2531 6.0596 0.8844 17 14 13.5976 5.9032 -1.5329 18 1 13.1464 6.7258 -2.6840 19 1 14.6979 6.6047 -0.8238 20 1 14.0845 4.5892 -2.0242 21 6 4.0389 2.8024 -0.2404 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.4645 1.4802 2.1286 30 1 4.0447 -0.0585 1.4125 31 1 6.1518 0.9123 0.7580 32 1 5.8532 1.7310 2.3264 33 1 6.8047 2.2879 -0.7184 34 1 7.2137 4.8145 0.7437 35 1 7.9011 3.2456 1.2277 36 1 9.0974 3.1019 -0.9399 37 1 8.4094 4.6708 -1.4233 38 1 9.5168 5.7538 0.5126 39 1 10.2050 4.1853 0.9965 40 1 13.0570 6.5071 1.1917 41 1 3.3158 3.5469 0.0930 42 1 4.2510 2.9399 -1.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389317164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -40.697191 kcal Electronic energy + Delta-G solvation = -16925.169076 eV Core-core repulsion = 14324.016150 eV Total energy + Delta-G solvation = -2601.152926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30841 -37.47784 -35.76213 -34.59826 -32.86444 -30.89768 -29.47123 -27.51890 -25.89396 -24.14825 -22.89891 -22.13555 -21.53574 -21.20272 -18.49985 -17.19159 -16.93971 -16.52115 -16.30313 -16.05425 -15.29908 -15.21252 -14.43593 -14.33913 -14.18391 -13.91420 -13.55912 -13.42550 -13.14391 -12.94412 -12.72955 -12.57482 -12.50162 -12.40257 -12.19795 -12.13779 -11.80250 -11.72943 -11.53430 -11.45781 -11.36394 -11.05839 -10.54804 -9.39331 -9.30794 -8.19956 -6.31060 1.40156 1.43584 1.51477 2.41326 2.97838 3.12917 3.21278 3.69526 3.74018 4.04901 4.11066 4.19716 4.28804 4.34232 4.39659 4.48054 4.52787 4.61532 4.67714 4.72630 4.78232 4.83696 4.89421 4.94628 4.99765 5.05519 5.12308 5.17292 5.20774 5.25208 5.30594 5.42735 5.52399 5.75309 5.85965 5.90223 6.08870 6.15180 6.28128 6.48416 6.85658 7.38032 8.91776 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.077808 B = 0.003037 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.771954 B = 9217.631089 C = 9343.244520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.046 3.954 4 N -0.529 5.529 5 C 0.043 3.957 6 C -0.150 4.150 7 C 0.076 3.924 8 H 0.078 0.922 9 N -0.682 5.682 10 C 0.074 3.926 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.050 3.950 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.345 0.655 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.050 0.950 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.825 -11.408 0.374 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.082 4.082 4 N -0.254 5.254 5 C -0.085 4.085 6 C -0.190 4.190 7 C -0.035 4.035 8 H 0.096 0.904 9 N -0.312 5.312 10 C -0.055 4.055 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.079 4.079 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.827 -11.086 -0.201 24.482 hybrid contribution 1.063 0.290 0.951 1.455 sum -20.764 -10.796 0.750 23.415 Atomic orbital electron populations 1.21723 0.94637 1.02272 1.02014 1.21434 0.96103 0.95477 1.02239 1.22374 0.86802 0.98079 1.00964 1.64770 1.08637 1.22784 1.29182 1.23172 0.94017 1.01258 0.90080 1.23215 0.97605 0.96937 1.01243 1.22451 0.91193 0.96675 0.93166 0.90401 1.60548 1.07754 1.28396 1.34542 1.21835 0.90796 0.97844 0.95025 1.21372 0.94018 0.99629 0.98024 1.18963 0.93125 0.94165 0.94945 1.21681 1.01031 1.37559 0.97963 0.92262 1.26008 1.01774 0.95227 0.96977 1.70086 1.29310 1.40479 1.17546 0.85484 0.78028 0.78729 0.78712 1.19179 1.20756 1.19123 1.22810 0.94336 0.89408 1.01312 0.91900 0.92573 0.92463 0.91937 0.92166 0.94411 0.90848 0.93147 0.89397 0.91011 0.90724 0.83542 0.92132 0.95800 0.93170 0.92965 0.99078 0.99082 0.92751 0.93157 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.11 -1.62 6.02 30.60 0.18 -1.43 16 3 C 0.05 0.75 4.70 86.30 0.41 1.16 16 4 N -0.53 -10.59 5.24 -883.05 -4.63 -15.22 16 5 C 0.04 0.78 5.91 86.65 0.51 1.29 16 6 C -0.15 -3.17 6.72 31.80 0.21 -2.96 16 7 C 0.08 1.83 3.31 45.80 0.15 1.98 16 8 H 0.08 1.93 7.82 -2.39 -0.02 1.91 16 9 N -0.68 -19.73 6.20 -487.03 -3.02 -22.75 16 10 C 0.07 2.58 5.54 86.30 0.48 3.06 16 11 C -0.09 -3.92 5.41 30.59 0.17 -3.75 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 16 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.05 1.09 6.46 86.45 0.56 1.65 16 22 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.84 7.37 -2.39 -0.02 0.83 16 27 H 0.04 0.59 7.83 -2.39 -0.02 0.57 16 28 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 29 H 0.05 0.85 7.81 -2.38 -0.02 0.83 16 30 H 0.09 1.47 7.80 -2.39 -0.02 1.45 16 31 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.35 9.64 8.10 -89.69 -0.73 8.91 16 34 H 0.06 2.17 8.07 -2.38 -0.02 2.15 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.05 1.02 7.77 -2.39 -0.02 1.01 16 42 H 0.08 1.98 7.93 -2.39 -0.02 1.96 16 Total: -1.00 -63.26 332.75 -0.89 -64.15 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.22 Total: 13.92 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.23 Total: -29.62 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -7.37 Total: -95.44 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.26 -0.89 -64.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389317164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.454 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds