Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47020 * 2 1 4 4 N 1.46904 * 109.47154 * 185.76599 * 3 2 1 5 5 C 1.47908 * 110.99688 * 76.26433 * 4 3 2 6 6 C 1.53988 * 107.05545 * 214.15687 * 5 4 3 7 7 C 1.54596 * 105.14258 * 1.22751 * 6 5 4 8 8 C 1.48532 * 110.99732 * 318.87039 * 4 3 2 9 9 H 1.08998 * 110.67390 * 41.28661 * 8 4 3 10 10 C 1.53002 * 110.66855 * 278.14850 * 8 4 3 11 11 N 1.46908 * 109.46627 * 53.80340 * 10 8 4 12 12 C 1.46897 * 110.99580 * 170.75890 * 11 10 8 13 13 H 1.09001 * 109.47459 * 35.00250 * 12 11 10 14 14 C 1.52998 * 109.47509 * 274.99873 * 12 11 10 15 15 C 1.50701 * 109.46743 * 154.99786 * 12 11 10 16 16 H 1.07997 * 120.00258 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99743 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00400 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99976 * 180.02562 * 17 15 12 20 20 H 1.48490 * 109.47465 * 89.99595 * 19 17 15 21 21 H 1.48496 * 109.46889 * 209.99880 * 19 17 15 22 22 H 1.48502 * 109.46824 * 329.99347 * 19 17 15 23 23 H 1.08997 * 109.47086 * 59.99937 * 1 2 3 24 24 H 1.09006 * 109.46917 * 299.99483 * 1 2 3 25 25 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47086 * 120.00063 * 2 1 3 27 27 H 1.09003 * 109.46665 * 239.99789 * 2 1 3 28 28 H 1.08997 * 109.47895 * 305.76954 * 3 2 1 29 29 H 1.09001 * 109.46939 * 65.77470 * 3 2 1 30 30 H 1.09003 * 109.91333 * 333.51113 * 5 4 3 31 31 H 1.08994 * 109.91230 * 94.80690 * 5 4 3 32 32 H 1.09004 * 110.30730 * 120.14378 * 6 5 4 33 33 H 1.08998 * 110.31217 * 242.30488 * 6 5 4 34 34 H 1.09000 * 110.72475 * 140.31429 * 7 6 5 35 35 H 1.09000 * 110.72234 * 263.42223 * 7 6 5 36 36 H 1.08997 * 109.46875 * 173.79834 * 10 8 4 37 37 H 1.08993 * 109.46941 * 293.80387 * 10 8 4 38 38 H 1.00897 * 110.99543 * 294.70948 * 11 10 8 39 39 H 1.09002 * 109.47138 * 59.99909 * 14 12 11 40 40 H 1.08992 * 109.47451 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47068 * 300.00617 * 14 12 11 42 42 H 0.96996 * 120.00631 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5024 1.4448 -0.1391 5 6 3.9025 1.1629 -1.5349 6 6 5.2145 0.3590 -1.4751 7 6 5.5098 0.1794 0.0317 8 6 4.1170 0.3712 0.6830 9 1 3.5322 -0.5462 0.6174 10 6 4.2589 0.8201 2.1388 11 7 2.9556 1.2771 2.6394 12 6 3.0005 1.5087 4.0893 13 1 3.9813 1.8958 4.3653 14 6 2.7470 0.1910 4.8244 15 6 1.9400 2.5090 4.4712 16 1 1.2968 2.9302 3.7128 17 6 1.7910 2.8864 5.7890 18 7 2.5739 2.3731 6.7126 19 14 0.4760 4.1258 6.2626 20 1 -0.7853 3.4111 6.5835 21 1 0.9255 4.8946 7.4508 22 1 0.2428 5.0572 5.1297 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.5949 1.9853 -0.8338 29 1 1.7635 1.9255 0.9372 30 1 3.1296 0.5760 -2.0313 31 1 4.0641 2.0981 -2.0709 32 1 5.0855 -0.6118 -1.9537 33 1 6.0205 0.9140 -1.9551 34 1 5.8953 -0.8201 0.2328 35 1 6.2096 0.9387 0.3807 36 1 4.6078 -0.0162 2.7444 37 1 4.9780 1.6370 2.1986 38 1 2.6506 2.1052 2.1502 39 1 3.5140 -0.5326 4.5481 40 1 2.7798 0.3629 5.9001 41 1 1.7662 -0.1962 4.5484 42 1 2.4688 2.6383 7.6397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390012303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = 3.455626 kcal Electronic energy + Delta-G solvation = -18494.223409 eV Core-core repulsion = 15894.985092 eV Total energy + Delta-G solvation = -2599.238316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.43198 -35.54044 -34.11380 -32.55546 -30.46043 -30.02864 -27.39285 -25.43456 -25.00646 -23.38171 -21.84598 -20.83708 -19.54092 -19.01008 -16.70638 -16.07559 -15.33172 -14.79184 -14.44003 -14.34101 -13.81379 -13.36992 -13.09215 -12.89225 -12.64155 -12.30958 -11.90456 -11.53305 -11.40853 -11.32378 -11.09191 -11.04774 -11.00195 -10.85698 -10.72755 -10.54396 -10.35731 -10.15023 -10.10167 -9.97005 -9.57545 -8.73825 -8.42584 -7.99043 -7.12396 -5.97686 -4.03527 3.32556 3.38836 3.42078 4.29476 4.43925 4.75615 4.88011 5.07072 5.27827 5.29718 5.33484 5.36927 5.54662 5.63492 5.69847 5.78942 5.85435 5.88043 5.98846 6.01293 6.08288 6.12647 6.21583 6.30339 6.35770 6.42555 6.53943 6.66841 6.75374 6.94988 7.20892 7.25709 7.31774 7.40915 7.59400 7.83507 7.97938 8.34720 8.50015 8.77960 9.08664 9.62237 11.08691 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.006463 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.667666 B = 4331.444584 C = 4773.835917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.153 4.153 3 C 0.045 3.955 4 N -0.511 5.511 5 C 0.033 3.967 6 C -0.129 4.129 7 C -0.122 4.122 8 C 0.062 3.938 9 H 0.068 0.932 10 C 0.076 3.924 11 N -0.687 5.687 12 C 0.210 3.790 13 H -0.002 1.002 14 C -0.123 4.123 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.337 0.663 39 H 0.002 0.998 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -4.696 -14.314 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C -0.084 4.084 4 N -0.234 5.234 5 C -0.095 4.095 6 C -0.167 4.167 7 C -0.160 4.160 8 C -0.046 4.046 9 H 0.085 0.915 10 C -0.054 4.054 11 N -0.322 5.322 12 C 0.102 3.898 13 H 0.016 0.984 14 C -0.181 4.181 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.158 0.842 39 H 0.021 0.979 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.113 -4.769 -13.878 14.826 hybrid contribution -0.512 0.632 0.088 0.818 sum 1.601 -4.137 -13.790 14.486 Atomic orbital electron populations 1.21658 0.95912 1.01041 1.01680 1.22093 0.96248 0.98976 1.01824 1.22537 0.86850 0.95923 1.03058 1.64913 1.09218 1.44408 1.04858 1.22839 0.95959 0.99047 0.91669 1.22361 0.97572 0.99654 0.97138 1.22536 0.97498 1.01560 0.94450 1.23050 0.93603 0.93852 0.94103 0.91456 1.21767 0.92703 0.98851 0.92118 1.60996 1.24765 1.39196 1.07214 1.19076 0.95537 0.93181 0.82000 0.98388 1.21701 0.97251 0.96116 1.03028 1.21257 1.17422 1.23443 0.93123 0.92388 1.24913 0.96125 0.96452 0.96536 1.69898 1.38486 1.43466 1.01139 0.86556 0.81893 0.81314 0.77975 1.20706 1.21348 1.19951 0.93681 0.91883 0.93441 0.89704 0.93680 0.92429 0.88041 0.94047 0.91027 0.92039 0.91483 0.91477 0.90911 0.91864 0.95902 0.84196 0.97883 0.90302 0.95150 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.15 -2.15 4.65 -26.73 -0.12 -2.27 16 3 C 0.04 0.67 4.65 -3.82 -0.02 0.65 16 4 N -0.51 -7.61 5.06 -222.63 -1.13 -8.74 16 5 C 0.03 0.41 6.40 -2.75 -0.02 0.39 16 6 C -0.13 -1.42 6.93 -25.38 -0.18 -1.60 16 7 C -0.12 -1.54 6.50 -24.87 -0.16 -1.70 16 8 C 0.06 0.94 2.34 -65.78 -0.15 0.79 16 9 H 0.07 1.04 5.31 -51.93 -0.28 0.77 16 10 C 0.08 1.41 5.36 -3.82 -0.02 1.39 16 11 N -0.69 -14.55 5.16 -107.95 -0.56 -15.11 16 12 C 0.21 5.35 2.59 -68.87 -0.18 5.18 16 13 H 0.00 -0.04 7.86 -51.93 -0.41 -0.45 16 14 C -0.12 -3.08 9.18 37.16 0.34 -2.73 16 15 C -0.51 -14.18 8.59 -34.44 -0.30 -14.47 16 16 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.37 6.26 -51.93 -0.33 1.05 16 27 H 0.04 0.59 6.86 -51.93 -0.36 0.23 16 28 H 0.06 0.79 7.99 -51.93 -0.42 0.37 16 29 H 0.10 1.76 5.14 -51.93 -0.27 1.50 16 30 H 0.04 0.49 6.59 -51.93 -0.34 0.15 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 36 H 0.06 1.19 7.26 -51.93 -0.38 0.81 16 37 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 38 H 0.34 7.20 5.19 -39.29 -0.20 6.99 16 39 H 0.00 0.05 7.36 -51.93 -0.38 -0.33 16 40 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -27.90 313.66 -9.29 -37.19 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.41 Total: 4.90 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.53 Total: -14.31 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.06 Total: -48.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.90 -9.29 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390012303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.648 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds