Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47020 * 2 1 4 4 N 1.46904 * 109.47154 * 185.76599 * 3 2 1 5 5 C 1.47908 * 110.99688 * 76.26433 * 4 3 2 6 6 C 1.53988 * 107.05545 * 214.15687 * 5 4 3 7 7 C 1.54596 * 105.14258 * 1.22751 * 6 5 4 8 8 C 1.48532 * 110.99732 * 318.87039 * 4 3 2 9 9 H 1.08998 * 110.67390 * 41.28661 * 8 4 3 10 10 C 1.53002 * 110.66855 * 278.14850 * 8 4 3 11 11 N 1.46908 * 109.46627 * 53.80340 * 10 8 4 12 12 C 1.46897 * 110.99580 * 170.75890 * 11 10 8 13 13 H 1.09001 * 109.47459 * 35.00250 * 12 11 10 14 14 C 1.52998 * 109.47509 * 274.99873 * 12 11 10 15 15 C 1.50701 * 109.46743 * 154.99786 * 12 11 10 16 16 H 1.07997 * 120.00258 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99743 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00400 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99976 * 180.02562 * 17 15 12 20 20 H 1.48490 * 109.47465 * 89.99595 * 19 17 15 21 21 H 1.48496 * 109.46889 * 209.99880 * 19 17 15 22 22 H 1.48502 * 109.46824 * 329.99347 * 19 17 15 23 23 H 1.08997 * 109.47086 * 59.99937 * 1 2 3 24 24 H 1.09006 * 109.46917 * 299.99483 * 1 2 3 25 25 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47086 * 120.00063 * 2 1 3 27 27 H 1.09003 * 109.46665 * 239.99789 * 2 1 3 28 28 H 1.08997 * 109.47895 * 305.76954 * 3 2 1 29 29 H 1.09001 * 109.46939 * 65.77470 * 3 2 1 30 30 H 1.09003 * 109.91333 * 333.51113 * 5 4 3 31 31 H 1.08994 * 109.91230 * 94.80690 * 5 4 3 32 32 H 1.09004 * 110.30730 * 120.14378 * 6 5 4 33 33 H 1.08998 * 110.31217 * 242.30488 * 6 5 4 34 34 H 1.09000 * 110.72475 * 140.31429 * 7 6 5 35 35 H 1.09000 * 110.72234 * 263.42223 * 7 6 5 36 36 H 1.08997 * 109.46875 * 173.79834 * 10 8 4 37 37 H 1.08993 * 109.46941 * 293.80387 * 10 8 4 38 38 H 1.00897 * 110.99543 * 294.70948 * 11 10 8 39 39 H 1.09002 * 109.47138 * 59.99909 * 14 12 11 40 40 H 1.08992 * 109.47451 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47068 * 300.00617 * 14 12 11 42 42 H 0.96996 * 120.00631 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5024 1.4448 -0.1391 5 6 3.9025 1.1629 -1.5349 6 6 5.2145 0.3590 -1.4751 7 6 5.5098 0.1794 0.0317 8 6 4.1170 0.3712 0.6830 9 1 3.5322 -0.5462 0.6174 10 6 4.2589 0.8201 2.1388 11 7 2.9556 1.2771 2.6394 12 6 3.0005 1.5087 4.0893 13 1 3.9813 1.8958 4.3653 14 6 2.7470 0.1910 4.8244 15 6 1.9400 2.5090 4.4712 16 1 1.2968 2.9302 3.7128 17 6 1.7910 2.8864 5.7890 18 7 2.5739 2.3731 6.7126 19 14 0.4760 4.1258 6.2626 20 1 -0.7853 3.4111 6.5835 21 1 0.9255 4.8946 7.4508 22 1 0.2428 5.0572 5.1297 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.5949 1.9853 -0.8338 29 1 1.7635 1.9255 0.9372 30 1 3.1296 0.5760 -2.0313 31 1 4.0641 2.0981 -2.0709 32 1 5.0855 -0.6118 -1.9537 33 1 6.0205 0.9140 -1.9551 34 1 5.8953 -0.8201 0.2328 35 1 6.2096 0.9387 0.3807 36 1 4.6078 -0.0162 2.7444 37 1 4.9780 1.6370 2.1986 38 1 2.6506 2.1052 2.1502 39 1 3.5140 -0.5326 4.5481 40 1 2.7798 0.3629 5.9001 41 1 1.7662 -0.1962 4.5484 42 1 2.4688 2.6383 7.6397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390012303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -14.153249 kcal Electronic energy + Delta-G solvation = -18494.986987 eV Core-core repulsion = 15894.985092 eV Total energy + Delta-G solvation = -2600.001895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59849 -37.37550 -35.19355 -34.49989 -31.68958 -31.50864 -29.00523 -27.33079 -26.34858 -24.77358 -23.10656 -22.01787 -21.30163 -20.27413 -18.51369 -17.47291 -16.85700 -16.36392 -15.86427 -15.56800 -15.24574 -14.98369 -14.61991 -14.14063 -14.03337 -13.53409 -13.36511 -13.32869 -12.95109 -12.71941 -12.48257 -12.45654 -12.34021 -12.20000 -12.16094 -12.12436 -11.99058 -11.90581 -11.53406 -11.24711 -11.05210 -10.78811 -10.55603 -9.16689 -8.90325 -8.11596 -6.25365 1.42125 1.42598 1.53039 2.42230 3.15929 3.18448 3.55613 3.84976 3.98955 4.13398 4.17898 4.25726 4.37769 4.50267 4.51855 4.66391 4.74958 4.78106 4.82925 4.86845 4.91260 5.02049 5.05081 5.07693 5.11220 5.13853 5.24839 5.26559 5.31616 5.34565 5.48772 5.51144 5.56424 5.69493 5.89853 6.14677 6.24201 6.28648 6.54236 6.83781 7.06075 7.45045 8.94147 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.006463 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.667666 B = 4331.444584 C = 4773.835917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 C 0.048 3.952 4 N -0.528 5.528 5 C 0.032 3.968 6 C -0.121 4.121 7 C -0.120 4.120 8 C 0.068 3.932 9 H 0.068 0.932 10 C 0.078 3.922 11 N -0.675 5.675 12 C 0.213 3.787 13 H -0.038 1.038 14 C -0.109 4.109 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.961 3.039 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.008 0.992 38 H 0.336 0.664 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -4.931 -16.265 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.183 4.183 3 C -0.080 4.080 4 N -0.252 5.252 5 C -0.095 4.095 6 C -0.159 4.159 7 C -0.158 4.158 8 C -0.041 4.041 9 H 0.086 0.914 10 C -0.053 4.053 11 N -0.309 5.309 12 C 0.105 3.895 13 H -0.021 1.021 14 C -0.168 4.168 15 C -0.571 4.571 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.158 0.842 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.725 -5.011 -15.852 16.714 hybrid contribution -0.349 0.704 0.672 1.034 sum 1.376 -4.307 -15.180 15.839 Atomic orbital electron populations 1.21631 0.95217 1.01637 1.01524 1.21975 0.96800 0.98162 1.01320 1.22417 0.87227 0.96373 1.02000 1.64837 1.09139 1.44598 1.06624 1.22911 0.96903 0.99862 0.89873 1.22353 0.97210 1.00596 0.95776 1.22529 0.95535 1.02213 0.95557 1.22907 0.95539 0.93691 0.91914 0.91408 1.21826 0.90860 0.97950 0.94647 1.60970 1.26386 1.38851 1.04735 1.18901 0.93131 0.92870 0.84613 1.02083 1.21503 0.97602 0.96324 1.01327 1.21561 1.17902 1.24148 0.93479 0.92505 1.25729 0.98195 0.98256 0.96485 1.70028 1.39858 1.44551 1.01420 0.85512 0.79178 0.78968 0.77697 1.20048 1.20958 1.19251 0.91988 0.93854 0.92488 0.92113 0.92085 0.91020 0.91069 0.93078 0.90426 0.90275 0.90097 0.89967 0.91739 0.92469 0.97339 0.84236 0.96158 0.92718 0.95389 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.14 -3.84 4.65 30.59 0.14 -3.70 16 3 C 0.05 1.39 4.65 86.30 0.40 1.79 16 4 N -0.53 -15.06 5.06 -858.26 -4.34 -19.40 16 5 C 0.03 0.70 6.40 86.44 0.55 1.26 16 6 C -0.12 -2.28 6.93 31.47 0.22 -2.06 16 7 C -0.12 -2.79 6.50 31.80 0.21 -2.58 16 8 C 0.07 1.99 2.34 45.26 0.11 2.09 16 9 H 0.07 2.01 5.31 -2.39 -0.01 2.00 16 10 C 0.08 2.91 5.36 86.30 0.46 3.37 16 11 N -0.68 -29.29 5.16 -495.45 -2.56 -31.84 16 12 C 0.21 11.24 2.59 44.17 0.11 11.35 16 13 H -0.04 -2.26 7.86 -2.39 -0.02 -2.28 16 14 C -0.11 -5.60 9.18 71.98 0.66 -4.93 16 15 C -0.53 -29.96 8.59 25.60 0.22 -29.74 16 16 H 0.06 3.14 7.62 -2.91 -0.02 3.11 16 17 C 0.01 0.69 5.30 84.66 0.45 1.14 16 18 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 19 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.93 6.26 -2.39 -0.01 1.91 16 27 H 0.06 1.43 6.86 -2.39 -0.02 1.42 16 28 H 0.07 1.84 7.99 -2.39 -0.02 1.82 16 29 H 0.07 2.50 5.14 -2.39 -0.01 2.48 16 30 H 0.05 1.03 6.59 -2.39 -0.02 1.01 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 36 H 0.06 2.18 7.26 -2.39 -0.02 2.16 16 37 H 0.01 0.34 7.98 -2.39 -0.02 0.32 16 38 H 0.34 14.77 5.19 -89.70 -0.47 14.30 16 39 H 0.02 0.92 7.36 -2.39 -0.02 0.90 16 40 H 0.05 3.07 6.07 -2.39 -0.01 3.05 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -60.22 313.66 0.13 -60.09 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.51 Total: 23.51 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.25 Total: -24.81 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -6.66 Total: -105.10 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.22 0.13 -60.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390012303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.938 kcal (2) G-P(sol) polarization free energy of solvation -60.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds