Wall clock time and date at job start Mon Mar 30 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 H 1.08998 * 109.47416 * 57.46248 * 3 2 1 5 5 C 1.50701 * 109.47175 * 177.46211 * 3 2 1 6 6 H 1.08000 * 120.00028 * 119.99775 * 5 3 2 7 7 C 1.37874 * 120.00253 * 299.99868 * 5 3 2 8 8 N 1.31521 * 119.99484 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00357 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47108 * 60.00072 * 9 7 5 11 11 H 1.48498 * 109.47441 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 300.00105 * 9 7 5 13 13 N 1.46900 * 109.46649 * 297.45941 * 3 2 1 14 14 C 1.46905 * 110.99559 * 147.63660 * 13 3 2 15 15 C 1.52997 * 112.85259 * 291.71061 * 14 13 3 16 16 N 1.46900 * 109.46992 * 56.33935 * 15 14 13 17 17 C 1.46896 * 110.99965 * 75.04052 * 16 15 14 18 18 C 1.46903 * 110.99713 * 198.99217 * 16 15 14 19 19 C 1.53781 * 113.61233 * 62.90714 * 14 13 3 20 20 C 1.53958 * 87.02110 * 89.22665 * 19 14 13 21 21 C 1.53782 * 87.10967 * 25.36134 * 20 19 14 22 22 H 1.09003 * 109.46544 * 47.33859 * 1 2 3 23 23 H 1.09003 * 109.46676 * 167.33098 * 1 2 3 24 24 H 1.08995 * 109.46730 * 287.33447 * 1 2 3 25 25 H 1.09004 * 109.47460 * 239.99466 * 2 1 3 26 26 H 1.09008 * 109.47076 * 119.99854 * 2 1 3 27 27 H 0.97007 * 119.99652 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00450 * 271.58899 * 13 3 2 29 29 H 1.08998 * 109.47044 * 176.34435 * 15 14 13 30 30 H 1.09003 * 109.46617 * 296.34398 * 15 14 13 31 31 H 1.08998 * 109.47510 * 52.69416 * 17 16 15 32 32 H 1.08994 * 109.47208 * 172.69724 * 17 16 15 33 33 H 1.08997 * 109.46985 * 292.69555 * 17 16 15 34 34 H 1.08998 * 109.47261 * 56.24912 * 18 16 15 35 35 H 1.09000 * 109.47020 * 176.24420 * 18 16 15 36 36 H 1.08998 * 109.47170 * 296.24899 * 18 16 15 37 37 H 1.09003 * 113.61452 * 203.74639 * 19 14 13 38 38 H 1.08997 * 113.61703 * 334.65084 * 19 14 13 39 39 H 1.08997 * 113.53623 * 270.80901 * 20 19 14 40 40 H 1.09000 * 113.74083 * 139.93921 * 20 19 14 41 41 H 1.08998 * 113.61580 * 220.08879 * 21 20 19 42 42 H 1.09001 * 113.69197 * 89.19818 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6401 1.9694 0.8663 5 6 3.5457 1.4430 0.0629 6 1 4.1192 1.8987 -0.7307 7 6 4.1912 0.8615 1.1335 8 7 3.4928 0.3060 2.0997 9 14 6.0575 0.8614 1.2112 10 1 6.5531 2.2614 1.2108 11 1 6.5013 0.1802 2.4539 12 1 6.6020 0.1433 0.0310 13 7 1.6011 2.1170 -1.2290 14 6 1.3616 3.5462 -0.9882 15 6 0.1515 3.8025 -0.0878 16 7 0.3260 3.0861 1.1827 17 6 1.3073 3.7650 2.0394 18 6 -0.9583 2.9264 1.8777 19 6 2.6212 4.3186 -0.5619 20 6 2.8812 4.5620 -2.0597 21 6 1.3669 4.3961 -2.2699 22 1 -0.3632 0.6965 -0.7558 23 1 -0.3633 -1.0027 -0.2254 24 1 -0.3632 0.3062 0.9810 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.9469 -0.1027 2.8531 28 1 2.2687 1.9826 -1.9734 29 1 0.0633 4.8713 0.1068 30 1 -0.7520 3.4477 -0.5839 31 1 1.0315 4.8140 2.1470 32 1 1.3227 3.2908 3.0206 33 1 2.2960 3.6941 1.5860 34 1 -1.6654 2.4178 1.2223 35 1 -0.8112 2.3354 2.7817 36 1 -1.3514 3.9073 2.1447 37 1 2.4066 5.2291 -0.0024 38 1 3.3751 3.6940 -0.0828 39 1 3.4758 3.7795 -2.5310 40 1 3.2460 5.5642 -2.2846 41 1 1.1096 3.8340 -3.1676 42 1 0.8074 5.3271 -2.1787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393587086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:59 Heat of formation + Delta-G solvation = 40.665555 kcal Electronic energy + Delta-G solvation = -19625.271680 eV Core-core repulsion = 17027.646907 eV Total energy + Delta-G solvation = -2597.624773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53005 -35.99745 -34.54394 -31.59070 -29.84831 -27.97212 -27.24186 -25.74564 -24.71670 -23.15939 -22.24881 -20.51250 -19.18686 -18.05680 -16.48972 -15.38663 -14.75851 -14.72566 -14.46082 -13.98647 -13.63094 -13.11253 -12.67095 -12.53355 -12.33907 -11.85953 -11.67554 -11.53447 -11.35116 -11.12621 -10.95177 -10.92869 -10.89271 -10.51830 -10.38500 -10.36573 -9.92101 -9.74114 -9.43271 -9.28007 -9.06732 -8.67719 -8.27413 -7.12728 -6.96345 -5.80563 -3.87531 3.34349 3.39989 3.43119 4.50606 4.53757 5.16109 5.26206 5.40779 5.42332 5.45482 5.71000 5.75501 5.79804 5.93727 6.04564 6.14613 6.20782 6.23588 6.31104 6.33893 6.37449 6.46951 6.66705 6.77112 6.81848 6.85456 6.94333 7.02511 7.21956 7.47801 7.58695 7.67121 7.69382 7.80220 7.91301 8.18396 8.41420 8.50344 8.63876 9.12537 9.31316 9.74061 11.18406 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.011458 C = 0.009537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.473159 B = 2443.135377 C = 2935.376703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C 0.175 3.825 4 H 0.123 0.877 5 C -0.532 4.532 6 H 0.046 0.954 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.281 1.281 13 N -0.658 5.658 14 C 0.119 3.881 15 C 0.080 3.920 16 N -0.506 5.506 17 C 0.020 3.980 18 C 0.024 3.976 19 C -0.183 4.183 20 C -0.141 4.141 21 C -0.139 4.139 22 H 0.049 0.951 23 H 0.010 0.990 24 H 0.037 0.963 25 H 0.014 0.986 26 H 0.082 0.918 27 H 0.256 0.744 28 H 0.319 0.681 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 7.304 -2.582 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C 0.068 3.932 4 H 0.140 0.860 5 C -0.572 4.572 6 H 0.064 0.936 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.207 1.207 13 N -0.287 5.287 14 C 0.026 3.974 15 C -0.049 4.049 16 N -0.229 5.229 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.222 4.222 20 C -0.179 4.179 21 C -0.177 4.177 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.033 0.967 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.379 6.537 -2.402 9.444 hybrid contribution 1.874 1.030 0.261 2.154 sum -4.505 7.567 -2.141 9.063 Atomic orbital electron populations 1.21649 0.99338 0.97438 1.00237 1.21415 0.91899 1.00100 1.00351 1.20227 0.91282 0.91473 0.90230 0.86024 1.21974 0.93517 1.36209 1.05481 0.93613 1.24844 0.96826 0.95664 0.96075 1.69899 1.34278 1.38011 1.09804 0.86954 0.87634 0.77933 0.77144 1.20680 1.21527 1.20664 1.60717 1.50630 1.06103 1.11222 1.21719 0.92884 0.90126 0.92681 1.22028 0.98438 0.94044 0.90350 1.62211 1.07892 1.48809 1.03959 1.22615 0.98429 0.94003 0.97701 1.22426 0.91842 0.98793 0.99354 1.24004 1.02151 1.00517 0.95515 1.22778 0.96120 1.00447 0.98532 1.23093 0.96510 0.99434 0.98683 0.93185 0.97048 0.94413 0.96697 0.89932 0.93339 0.86413 0.95722 0.91306 0.97397 0.91957 0.88940 0.91823 0.91666 0.97079 0.92264 0.87578 0.90585 0.92847 0.91643 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.93 37.16 0.37 -2.38 16 2 C -0.10 -2.42 5.44 -26.73 -0.15 -2.57 16 3 C 0.17 4.11 1.40 -68.86 -0.10 4.01 16 4 H 0.12 2.89 2.73 -58.09 -0.16 2.73 16 5 C -0.53 -13.78 6.41 -34.44 -0.22 -14.01 16 6 H 0.05 1.20 7.22 -52.49 -0.38 0.82 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.34 11.30 55.43 0.63 -23.71 16 9 Si 0.87 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.66 -13.56 5.39 -93.43 -0.50 -14.07 16 14 C 0.12 2.13 0.98 -130.79 -0.13 2.00 16 15 C 0.08 1.35 4.69 -3.83 -0.02 1.33 16 16 N -0.51 -9.14 2.31 -251.27 -0.58 -9.72 16 17 C 0.02 0.37 7.85 60.06 0.47 0.84 16 18 C 0.02 0.37 9.22 60.07 0.55 0.93 16 19 C -0.18 -3.31 4.82 -25.83 -0.12 -3.43 16 20 C -0.14 -2.27 7.76 -25.82 -0.20 -2.47 16 21 C -0.14 -2.12 7.32 -25.92 -0.19 -2.31 16 22 H 0.05 1.04 7.35 -51.93 -0.38 0.66 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.04 0.79 7.84 -51.93 -0.41 0.38 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 2.26 6.01 -51.92 -0.31 1.94 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.32 6.76 7.41 -39.29 -0.29 6.47 16 29 H 0.02 0.39 7.83 -51.93 -0.41 -0.02 16 30 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.01 0.12 7.93 -51.93 -0.41 -0.29 16 32 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 33 H 0.09 1.91 4.90 -51.93 -0.25 1.66 16 34 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 35 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.06 1.00 7.80 -51.93 -0.41 0.60 16 38 H 0.11 2.30 4.61 -51.93 -0.24 2.06 16 39 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -26.48 309.47 -8.02 -34.50 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.38 Total: 8.67 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.33 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.46 Total: -47.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.48 -8.02 -34.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393587086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.163 kcal (2) G-P(sol) polarization free energy of solvation -26.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds