Wall clock time and date at job start Mon Mar 30 2020 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46734 * 2 1 4 4 N 1.46890 * 109.47244 * 119.99577 * 2 1 3 5 5 C 1.46901 * 111.00406 * 294.39015 * 4 2 1 6 6 C 1.50691 * 109.47513 * 77.27444 * 5 4 2 7 7 H 1.08002 * 120.00297 * 0.94972 * 6 5 4 8 8 C 1.37872 * 120.00313 * 180.95874 * 6 5 4 9 9 N 1.31523 * 119.99978 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00554 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47658 * 119.99569 * 10 8 6 13 13 H 1.48498 * 109.47358 * 239.99860 * 10 8 6 14 14 C 1.46902 * 111.00150 * 170.42978 * 4 2 1 15 15 C 1.53003 * 109.46804 * 293.95788 * 14 4 2 16 16 H 1.09000 * 110.33359 * 64.29772 * 15 14 4 17 17 C 1.54913 * 110.36867 * 186.55320 * 15 14 4 18 18 C 1.55253 * 101.59629 * 155.82005 * 17 15 14 19 19 C 1.54324 * 103.08749 * 324.48372 * 18 17 15 20 20 N 1.47445 * 107.22746 * 22.20849 * 19 18 17 21 21 C 1.46899 * 110.99865 * 123.26299 * 20 19 18 22 22 H 1.08995 * 109.47242 * 307.56216 * 1 2 3 23 23 H 1.09002 * 109.46888 * 67.55908 * 1 2 3 24 24 H 1.08996 * 109.46679 * 187.55973 * 1 2 3 25 25 H 1.08995 * 109.47028 * 240.00540 * 2 1 3 26 26 H 1.08997 * 109.47001 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46961 * 299.99726 * 3 2 1 28 28 H 1.08991 * 109.47120 * 60.00010 * 3 2 1 29 29 H 1.09008 * 109.46953 * 197.28094 * 5 4 2 30 30 H 1.09008 * 109.46779 * 317.27176 * 5 4 2 31 31 H 0.97003 * 120.00238 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47003 * 53.95431 * 14 4 2 33 33 H 1.08998 * 109.46979 * 173.95586 * 14 4 2 34 34 H 1.09004 * 110.98791 * 273.99170 * 17 15 14 35 35 H 1.08993 * 110.99412 * 37.80203 * 17 15 14 36 36 H 1.09008 * 110.74158 * 206.05102 * 18 17 15 37 37 H 1.08996 * 110.61513 * 82.86176 * 18 17 15 38 38 H 1.08998 * 109.88614 * 262.80281 * 19 18 17 39 39 H 1.08995 * 110.02577 * 141.68993 * 19 18 17 40 40 H 1.09004 * 109.46760 * 299.15083 * 21 20 19 41 41 H 1.08994 * 109.47243 * 59.14839 * 21 20 19 42 42 H 1.08997 * 109.47306 * 179.15682 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.6614 0.0468 2.4173 6 6 0.2078 -0.1879 2.7379 7 1 -0.3863 -0.8349 2.1095 8 6 -0.3639 0.4235 3.8335 9 7 0.3595 1.2112 4.5990 10 14 -2.1660 0.1331 4.2307 11 1 -2.7532 -0.7859 3.2227 12 1 -2.2840 -0.4724 5.5814 13 1 -2.8937 1.4273 4.2032 14 6 3.4703 -0.9126 1.1249 15 6 3.7800 -1.8894 -0.0113 16 1 3.5013 -1.4545 -0.9712 17 6 5.2830 -2.2645 -0.0052 18 6 5.2644 -3.6394 -0.7260 19 6 3.9421 -4.2703 -0.2413 20 7 3.0684 -3.1678 0.2006 21 6 1.7908 -3.1857 -0.5243 22 1 -0.3633 0.6265 0.8146 23 1 -0.3633 0.3923 -0.9499 24 1 -0.3632 -1.0187 0.1352 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 2.2772 -0.2999 3.2472 30 1 1.8312 1.1119 2.2590 31 1 -0.0427 1.6410 5.3701 32 1 3.9725 0.0360 0.9355 33 1 3.8235 -1.3288 2.0683 34 1 5.8695 -1.5360 -0.5651 35 1 5.6565 -2.3637 1.0139 36 1 6.1162 -4.2472 -0.4202 37 1 5.2538 -3.5056 -1.8077 38 1 4.1370 -4.9457 0.5918 39 1 3.4675 -4.8154 -1.0571 40 1 1.9767 -3.0618 -1.5912 41 1 1.2882 -4.1372 -0.3512 42 1 1.1598 -2.3713 -0.1685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395281939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:25 Heat of formation + Delta-G solvation = 15.455534 kcal Electronic energy + Delta-G solvation = -18866.622511 eV Core-core repulsion = 16267.904550 eV Total energy + Delta-G solvation = -2598.717961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21459 -37.11755 -32.54900 -31.85844 -31.28632 -29.25804 -27.09116 -26.10194 -25.23909 -23.41082 -22.17578 -20.84626 -20.01893 -18.12141 -16.30951 -16.04590 -15.20571 -15.09941 -14.50218 -14.14728 -13.65199 -13.44655 -13.02463 -12.76854 -12.53602 -12.27239 -12.11562 -11.55053 -11.31299 -11.15408 -11.06733 -10.98654 -10.93572 -10.87810 -10.58132 -10.53873 -10.43986 -10.42855 -10.11641 -9.99370 -9.25910 -8.94204 -8.29146 -7.83166 -6.97708 -5.91751 -3.88229 3.36217 3.44243 3.48650 4.32085 4.50146 4.75375 4.83677 5.08555 5.18207 5.40757 5.42938 5.60055 5.66984 5.73562 5.80274 5.86536 5.89224 5.91656 5.98484 6.04604 6.06621 6.17812 6.19278 6.31753 6.39875 6.52266 6.58508 6.65737 6.70406 6.78382 7.00658 7.32944 7.45414 7.49590 7.55874 7.59434 7.97104 8.28311 8.38639 8.70932 9.17572 9.71847 11.18791 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.006815 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.864961 B = 4107.699350 C = 4224.189978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 C -0.187 4.187 4 N -0.517 5.517 5 C 0.185 3.815 6 C -0.490 4.490 7 H 0.071 0.929 8 C 0.050 3.950 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.287 1.287 14 C 0.070 3.930 15 C 0.079 3.921 16 H 0.047 0.953 17 C -0.126 4.126 18 C -0.141 4.141 19 C 0.038 3.962 20 N -0.507 5.507 21 C 0.019 3.981 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.005 0.995 31 H 0.258 0.742 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.007 0.993 41 H 0.055 0.945 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 -5.884 -11.243 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 C -0.246 4.246 4 N -0.241 5.241 5 C 0.060 3.940 6 C -0.529 4.529 7 H 0.089 0.911 8 C -0.150 4.150 9 N -0.543 5.543 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.214 1.214 14 C -0.059 4.059 15 C -0.029 4.029 16 H 0.065 0.935 17 C -0.165 4.165 18 C -0.179 4.179 19 C -0.090 4.090 20 N -0.230 5.230 21 C -0.129 4.129 22 H 0.109 0.891 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.825 -6.307 -10.526 14.041 hybrid contribution -0.349 0.768 -0.596 1.033 sum 6.476 -5.538 -11.122 14.011 Atomic orbital electron populations 1.22143 0.94497 1.02743 1.00613 1.21517 0.96257 0.91253 0.93321 1.22495 1.00021 0.99801 1.02287 1.62345 1.09795 1.48824 1.03099 1.19870 0.96705 0.91805 0.85662 1.21406 0.95056 1.26611 1.09827 0.91104 1.24985 0.97822 0.95809 0.96407 1.69975 1.35810 1.31714 1.16838 0.86556 0.85567 0.77734 0.78268 1.19670 1.21252 1.21383 1.22023 0.90772 0.95201 0.97905 1.22635 0.91667 0.90982 0.97644 0.93484 1.22757 0.96295 0.96194 1.01219 1.22773 0.98367 0.97096 0.99692 1.22879 0.92457 0.94945 0.98698 1.63315 1.03352 1.01212 1.55159 1.22734 0.92573 1.03813 0.93778 0.89059 0.95447 0.92635 0.92780 0.93918 0.93727 0.90655 0.95928 0.97771 0.93273 0.95805 0.90949 0.91352 0.90502 0.91178 0.92084 0.91000 0.93486 0.97439 0.92639 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 7.59 37.16 0.28 -2.48 16 2 C 0.09 1.60 1.65 -67.71 -0.11 1.49 16 3 C -0.19 -3.40 8.53 37.16 0.32 -3.08 16 4 N -0.52 -10.77 3.18 -228.08 -0.73 -11.50 16 5 C 0.18 4.68 4.52 -4.98 -0.02 4.65 16 6 C -0.49 -13.31 6.73 -34.45 -0.23 -13.55 16 7 H 0.07 1.91 5.79 -52.49 -0.30 1.60 16 8 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 9 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.07 1.28 4.55 -3.82 -0.02 1.27 16 15 C 0.08 1.23 2.33 -66.19 -0.15 1.07 16 16 H 0.05 0.74 6.25 -51.93 -0.32 0.41 16 17 C -0.13 -1.59 6.51 -24.53 -0.16 -1.75 16 18 C -0.14 -1.58 6.94 -24.84 -0.17 -1.75 16 19 C 0.04 0.50 6.90 -2.83 -0.02 0.48 16 20 N -0.51 -8.14 5.00 -231.60 -1.16 -9.30 16 21 C 0.02 0.30 8.45 60.06 0.51 0.81 16 22 H 0.09 2.04 5.79 -51.93 -0.30 1.74 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.09 6.46 -51.93 -0.34 0.76 16 25 H 0.05 0.94 5.45 -51.93 -0.28 0.66 16 26 H 0.04 0.73 6.56 -51.93 -0.34 0.39 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.58 5.98 -51.93 -0.31 1.27 16 29 H 0.02 0.63 7.71 -51.92 -0.40 0.23 16 30 H 0.00 0.12 5.35 -51.92 -0.28 -0.15 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.02 0.43 6.38 -51.93 -0.33 0.10 16 33 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.57 7.58 -51.93 -0.39 0.17 16 40 H 0.01 0.10 8.09 -51.93 -0.42 -0.32 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.85 4.04 -51.93 -0.21 1.64 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -28.65 305.00 -8.60 -37.25 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.15 Total: -0.16 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 0.12 Total: -11.53 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.15 Total: -46.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.65 -8.60 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395281939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.705 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds