Wall clock time and date at job start Mon Mar 30 2020 04:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46734 * 2 1 4 4 N 1.46890 * 109.47244 * 119.99577 * 2 1 3 5 5 C 1.46901 * 111.00406 * 294.39015 * 4 2 1 6 6 C 1.50691 * 109.47513 * 77.27444 * 5 4 2 7 7 H 1.08002 * 120.00297 * 0.94972 * 6 5 4 8 8 C 1.37872 * 120.00313 * 180.95874 * 6 5 4 9 9 N 1.31523 * 119.99978 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00554 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47658 * 119.99569 * 10 8 6 13 13 H 1.48498 * 109.47358 * 239.99860 * 10 8 6 14 14 C 1.46902 * 111.00150 * 170.42978 * 4 2 1 15 15 C 1.53003 * 109.46804 * 293.95788 * 14 4 2 16 16 H 1.09000 * 110.33359 * 64.29772 * 15 14 4 17 17 C 1.54913 * 110.36867 * 186.55320 * 15 14 4 18 18 C 1.55253 * 101.59629 * 155.82005 * 17 15 14 19 19 C 1.54324 * 103.08749 * 324.48372 * 18 17 15 20 20 N 1.47445 * 107.22746 * 22.20849 * 19 18 17 21 21 C 1.46899 * 110.99865 * 123.26299 * 20 19 18 22 22 H 1.08995 * 109.47242 * 307.56216 * 1 2 3 23 23 H 1.09002 * 109.46888 * 67.55908 * 1 2 3 24 24 H 1.08996 * 109.46679 * 187.55973 * 1 2 3 25 25 H 1.08995 * 109.47028 * 240.00540 * 2 1 3 26 26 H 1.08997 * 109.47001 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46961 * 299.99726 * 3 2 1 28 28 H 1.08991 * 109.47120 * 60.00010 * 3 2 1 29 29 H 1.09008 * 109.46953 * 197.28094 * 5 4 2 30 30 H 1.09008 * 109.46779 * 317.27176 * 5 4 2 31 31 H 0.97003 * 120.00238 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47003 * 53.95431 * 14 4 2 33 33 H 1.08998 * 109.46979 * 173.95586 * 14 4 2 34 34 H 1.09004 * 110.98791 * 273.99170 * 17 15 14 35 35 H 1.08993 * 110.99412 * 37.80203 * 17 15 14 36 36 H 1.09008 * 110.74158 * 206.05102 * 18 17 15 37 37 H 1.08996 * 110.61513 * 82.86176 * 18 17 15 38 38 H 1.08998 * 109.88614 * 262.80281 * 19 18 17 39 39 H 1.08995 * 110.02577 * 141.68993 * 19 18 17 40 40 H 1.09004 * 109.46760 * 299.15083 * 21 20 19 41 41 H 1.08994 * 109.47243 * 59.14839 * 21 20 19 42 42 H 1.08997 * 109.47306 * 179.15682 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 1.6614 0.0468 2.4173 6 6 0.2078 -0.1879 2.7379 7 1 -0.3863 -0.8349 2.1095 8 6 -0.3639 0.4235 3.8335 9 7 0.3595 1.2112 4.5990 10 14 -2.1660 0.1331 4.2307 11 1 -2.7532 -0.7859 3.2227 12 1 -2.2840 -0.4724 5.5814 13 1 -2.8937 1.4273 4.2032 14 6 3.4703 -0.9126 1.1249 15 6 3.7800 -1.8894 -0.0113 16 1 3.5013 -1.4545 -0.9712 17 6 5.2830 -2.2645 -0.0052 18 6 5.2644 -3.6394 -0.7260 19 6 3.9421 -4.2703 -0.2413 20 7 3.0684 -3.1678 0.2006 21 6 1.7908 -3.1857 -0.5243 22 1 -0.3633 0.6265 0.8146 23 1 -0.3633 0.3923 -0.9499 24 1 -0.3632 -1.0187 0.1352 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 2.2772 -0.2999 3.2472 30 1 1.8312 1.1119 2.2590 31 1 -0.0427 1.6410 5.3701 32 1 3.9725 0.0360 0.9355 33 1 3.8235 -1.3288 2.0683 34 1 5.8695 -1.5360 -0.5651 35 1 5.6565 -2.3637 1.0139 36 1 6.1162 -4.2472 -0.4202 37 1 5.2538 -3.5056 -1.8077 38 1 4.1370 -4.9457 0.5918 39 1 3.4675 -4.8154 -1.0571 40 1 1.9767 -3.0618 -1.5912 41 1 1.2882 -4.1372 -0.3512 42 1 1.1598 -2.3713 -0.1685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395281939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:24 Heat of formation + Delta-G solvation = -3.037002 kcal Electronic energy + Delta-G solvation = -18867.424408 eV Core-core repulsion = 16267.904550 eV Total energy + Delta-G solvation = -2599.519858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51165 -38.59859 -34.65901 -33.11004 -32.57569 -30.87013 -28.75041 -27.74822 -26.43421 -24.97150 -23.97639 -21.85993 -21.39008 -19.65634 -18.37535 -17.23096 -16.80454 -16.56160 -16.18407 -15.64018 -14.98988 -14.77620 -14.58559 -14.27247 -13.83804 -13.79330 -13.39040 -13.06968 -13.04627 -12.88170 -12.64175 -12.55766 -12.36002 -12.20336 -12.07661 -12.01532 -11.88755 -11.71443 -11.66404 -11.45953 -11.04179 -10.86201 -10.46308 -9.03014 -8.67354 -8.07513 -6.10948 1.41960 1.43782 1.55948 2.46547 3.15365 3.23882 3.40848 3.81728 3.91847 4.09784 4.17366 4.29378 4.39453 4.46832 4.55866 4.61581 4.65172 4.70002 4.76595 4.85712 4.92357 4.94421 5.01999 5.03302 5.05998 5.12330 5.15275 5.24233 5.28988 5.37497 5.39633 5.45560 5.65069 5.80814 5.84600 6.22765 6.30883 6.41029 6.60461 6.84760 7.02705 7.53566 9.02698 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029721 B = 0.006815 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.864961 B = 4107.699350 C = 4224.189978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 C -0.179 4.179 4 N -0.520 5.520 5 C 0.200 3.800 6 C -0.490 4.490 7 H 0.072 0.928 8 C -0.005 4.005 9 N -0.942 5.942 10 Si 0.956 3.044 11 H -0.262 1.262 12 H -0.286 1.286 13 H -0.283 1.283 14 C 0.071 3.929 15 C 0.085 3.915 16 H 0.052 0.948 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.036 3.964 20 N -0.535 5.535 21 C 0.024 3.976 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.038 0.962 29 H -0.015 1.015 30 H -0.014 1.014 31 H 0.258 0.742 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -6.919 -13.513 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 C -0.238 4.238 4 N -0.244 5.244 5 C 0.074 3.926 6 C -0.529 4.529 7 H 0.090 0.910 8 C -0.201 4.201 9 N -0.584 5.584 10 Si 0.782 3.218 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.209 1.209 14 C -0.058 4.058 15 C -0.024 4.024 16 H 0.070 0.930 17 C -0.162 4.162 18 C -0.168 4.168 19 C -0.091 4.091 20 N -0.260 5.260 21 C -0.125 4.125 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.043 -7.358 -12.821 16.374 hybrid contribution -0.377 1.071 0.082 1.138 sum 6.666 -6.287 -12.739 15.692 Atomic orbital electron populations 1.22015 0.94894 1.01638 1.00841 1.21585 0.95940 0.91665 0.92953 1.22388 1.00534 0.99167 1.01707 1.62266 1.11702 1.48158 1.02236 1.19508 0.95395 0.90970 0.86696 1.21675 0.95855 1.25849 1.09509 0.91015 1.25806 1.02125 0.95729 0.96463 1.70107 1.37727 1.33049 1.17514 0.85525 0.80482 0.77829 0.77981 1.18584 1.21212 1.20858 1.22061 0.89051 0.96251 0.98435 1.22527 0.93699 0.90181 0.95951 0.93001 1.22755 0.94203 0.97708 1.01503 1.22739 0.97882 0.95945 1.00256 1.22916 0.93052 0.94085 0.99075 1.63204 1.04169 1.02235 1.56349 1.22617 0.92270 1.03012 0.94575 0.92566 0.92375 0.93323 0.90306 0.93016 0.91110 0.94258 0.99688 0.99687 0.93300 0.95480 0.93221 0.89478 0.91265 0.89318 0.90685 0.91338 0.92288 0.95768 0.92302 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 7.59 71.99 0.55 -4.62 16 2 C 0.09 3.17 1.65 44.92 0.07 3.25 16 3 C -0.18 -6.36 8.53 71.98 0.61 -5.75 16 4 N -0.52 -21.96 3.18 -875.51 -2.79 -24.75 16 5 C 0.20 10.61 4.52 85.55 0.39 11.00 16 6 C -0.49 -27.35 6.73 25.60 0.17 -27.18 16 7 H 0.07 3.92 5.79 -2.91 -0.02 3.90 16 8 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 9 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 10 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 C 0.07 2.61 4.55 86.30 0.39 3.00 16 15 C 0.09 2.48 2.33 45.39 0.11 2.58 16 16 H 0.05 1.47 6.25 -2.39 -0.01 1.46 16 17 C -0.12 -2.79 6.51 32.02 0.21 -2.58 16 18 C -0.13 -2.46 6.94 31.82 0.22 -2.23 16 19 C 0.04 0.85 6.90 86.65 0.60 1.45 16 20 N -0.54 -16.36 5.00 -886.65 -4.43 -20.79 16 21 C 0.02 0.70 8.45 127.69 1.08 1.78 16 22 H 0.06 2.53 5.79 -2.39 -0.01 2.51 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 1.88 6.46 -2.39 -0.02 1.86 16 25 H 0.08 2.54 5.45 -2.39 -0.01 2.52 16 26 H 0.05 1.71 6.56 -2.39 -0.02 1.69 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.68 5.98 -2.39 -0.01 1.66 16 29 H -0.01 -0.89 7.71 -2.38 -0.02 -0.91 16 30 H -0.01 -0.81 5.35 -2.38 -0.01 -0.82 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.03 0.97 6.38 -2.39 -0.02 0.95 16 33 H 0.05 2.02 7.77 -2.39 -0.02 2.00 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.68 8.02 -2.39 -0.02 1.66 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 40 H 0.02 0.62 8.09 -2.39 -0.02 0.60 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.72 4.04 -2.39 -0.01 2.71 16 Total: -1.00 -63.28 305.00 0.93 -62.34 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.98 Total: 12.47 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.86 Total: -19.13 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -6.93 Total: -102.86 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.28 0.93 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395281939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.305 kcal (2) G-P(sol) polarization free energy of solvation -63.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds