Wall clock time and date at job start Mon Mar 30 2020 04:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47655 * 2 1 4 4 N 1.46904 * 109.47305 * 120.00293 * 2 1 3 5 5 C 1.46894 * 111.00327 * 74.61984 * 4 2 1 6 6 C 1.50704 * 109.47101 * 59.88192 * 5 4 2 7 7 H 1.07995 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00155 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47392 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47068 * 119.99775 * 10 8 6 13 13 H 1.48498 * 109.47367 * 239.99944 * 10 8 6 14 14 C 1.46903 * 110.99470 * 310.66624 * 4 2 1 15 15 C 1.53004 * 109.47123 * 202.14710 * 14 4 2 16 16 H 1.09001 * 109.87402 * 50.23975 * 15 14 4 17 17 C 1.54313 * 109.88826 * 289.03953 * 15 14 4 18 18 C 1.55139 * 103.01905 * 218.30917 * 17 15 14 19 19 C 1.54908 * 101.65251 * 35.65402 * 18 17 15 20 20 N 1.47450 * 109.88580 * 171.26988 * 15 14 4 21 21 C 1.46897 * 111.00035 * 356.15245 * 20 15 14 22 22 H 1.08998 * 109.47294 * 305.05652 * 1 2 3 23 23 H 1.09002 * 109.47205 * 65.05456 * 1 2 3 24 24 H 1.08999 * 109.47330 * 185.05561 * 1 2 3 25 25 H 1.09002 * 109.47411 * 239.99664 * 2 1 3 26 26 H 1.08998 * 109.47356 * 183.30906 * 3 2 1 27 27 H 1.09005 * 109.46790 * 303.30786 * 3 2 1 28 28 H 1.09003 * 109.47302 * 63.30183 * 3 2 1 29 29 H 1.09001 * 109.47440 * 179.88584 * 5 4 2 30 30 H 1.09000 * 109.47377 * 299.88375 * 5 4 2 31 31 H 0.96996 * 119.99779 * 180.02562 * 9 8 6 32 32 H 1.08993 * 109.47500 * 322.15169 * 14 4 2 33 33 H 1.09011 * 109.46962 * 82.15155 * 14 4 2 34 34 H 1.09000 * 110.71118 * 336.68973 * 17 15 14 35 35 H 1.09006 * 110.70360 * 99.93121 * 17 15 14 36 36 H 1.09008 * 110.99046 * 277.56681 * 18 17 15 37 37 H 1.09000 * 111.02739 * 153.76605 * 18 17 15 38 38 H 1.09003 * 110.37336 * 204.09795 * 19 18 17 39 39 H 1.09003 * 110.37330 * 81.76108 * 19 18 17 40 40 H 1.08994 * 109.47149 * 58.13526 * 21 20 15 41 41 H 1.09004 * 109.46661 * 178.14059 * 21 20 15 42 42 H 1.09002 * 109.47003 * 298.13409 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8523 -2.1465 1.0731 6 6 2.6265 -2.6393 -0.1223 7 1 3.1871 -1.9422 -0.7273 8 6 2.6191 -3.9801 -0.4435 9 7 1.9359 -4.8289 0.2931 10 14 3.5792 -4.5910 -1.9247 11 1 4.2585 -3.4453 -2.5812 12 1 4.5946 -5.5804 -1.4826 13 1 2.6486 -5.2332 -2.8874 14 6 1.3525 -0.1888 2.4074 15 6 2.2197 -0.4887 3.6317 16 1 3.2411 -0.1520 3.4538 17 6 2.2064 -2.0035 3.9261 18 6 2.1765 -2.0580 5.4762 19 6 1.2919 -0.8324 5.8154 20 7 1.6664 0.1916 4.8171 21 6 0.5100 1.0221 4.4554 22 1 -0.3634 0.5903 0.8412 23 1 -0.3634 0.4334 -0.9318 24 1 -0.3634 -1.0236 0.0906 25 1 1.8934 -0.5139 -0.8900 26 1 3.1284 1.4429 -0.0593 27 1 1.6291 1.9731 -0.8589 28 1 1.7259 1.9389 0.9181 29 1 2.2247 -2.6347 1.9737 30 1 0.7957 -2.3807 0.9434 31 1 1.9309 -5.7723 0.0674 32 1 1.2072 0.8879 2.3200 33 1 0.3848 -0.6781 2.5189 34 1 1.3148 -2.4698 3.5069 35 1 3.1086 -2.4789 3.5410 36 1 3.1783 -1.9429 5.8903 37 1 1.7153 -2.9815 5.8263 38 1 1.5067 -0.4766 6.8231 39 1 0.2366 -1.0880 5.7193 40 1 -0.2530 0.3992 3.9888 41 1 0.1013 1.4863 5.3530 42 1 0.8238 1.7972 3.7563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395281946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:28 Heat of formation + Delta-G solvation = 14.405141 kcal Electronic energy + Delta-G solvation = -18843.936442 eV Core-core repulsion = 16245.172932 eV Total energy + Delta-G solvation = -2598.763510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46647 -37.05650 -32.84473 -31.88348 -31.43700 -29.04250 -26.67332 -26.56261 -25.37977 -23.92809 -22.19265 -20.68721 -19.64797 -18.43312 -16.15128 -15.96415 -15.62924 -15.12922 -14.49288 -13.97426 -13.69039 -13.37976 -13.18440 -12.91934 -12.52751 -12.33237 -12.17122 -12.01694 -11.50157 -11.40928 -11.13877 -11.05343 -10.92703 -10.84604 -10.67144 -10.60648 -10.33881 -10.20534 -10.16701 -9.88657 -9.50139 -9.00655 -8.39401 -8.03388 -7.13019 -6.02126 -4.01640 3.30488 3.38402 3.42909 4.23318 4.44520 4.92945 5.05165 5.08332 5.33582 5.35420 5.52547 5.56923 5.61817 5.63726 5.77051 5.84272 5.87664 5.92127 6.01367 6.03392 6.08084 6.19177 6.20787 6.28000 6.30183 6.37956 6.49109 6.55835 6.65609 6.80178 6.87749 6.95741 7.27773 7.29655 7.44103 7.47078 7.82822 8.14834 8.28261 8.61388 9.06073 9.61744 11.08750 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.008136 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.601712 B = 3440.580986 C = 4330.010595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 C -0.139 4.139 4 N -0.527 5.527 5 C 0.175 3.825 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.041 3.959 15 C 0.080 3.920 16 H 0.091 0.909 17 C -0.130 4.130 18 C -0.134 4.134 19 C 0.041 3.959 20 N -0.530 5.530 21 C 0.017 3.983 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.053 0.947 30 H -0.012 1.012 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 9.040 6.794 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 C -0.197 4.197 4 N -0.251 5.251 5 C 0.050 3.950 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.089 4.089 15 C -0.028 4.028 16 H 0.109 0.891 17 C -0.168 4.168 18 C -0.172 4.172 19 C -0.087 4.087 20 N -0.255 5.255 21 C -0.132 4.132 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.794 9.290 7.062 11.806 hybrid contribution -1.162 -1.220 -1.258 2.103 sum -2.956 8.070 5.804 10.371 Atomic orbital electron populations 1.22419 0.98994 1.01802 1.00369 1.21633 0.91525 0.93980 0.95909 1.21848 1.01465 0.96304 1.00045 1.62231 1.55234 1.07877 0.99749 1.20165 0.95074 0.81030 0.98738 1.21248 1.29399 0.92548 1.11228 0.91934 1.24958 0.95793 0.96888 0.96918 1.69964 1.41857 1.02910 1.39060 0.86513 0.79785 0.78827 0.82739 1.19704 1.21061 1.21235 1.22663 0.94912 0.99408 0.91877 1.22403 0.99646 0.92883 0.87917 0.89075 1.23025 1.03719 0.96156 0.93906 1.22760 1.00001 0.97179 0.97244 1.23036 0.97674 0.91594 0.96362 1.63826 1.29275 1.21393 1.10965 1.22530 0.92457 0.97680 1.00492 0.93864 0.93387 0.92279 0.88666 0.92380 0.93516 0.93638 0.92918 0.99466 0.93111 0.91291 0.95775 0.90887 0.89782 0.91079 0.91280 0.90858 0.94064 0.95176 0.92323 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.40 37.16 0.31 -2.82 16 2 C 0.08 1.51 2.70 -67.72 -0.18 1.33 16 3 C -0.14 -2.21 9.29 37.15 0.34 -1.87 16 4 N -0.53 -11.03 4.37 -228.08 -1.00 -12.03 16 5 C 0.17 4.37 3.91 -4.98 -0.02 4.35 16 6 C -0.51 -13.87 8.27 -34.44 -0.28 -14.16 16 7 H 0.06 1.72 6.79 -52.49 -0.36 1.36 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.04 0.73 1.87 -3.82 -0.01 0.73 16 15 C 0.08 1.37 3.65 -66.72 -0.24 1.13 16 16 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 17 C -0.13 -2.33 4.48 -24.91 -0.11 -2.44 16 18 C -0.13 -1.94 7.08 -24.59 -0.17 -2.12 16 19 C 0.04 0.57 6.73 -2.30 -0.02 0.55 16 20 N -0.53 -8.05 5.44 -231.56 -1.26 -9.31 16 21 C 0.02 0.23 8.22 60.06 0.49 0.72 16 22 H 0.04 0.70 6.89 -51.93 -0.36 0.34 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.19 6.72 -51.93 -0.35 0.84 16 25 H 0.10 2.07 6.12 -51.93 -0.32 1.75 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.68 6.38 -51.93 -0.33 0.35 16 29 H 0.05 1.37 4.05 -51.93 -0.21 1.16 16 30 H -0.01 -0.34 6.74 -51.93 -0.35 -0.69 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.14 3.72 -51.93 -0.19 0.95 16 33 H 0.02 0.46 6.41 -51.92 -0.33 0.13 16 34 H 0.07 1.46 6.57 -51.93 -0.34 1.12 16 35 H 0.08 1.66 7.34 -51.93 -0.38 1.28 16 36 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 40 H 0.03 0.42 6.63 -51.93 -0.34 0.07 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.90 6.68 -51.93 -0.35 0.56 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -28.36 306.33 -9.05 -37.41 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.14 Total: 1.45 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 0.01 Total: -13.15 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -1.52 Total: -46.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.36 -9.05 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395281946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.813 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds