Wall clock time and date at job start Mon Mar 30 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47655 * 2 1 4 4 N 1.46904 * 109.47305 * 120.00293 * 2 1 3 5 5 C 1.46894 * 111.00327 * 74.61984 * 4 2 1 6 6 C 1.50704 * 109.47101 * 59.88192 * 5 4 2 7 7 H 1.07995 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00155 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47392 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47068 * 119.99775 * 10 8 6 13 13 H 1.48498 * 109.47367 * 239.99944 * 10 8 6 14 14 C 1.46903 * 110.99470 * 310.66624 * 4 2 1 15 15 C 1.53004 * 109.47123 * 202.14710 * 14 4 2 16 16 H 1.09001 * 109.87402 * 50.23975 * 15 14 4 17 17 C 1.54313 * 109.88826 * 289.03953 * 15 14 4 18 18 C 1.55139 * 103.01905 * 218.30917 * 17 15 14 19 19 C 1.54908 * 101.65251 * 35.65402 * 18 17 15 20 20 N 1.47450 * 109.88580 * 171.26988 * 15 14 4 21 21 C 1.46897 * 111.00035 * 356.15245 * 20 15 14 22 22 H 1.08998 * 109.47294 * 305.05652 * 1 2 3 23 23 H 1.09002 * 109.47205 * 65.05456 * 1 2 3 24 24 H 1.08999 * 109.47330 * 185.05561 * 1 2 3 25 25 H 1.09002 * 109.47411 * 239.99664 * 2 1 3 26 26 H 1.08998 * 109.47356 * 183.30906 * 3 2 1 27 27 H 1.09005 * 109.46790 * 303.30786 * 3 2 1 28 28 H 1.09003 * 109.47302 * 63.30183 * 3 2 1 29 29 H 1.09001 * 109.47440 * 179.88584 * 5 4 2 30 30 H 1.09000 * 109.47377 * 299.88375 * 5 4 2 31 31 H 0.96996 * 119.99779 * 180.02562 * 9 8 6 32 32 H 1.08993 * 109.47500 * 322.15169 * 14 4 2 33 33 H 1.09011 * 109.46962 * 82.15155 * 14 4 2 34 34 H 1.09000 * 110.71118 * 336.68973 * 17 15 14 35 35 H 1.09006 * 110.70360 * 99.93121 * 17 15 14 36 36 H 1.09008 * 110.99046 * 277.56681 * 18 17 15 37 37 H 1.09000 * 111.02739 * 153.76605 * 18 17 15 38 38 H 1.09003 * 110.37336 * 204.09795 * 19 18 17 39 39 H 1.09003 * 110.37330 * 81.76108 * 19 18 17 40 40 H 1.08994 * 109.47149 * 58.13526 * 21 20 15 41 41 H 1.09004 * 109.46661 * 178.14059 * 21 20 15 42 42 H 1.09002 * 109.47003 * 298.13409 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8523 -2.1465 1.0731 6 6 2.6265 -2.6393 -0.1223 7 1 3.1871 -1.9422 -0.7273 8 6 2.6191 -3.9801 -0.4435 9 7 1.9359 -4.8289 0.2931 10 14 3.5792 -4.5910 -1.9247 11 1 4.2585 -3.4453 -2.5812 12 1 4.5946 -5.5804 -1.4826 13 1 2.6486 -5.2332 -2.8874 14 6 1.3525 -0.1888 2.4074 15 6 2.2197 -0.4887 3.6317 16 1 3.2411 -0.1520 3.4538 17 6 2.2064 -2.0035 3.9261 18 6 2.1765 -2.0580 5.4762 19 6 1.2919 -0.8324 5.8154 20 7 1.6664 0.1916 4.8171 21 6 0.5100 1.0221 4.4554 22 1 -0.3634 0.5903 0.8412 23 1 -0.3634 0.4334 -0.9318 24 1 -0.3634 -1.0236 0.0906 25 1 1.8934 -0.5139 -0.8900 26 1 3.1284 1.4429 -0.0593 27 1 1.6291 1.9731 -0.8589 28 1 1.7259 1.9389 0.9181 29 1 2.2247 -2.6347 1.9737 30 1 0.7957 -2.3807 0.9434 31 1 1.9309 -5.7723 0.0674 32 1 1.2072 0.8879 2.3200 33 1 0.3848 -0.6781 2.5189 34 1 1.3148 -2.4698 3.5069 35 1 3.1086 -2.4789 3.5410 36 1 3.1783 -1.9429 5.8903 37 1 1.7153 -2.9815 5.8263 38 1 1.5067 -0.4766 6.8231 39 1 0.2366 -1.0880 5.7193 40 1 -0.2530 0.3992 3.9888 41 1 0.1013 1.4863 5.3530 42 1 0.8238 1.7972 3.7563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395281946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:27 Heat of formation + Delta-G solvation = -4.965695 kcal Electronic energy + Delta-G solvation = -18844.776425 eV Core-core repulsion = 16245.172932 eV Total energy + Delta-G solvation = -2599.603492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85978 -38.57245 -34.89719 -33.21513 -32.89836 -30.69779 -28.40468 -27.99497 -26.54212 -25.63786 -23.91935 -22.04610 -21.10447 -19.94369 -18.24543 -17.37165 -17.16737 -16.51812 -16.22625 -15.55308 -15.10017 -14.90344 -14.61580 -14.31968 -14.17491 -13.78601 -13.59792 -13.51190 -13.17842 -12.79924 -12.73812 -12.54915 -12.43406 -12.23418 -12.19098 -12.14253 -12.01931 -11.77342 -11.66786 -11.50729 -11.07225 -10.99501 -10.52157 -9.30835 -8.84125 -8.18222 -6.25117 1.38313 1.39674 1.52235 2.40343 2.97699 3.15099 3.44169 3.74058 3.81199 4.00345 4.12352 4.27716 4.34238 4.39501 4.41049 4.55437 4.56900 4.62369 4.68707 4.70878 4.80437 4.83462 4.97231 4.97608 5.03141 5.06528 5.09159 5.13605 5.21602 5.26455 5.32868 5.45299 5.51953 5.57109 5.69574 6.00665 6.12014 6.16332 6.45421 6.76151 6.92515 7.42955 8.92828 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.008136 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.601712 B = 3440.580986 C = 4330.010595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 C -0.127 4.127 4 N -0.533 5.533 5 C 0.193 3.807 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.051 3.949 15 C 0.085 3.915 16 H 0.079 0.921 17 C -0.130 4.130 18 C -0.126 4.126 19 C 0.043 3.957 20 N -0.532 5.532 21 C 0.015 3.985 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.023 0.977 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.040 0.960 30 H -0.047 1.047 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.010 0.990 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.021 0.979 41 H 0.083 0.917 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 10.896 7.218 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.038 4.038 3 C -0.185 4.185 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.207 1.207 14 C -0.078 4.078 15 C -0.023 4.023 16 H 0.097 0.903 17 C -0.168 4.168 18 C -0.164 4.164 19 C -0.084 4.084 20 N -0.256 5.256 21 C -0.133 4.133 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.057 0.943 30 H -0.030 1.030 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.102 0.898 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.681 11.171 7.491 13.555 hybrid contribution -1.230 -1.771 -1.362 2.550 sum -2.911 9.400 6.128 11.593 Atomic orbital electron populations 1.22306 0.97811 1.00096 1.02382 1.21715 0.92577 0.95632 0.93857 1.21744 1.01114 0.93726 1.01914 1.62188 1.56202 1.05622 1.01697 1.19802 0.92370 0.83811 0.97363 1.21556 1.29385 0.92864 1.11913 0.92283 1.25809 0.96765 0.97115 0.99803 1.70090 1.43224 1.03213 1.40788 0.85457 0.78402 0.78340 0.79186 1.18874 1.20520 1.20691 1.22659 0.94059 1.00191 0.90920 1.22244 0.99039 0.92326 0.88717 0.90305 1.22851 1.00819 0.96477 0.96669 1.22749 1.01119 0.98428 0.94140 1.23120 0.97521 0.90701 0.97090 1.63866 1.30428 1.21456 1.09857 1.22611 0.91490 0.97325 1.01881 0.92022 0.91101 0.95809 0.91742 0.92928 0.90985 0.92251 0.94260 1.02975 0.92976 0.89049 0.97188 0.93871 0.92573 0.90023 0.90335 0.88261 0.93802 0.96088 0.89828 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.85 8.40 71.98 0.60 -5.25 16 2 C 0.07 2.72 2.70 44.91 0.12 2.84 16 3 C -0.13 -3.77 9.29 71.98 0.67 -3.10 16 4 N -0.53 -22.83 4.37 -875.51 -3.83 -26.66 16 5 C 0.19 10.15 3.91 85.56 0.33 10.48 16 6 C -0.52 -29.47 8.27 25.60 0.21 -29.26 16 7 H 0.06 3.32 6.79 -2.91 -0.02 3.30 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 10 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 11 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 C 0.05 1.82 1.87 86.30 0.16 1.98 16 15 C 0.09 2.94 3.65 45.26 0.17 3.11 16 16 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 17 C -0.13 -4.83 4.48 31.77 0.14 -4.69 16 18 C -0.13 -3.58 7.08 31.98 0.23 -3.35 16 19 C 0.04 1.09 6.73 86.77 0.58 1.67 16 20 N -0.53 -15.12 5.44 -886.53 -4.83 -19.95 16 21 C 0.02 0.36 8.22 127.69 1.05 1.41 16 22 H 0.06 1.90 6.89 -2.39 -0.02 1.88 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.02 0.97 6.72 -2.39 -0.02 0.96 16 25 H 0.06 2.86 6.12 -2.39 -0.01 2.84 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.06 1.59 6.38 -2.39 -0.02 1.57 16 29 H 0.04 2.18 4.05 -2.39 -0.01 2.17 16 30 H -0.05 -2.78 6.74 -2.39 -0.02 -2.80 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.09 2.86 3.72 -2.39 -0.01 2.85 16 33 H 0.01 0.39 6.41 -2.38 -0.02 0.38 16 34 H 0.04 1.84 6.57 -2.39 -0.02 1.82 16 35 H 0.06 2.36 7.34 -2.38 -0.02 2.34 16 36 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.10 7.80 -2.39 -0.02 1.08 16 40 H 0.02 0.54 6.63 -2.39 -0.02 0.53 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 1.72 6.68 -2.39 -0.02 1.70 16 Total: -1.00 -63.02 306.33 -0.64 -63.66 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.98 Total: 15.57 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 4.73 Total: -23.53 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -8.37 Total: -102.57 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.02 -0.64 -63.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395281946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.690 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds