Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46894 * 109.47029 * 119.99717 * 2 1 3 5 5 C 1.47968 * 110.99773 * 68.53255 * 4 2 1 6 6 C 1.53941 * 86.17767 * 137.58225 * 5 4 2 7 7 N 1.46903 * 113.73212 * 221.81540 * 6 5 4 8 8 C 1.46899 * 111.00152 * 203.10202 * 7 6 5 9 9 C 1.52993 * 109.47066 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47184 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47326 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47453 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99442 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00448 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99782 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46578 * 90.00683 * 16 14 12 18 18 H 1.48504 * 109.47263 * 210.00150 * 16 14 12 19 19 H 1.48496 * 109.47417 * 330.00773 * 16 14 12 20 20 C 1.48308 * 111.00391 * 167.88159 * 4 2 1 21 21 H 1.09003 * 109.47037 * 300.00355 * 1 2 3 22 22 H 1.08998 * 109.46990 * 59.99980 * 1 2 3 23 23 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46930 * 240.00081 * 2 1 3 25 25 H 1.09004 * 109.47109 * 65.29313 * 3 2 1 26 26 H 1.09000 * 109.47036 * 185.29445 * 3 2 1 27 27 H 1.09005 * 109.47055 * 305.29253 * 3 2 1 28 28 H 1.08991 * 113.75740 * 23.26780 * 5 4 2 29 29 H 1.08996 * 113.75779 * 251.89735 * 5 4 2 30 30 H 1.09000 * 113.73598 * 90.63912 * 6 5 4 31 31 H 1.00905 * 111.00085 * 327.05834 * 7 6 5 32 32 H 1.08998 * 109.47075 * 299.99765 * 8 7 6 33 33 H 1.09001 * 109.47215 * 59.99978 * 8 7 6 34 34 H 1.09006 * 109.47667 * 300.00140 * 9 8 7 35 35 H 1.09000 * 109.47535 * 60.00038 * 9 8 7 36 36 H 1.09002 * 109.46532 * 300.00142 * 10 9 8 37 37 H 1.08993 * 109.47286 * 59.99359 * 10 9 8 38 38 H 1.09006 * 109.47304 * 299.99909 * 11 10 9 39 39 H 1.09000 * 109.47757 * 59.99721 * 11 10 9 40 40 H 0.97001 * 119.99876 * 179.97438 * 15 14 12 41 41 H 1.09001 * 113.85649 * 108.14695 * 20 4 2 42 42 H 1.08992 * 113.75906 * 336.68570 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.7197 -2.1400 1.1356 6 6 3.1427 -2.3540 1.6826 7 7 3.8652 -3.4571 1.0352 8 6 4.9322 -3.9698 1.9051 9 6 5.6600 -5.1152 1.1985 10 6 6.7709 -5.6496 2.1048 11 6 7.4991 -6.7945 1.3980 12 6 8.5937 -7.3205 2.2903 13 1 8.7542 -6.8817 3.2640 14 6 9.3903 -8.3619 1.8637 15 7 9.1952 -8.8959 0.6777 16 14 10.7476 -9.0133 2.9695 17 1 10.2098 -10.1025 3.8239 18 1 11.8562 -9.5411 2.1342 19 1 11.2555 -7.9145 3.8296 20 6 3.4731 -0.9691 1.0974 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.7561 1.9282 0.9336 26 1 3.1259 1.4439 -0.0948 27 1 1.6013 1.9830 -0.8388 28 1 1.5780 -2.5147 0.1220 29 1 0.9336 -2.4562 1.8211 30 1 3.1930 -2.3939 2.7707 31 1 3.2322 -4.1953 0.7659 32 1 5.6392 -3.1694 2.1232 33 1 4.4982 -4.3350 2.8359 34 1 4.9528 -5.9156 0.9806 35 1 6.0940 -4.7505 0.2675 36 1 7.4782 -4.8494 2.3230 37 1 6.3366 -6.0143 3.0355 38 1 6.7921 -7.5949 1.1794 39 1 7.9336 -6.4294 0.4674 40 1 9.7558 -9.6283 0.3774 41 1 4.0867 -0.3506 1.7525 42 1 3.8429 -1.0022 0.0727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395464340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = 5.719778 kcal Electronic energy + Delta-G solvation = -16771.276113 eV Core-core repulsion = 14172.135977 eV Total energy + Delta-G solvation = -2599.140135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30868 -36.35270 -34.52520 -33.18679 -31.65092 -28.34638 -27.96888 -25.91484 -25.70381 -23.98595 -21.43299 -20.64586 -20.13696 -19.62030 -16.51888 -16.22802 -16.11335 -15.55270 -14.82727 -14.59642 -14.43544 -13.91574 -13.53671 -13.00893 -12.93526 -12.51922 -12.43758 -12.24032 -12.16946 -11.71557 -11.69603 -11.33292 -11.24312 -10.99859 -10.85488 -10.68703 -10.51769 -10.44932 -10.38622 -9.61511 -9.25869 -9.07602 -8.94330 -8.45440 -8.31273 -5.96566 -3.98715 3.33626 3.39643 3.43332 3.63164 4.16149 4.30107 4.48858 4.62490 4.68988 4.86718 4.99210 5.14096 5.28350 5.35508 5.37091 5.38943 5.44691 5.50493 5.52441 5.57197 5.62265 5.71458 5.79130 5.83664 5.91906 5.98379 6.16880 6.17557 6.28451 6.52648 6.83765 6.86060 6.97720 7.05281 7.24177 7.36632 7.72540 7.88453 8.04674 8.47560 9.08877 9.65085 11.14834 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072448 B = 0.002856 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.392712 B = 9801.169158 C = 9861.027830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 C -0.142 4.142 4 N -0.477 5.477 5 C 0.000 4.000 6 C 0.054 3.946 7 N -0.681 5.681 8 C 0.059 3.941 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.015 3.985 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.341 0.659 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.084 0.916 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 17.074 -0.911 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 C -0.200 4.200 4 N -0.201 5.201 5 C -0.129 4.129 6 C -0.057 4.057 7 N -0.313 5.313 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.114 4.114 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.513 17.775 -0.857 24.277 hybrid contribution 0.537 -1.359 0.430 1.523 sum -15.976 16.416 -0.427 22.911 Atomic orbital electron populations 1.21789 0.94310 1.01898 1.02057 1.22167 0.96075 0.96092 0.92313 1.21765 1.01015 0.95060 1.02135 1.68636 1.06742 1.09426 1.35278 1.24163 0.97507 0.90125 1.01154 1.23438 0.92364 0.92176 0.97677 1.60690 1.14961 1.12727 1.42914 1.22132 0.93262 0.97814 0.93747 1.21644 0.98109 0.95859 0.99770 1.21587 0.95804 0.99424 0.97882 1.19092 0.94661 0.92201 0.95665 1.21295 1.15657 1.16575 1.02284 0.92771 1.25039 0.97642 0.96762 0.95134 1.69972 1.39831 1.25300 1.18509 0.86607 0.81767 0.79147 0.80552 1.20704 1.21230 1.19897 1.24108 0.90373 0.95515 1.01434 0.91934 0.92321 0.92785 0.93402 0.91872 0.92691 0.92333 0.90631 0.89633 0.90265 0.83983 0.91218 0.95396 0.92773 0.91703 0.93437 0.93672 0.96758 0.96618 0.93056 0.89757 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.23 37.16 0.34 -0.74 16 2 C 0.04 0.37 2.26 -67.72 -0.15 0.22 16 3 C -0.14 -1.13 9.21 37.16 0.34 -0.79 16 4 N -0.48 -4.74 5.98 -230.10 -1.38 -6.12 16 5 C 0.00 0.00 6.60 -2.75 -0.02 -0.02 16 6 C 0.05 0.58 4.30 -69.39 -0.30 0.28 16 7 N -0.68 -8.31 6.56 -107.96 -0.71 -9.02 16 8 C 0.06 0.83 5.54 -3.83 -0.02 0.81 16 9 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.02 0.16 7.09 -2.57 -0.02 0.14 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.41 7.47 -51.93 -0.39 0.02 16 24 H 0.05 0.44 7.69 -51.93 -0.40 0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.45 7.74 -51.93 -0.40 0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 31 H 0.34 3.86 8.57 -39.29 -0.34 3.53 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.39 8.13 -51.93 -0.42 -0.04 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.87 7.76 -51.93 -0.40 0.46 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -30.14 336.05 -10.17 -40.31 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.20 Total: -2.40 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.66 Total: -18.06 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -1.35 Total: -41.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.14 -10.17 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395464340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.025 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds