Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46894 * 109.47029 * 119.99717 * 2 1 3 5 5 C 1.47968 * 110.99773 * 68.53255 * 4 2 1 6 6 C 1.53941 * 86.17767 * 137.58225 * 5 4 2 7 7 N 1.46903 * 113.73212 * 221.81540 * 6 5 4 8 8 C 1.46899 * 111.00152 * 203.10202 * 7 6 5 9 9 C 1.52993 * 109.47066 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47184 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47326 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47453 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99442 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00448 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99782 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46578 * 90.00683 * 16 14 12 18 18 H 1.48504 * 109.47263 * 210.00150 * 16 14 12 19 19 H 1.48496 * 109.47417 * 330.00773 * 16 14 12 20 20 C 1.48308 * 111.00391 * 167.88159 * 4 2 1 21 21 H 1.09003 * 109.47037 * 300.00355 * 1 2 3 22 22 H 1.08998 * 109.46990 * 59.99980 * 1 2 3 23 23 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46930 * 240.00081 * 2 1 3 25 25 H 1.09004 * 109.47109 * 65.29313 * 3 2 1 26 26 H 1.09000 * 109.47036 * 185.29445 * 3 2 1 27 27 H 1.09005 * 109.47055 * 305.29253 * 3 2 1 28 28 H 1.08991 * 113.75740 * 23.26780 * 5 4 2 29 29 H 1.08996 * 113.75779 * 251.89735 * 5 4 2 30 30 H 1.09000 * 113.73598 * 90.63912 * 6 5 4 31 31 H 1.00905 * 111.00085 * 327.05834 * 7 6 5 32 32 H 1.08998 * 109.47075 * 299.99765 * 8 7 6 33 33 H 1.09001 * 109.47215 * 59.99978 * 8 7 6 34 34 H 1.09006 * 109.47667 * 300.00140 * 9 8 7 35 35 H 1.09000 * 109.47535 * 60.00038 * 9 8 7 36 36 H 1.09002 * 109.46532 * 300.00142 * 10 9 8 37 37 H 1.08993 * 109.47286 * 59.99359 * 10 9 8 38 38 H 1.09006 * 109.47304 * 299.99909 * 11 10 9 39 39 H 1.09000 * 109.47757 * 59.99721 * 11 10 9 40 40 H 0.97001 * 119.99876 * 179.97438 * 15 14 12 41 41 H 1.09001 * 113.85649 * 108.14695 * 20 4 2 42 42 H 1.08992 * 113.75906 * 336.68570 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.7197 -2.1400 1.1356 6 6 3.1427 -2.3540 1.6826 7 7 3.8652 -3.4571 1.0352 8 6 4.9322 -3.9698 1.9051 9 6 5.6600 -5.1152 1.1985 10 6 6.7709 -5.6496 2.1048 11 6 7.4991 -6.7945 1.3980 12 6 8.5937 -7.3205 2.2903 13 1 8.7542 -6.8817 3.2640 14 6 9.3903 -8.3619 1.8637 15 7 9.1952 -8.8959 0.6777 16 14 10.7476 -9.0133 2.9695 17 1 10.2098 -10.1025 3.8239 18 1 11.8562 -9.5411 2.1342 19 1 11.2555 -7.9145 3.8296 20 6 3.4731 -0.9691 1.0974 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.7561 1.9282 0.9336 26 1 3.1259 1.4439 -0.0948 27 1 1.6013 1.9830 -0.8388 28 1 1.5780 -2.5147 0.1220 29 1 0.9336 -2.4562 1.8211 30 1 3.1930 -2.3939 2.7707 31 1 3.2322 -4.1953 0.7659 32 1 5.6392 -3.1694 2.1232 33 1 4.4982 -4.3350 2.8359 34 1 4.9528 -5.9156 0.9806 35 1 6.0940 -4.7505 0.2675 36 1 7.4782 -4.8494 2.3230 37 1 6.3366 -6.0143 3.0355 38 1 6.7921 -7.5949 1.1794 39 1 7.9336 -6.4294 0.4674 40 1 9.7558 -9.6283 0.3774 41 1 4.0867 -0.3506 1.7525 42 1 3.8429 -1.0022 0.0727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395464340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -14.717289 kcal Electronic energy + Delta-G solvation = -16772.162330 eV Core-core repulsion = 14172.135977 eV Total energy + Delta-G solvation = -2600.026353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09897 -37.56783 -35.91107 -34.66512 -33.24346 -29.96711 -28.62831 -27.15745 -26.44499 -25.56287 -22.95044 -21.90467 -21.19230 -20.60573 -18.43341 -17.27886 -17.07448 -16.67415 -16.45076 -15.89604 -15.43569 -14.91129 -14.65829 -14.37310 -14.13941 -13.73650 -13.56903 -13.28101 -13.10708 -13.07523 -12.84734 -12.80930 -12.40687 -12.28517 -12.12079 -12.03923 -12.00023 -11.60080 -11.47678 -11.36378 -11.28235 -10.93450 -10.55447 -9.81336 -9.43096 -8.20093 -6.31563 1.39470 1.41216 1.52457 2.40855 2.84566 3.12617 3.23173 3.49569 3.94273 4.00006 4.07289 4.13867 4.21378 4.27412 4.44333 4.51904 4.55778 4.61385 4.68898 4.78246 4.79855 4.82792 4.91091 4.92718 4.94395 5.02505 5.08390 5.14002 5.25057 5.28517 5.34501 5.36847 5.48678 5.55431 5.78311 5.87108 6.08127 6.12701 6.25911 6.42197 6.86182 7.37800 8.91855 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.072448 B = 0.002856 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.392712 B = 9801.169158 C = 9861.027830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.039 3.961 3 C -0.139 4.139 4 N -0.483 5.483 5 C 0.008 3.992 6 C 0.054 3.946 7 N -0.684 5.684 8 C 0.072 3.928 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.016 3.984 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.347 0.653 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.051 0.949 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.084 0.916 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 17.769 0.040 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.197 4.197 4 N -0.207 5.207 5 C -0.121 4.121 6 C -0.057 4.057 7 N -0.317 5.317 8 C -0.057 4.057 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.113 4.113 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.018 18.485 0.098 25.126 hybrid contribution 0.661 -1.564 0.086 1.700 sum -16.358 16.921 0.185 23.535 Atomic orbital electron populations 1.21762 0.93290 1.02069 1.02528 1.22237 0.96901 0.96280 0.91557 1.21746 1.00715 0.94711 1.02509 1.68652 1.06260 1.09820 1.36006 1.24140 0.96805 0.89759 1.01425 1.23459 0.93164 0.91522 0.97549 1.60626 1.15114 1.13219 1.42701 1.21885 0.93628 0.96460 0.93738 1.21466 0.97117 0.96995 0.98759 1.21396 0.96555 0.97442 0.98130 1.19024 0.94183 0.93357 0.94888 1.21754 1.16557 1.17095 1.02879 0.92206 1.26030 1.00382 0.96997 0.96690 1.70107 1.41110 1.25882 1.20437 0.85429 0.78251 0.78741 0.78517 1.19657 1.20682 1.18715 1.24058 0.90903 0.95422 1.00958 0.92226 0.91087 0.92763 0.93933 0.92237 0.93254 0.91003 0.90341 0.88692 0.90364 0.83327 0.91305 0.94681 0.92709 0.92725 0.93175 0.93072 0.99176 0.99294 0.92765 0.89789 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.23 71.98 0.66 -1.20 16 2 C 0.04 0.63 2.26 44.92 0.10 0.73 16 3 C -0.14 -2.03 9.21 71.98 0.66 -1.37 16 4 N -0.48 -8.95 5.98 -881.92 -5.27 -14.22 16 5 C 0.01 0.13 6.60 86.41 0.57 0.70 16 6 C 0.05 1.07 4.30 46.48 0.20 1.27 16 7 N -0.68 -15.77 6.56 -495.47 -3.25 -19.02 16 8 C 0.07 1.93 5.54 86.30 0.48 2.40 16 9 C -0.11 -3.56 5.47 30.59 0.17 -3.39 16 10 C -0.10 -4.03 5.15 30.59 0.16 -3.88 16 11 C 0.02 1.23 4.97 29.85 0.15 1.37 16 12 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 16 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 C 0.02 0.32 7.09 86.34 0.61 0.93 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.72 7.47 -2.39 -0.02 0.70 16 24 H 0.04 0.74 7.69 -2.39 -0.02 0.72 16 25 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.05 0.76 7.74 -2.39 -0.02 0.75 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.08 1.30 7.82 -2.39 -0.02 1.29 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.62 7.88 -2.39 -0.02 1.60 16 31 H 0.35 7.34 8.57 -89.69 -0.77 6.57 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.52 7.76 -2.39 -0.02 1.50 16 Total: -1.00 -64.11 336.05 -1.58 -65.69 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.18 Total: 12.17 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 4.46 Total: -33.73 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -8.24 Total: -91.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.11 -1.58 -65.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395464340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.971 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds