Wall clock time and date at job start Mon Mar 30 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47341 * 2 1 4 4 H 1.08994 * 109.46929 * 177.95404 * 3 2 1 5 5 C 1.50700 * 109.46918 * 57.95081 * 3 2 1 6 6 H 1.07998 * 120.00305 * 240.00222 * 5 3 2 7 7 C 1.37877 * 119.99756 * 60.00195 * 5 3 2 8 8 N 1.31516 * 120.00410 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46863 * 89.99744 * 9 7 5 11 11 H 1.48491 * 109.47269 * 209.99956 * 9 7 5 12 12 H 1.48503 * 109.47047 * 330.00320 * 9 7 5 13 13 N 1.46900 * 109.46894 * 297.95423 * 3 2 1 14 14 C 1.46905 * 110.99773 * 273.82500 * 13 3 2 15 15 C 1.52999 * 109.47004 * 174.47473 * 14 13 3 16 16 H 1.08999 * 110.28530 * 305.69741 * 15 14 13 17 17 C 1.54260 * 110.32480 * 183.57509 * 15 14 13 18 18 C 1.54614 * 104.94641 * 240.97818 * 17 15 14 19 19 H 1.08994 * 110.36271 * 94.99652 * 18 17 15 20 20 C 1.53002 * 110.41866 * 217.41157 * 18 17 15 21 21 N 1.48563 * 104.63542 * 336.21330 * 18 17 15 22 22 C 1.46894 * 110.99735 * 159.00357 * 21 18 17 23 23 C 1.48558 * 104.21671 * 39.45229 * 21 18 17 24 24 H 1.09001 * 109.46549 * 294.46136 * 1 2 3 25 25 H 1.08996 * 109.47100 * 54.46133 * 1 2 3 26 26 H 1.08997 * 109.47237 * 174.46225 * 1 2 3 27 27 H 1.09005 * 109.46800 * 240.00306 * 2 1 3 28 28 H 1.09004 * 109.47571 * 120.00222 * 2 1 3 29 29 H 0.96995 * 120.00118 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99855 * 149.87145 * 13 3 2 31 31 H 1.08995 * 109.47273 * 54.47371 * 14 13 3 32 32 H 1.08995 * 109.46827 * 294.47216 * 14 13 3 33 33 H 1.09000 * 110.31940 * 359.89299 * 17 15 14 34 34 H 1.09000 * 110.32708 * 122.10700 * 17 15 14 35 35 H 1.09000 * 109.46980 * 176.68086 * 20 18 17 36 36 H 1.08999 * 109.47411 * 296.67869 * 20 18 17 37 37 H 1.08996 * 109.47359 * 56.68173 * 20 18 17 38 38 H 1.08995 * 109.47845 * 304.46001 * 22 21 18 39 39 H 1.09005 * 109.47043 * 64.46169 * 22 21 18 40 40 H 1.09006 * 109.46928 * 184.45845 * 22 21 18 41 41 H 1.09006 * 110.40944 * 201.73590 * 23 21 18 42 42 H 1.09003 * 110.41620 * 79.29594 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 3.1294 1.4427 0.0367 5 6 1.4967 2.1674 1.2043 6 1 0.8796 3.0442 1.0739 7 6 1.7873 1.7114 2.4726 8 7 2.5391 0.6440 2.6314 9 14 1.1144 2.6103 3.9654 10 1 -0.2070 2.0404 4.3322 11 1 2.0548 2.4526 5.1037 12 1 0.9602 4.0525 3.6468 13 7 1.5912 2.1206 -1.2234 14 6 2.5277 1.8840 -2.3302 15 6 1.9599 2.4873 -3.6165 16 1 0.9571 2.1031 -3.8035 17 6 2.8853 2.1727 -4.8099 18 6 3.3404 3.5533 -5.3364 19 1 4.3013 3.8273 -4.9011 20 6 3.4297 3.5392 -6.8638 21 7 2.2813 4.4938 -4.8881 22 6 2.7803 5.8751 -4.8628 23 6 1.9347 4.0279 -3.5207 24 1 -0.3632 0.4256 0.9355 25 1 -0.3633 0.5973 -0.8362 26 1 -0.3633 -1.0228 -0.0992 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.7433 0.3230 3.5236 30 1 1.4630 3.1085 -1.0630 31 1 2.6693 0.8116 -2.4635 32 1 3.4856 2.3513 -2.1018 33 1 3.7451 1.5901 -4.4789 34 1 2.3368 1.6341 -5.5827 35 1 3.6941 4.5343 -7.2215 36 1 4.1925 2.8262 -7.1766 37 1 2.4663 3.2471 -7.2814 38 1 3.6712 5.9284 -4.2372 39 1 3.0287 6.1903 -5.8763 40 1 2.0110 6.5319 -4.4564 41 1 0.9398 4.3752 -3.2416 42 1 2.6756 4.3762 -2.8011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396697279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:31 Heat of formation + Delta-G solvation = -11.293734 kcal Electronic energy + Delta-G solvation = -18016.185686 eV Core-core repulsion = 15416.307789 eV Total energy + Delta-G solvation = -2599.877897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26863 -36.24217 -33.48665 -31.89382 -31.34958 -29.92950 -26.75455 -25.99422 -24.96089 -23.22080 -22.86339 -20.31884 -19.68256 -18.95401 -16.46344 -15.51895 -15.45354 -15.02070 -14.65800 -14.14902 -13.67920 -13.43929 -13.12603 -13.10056 -12.50590 -12.38860 -12.07718 -12.02557 -11.73970 -11.55757 -11.22272 -11.12213 -10.95368 -10.87090 -10.55376 -10.46230 -10.33619 -10.26210 -9.92962 -9.63009 -9.31711 -8.75245 -8.47109 -8.45692 -7.20354 -6.00802 -4.06059 3.29828 3.36573 3.39130 4.03648 4.40733 4.68274 4.78602 5.05577 5.17405 5.30270 5.31311 5.42705 5.44517 5.52834 5.67545 5.69418 5.81654 5.82737 5.90320 5.92932 6.04825 6.16144 6.21991 6.25859 6.47646 6.56698 6.64322 6.74688 6.88795 6.93233 7.07745 7.26732 7.35021 7.53173 7.76451 7.81600 7.87150 8.28448 8.41872 8.70203 9.03721 9.58702 11.05248 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033881 B = 0.005229 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.215048 B = 5353.243900 C = 5810.296024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.069 3.931 15 C -0.086 4.086 16 H 0.085 0.915 17 C -0.116 4.116 18 C 0.055 3.945 19 H 0.048 0.952 20 C -0.134 4.134 21 N -0.514 5.514 22 C 0.014 3.986 23 C 0.039 3.961 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.012 0.988 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 5.069 -14.114 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.106 4.106 16 H 0.104 0.896 17 C -0.154 4.154 18 C -0.053 4.053 19 H 0.066 0.934 20 C -0.192 4.192 21 N -0.238 5.238 22 C -0.135 4.135 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.795 4.454 -14.499 15.189 hybrid contribution 1.201 1.087 1.763 2.394 sum 1.995 5.541 -12.736 14.032 Atomic orbital electron populations 1.21433 0.97498 0.97098 1.01568 1.21418 0.95109 0.98237 0.99204 1.19109 0.93153 0.91670 0.85302 0.98423 1.21190 1.31526 1.11925 0.90403 0.92378 1.24883 0.95081 0.95035 0.98836 1.69890 1.37408 1.23188 1.22320 0.86589 0.78806 0.80081 0.82478 1.20617 1.21359 1.20014 1.60668 1.47538 1.15943 1.07425 1.21982 0.93335 0.99810 0.90998 1.21924 1.00248 0.94073 0.94347 0.89622 1.22458 0.99451 0.95750 0.97754 1.22719 0.93423 0.93183 0.96010 0.93370 1.21695 1.02000 1.01192 0.94275 1.65353 1.34997 1.01682 1.21734 1.22489 0.98880 0.90841 1.01292 1.23185 1.01291 0.95493 0.88920 0.93012 0.93383 0.96916 0.97217 0.89767 0.93004 0.85445 0.91689 0.96761 0.91353 0.91059 0.93109 0.92485 0.91847 0.95576 0.91638 0.91378 0.89879 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.46 37.16 0.35 -2.35 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.35 2.30 -68.86 -0.16 5.20 16 4 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.72 7.33 -34.44 -0.25 -13.97 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.20 11.34 55.43 0.63 -24.57 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.69 -14.25 5.50 -107.95 -0.59 -14.85 16 14 C 0.07 1.23 4.62 -3.82 -0.02 1.21 16 15 C -0.09 -1.28 3.30 -89.24 -0.29 -1.57 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.12 -1.46 6.22 -25.22 -0.16 -1.62 16 18 C 0.05 0.66 2.89 -65.94 -0.19 0.47 16 19 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 20 C -0.13 -1.33 9.35 37.16 0.35 -0.98 16 21 N -0.51 -6.65 5.34 -230.20 -1.23 -7.88 16 22 C 0.01 0.15 9.42 60.06 0.57 0.72 16 23 C 0.04 0.55 5.35 -2.18 -0.01 0.54 16 24 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 25 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.01 0.21 7.42 -51.93 -0.39 -0.17 16 28 H 0.08 2.28 6.13 -51.93 -0.32 1.96 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.33 6.75 7.59 -39.29 -0.30 6.45 16 31 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.01 0.26 8.02 -51.93 -0.42 -0.15 16 33 H 0.07 0.85 7.71 -51.93 -0.40 0.45 16 34 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 35 H 0.05 0.47 7.54 -51.93 -0.39 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 39 H 0.06 0.64 7.53 -51.93 -0.39 0.25 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.64 7.60 -51.93 -0.39 0.25 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -27.54 322.25 -9.28 -36.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.86 Total: 2.82 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.06 Total: -13.34 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -1.20 Total: -47.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.54 -9.28 -36.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.525 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds