Wall clock time and date at job start Mon Mar 30 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47341 * 2 1 4 4 H 1.08994 * 109.46929 * 177.95404 * 3 2 1 5 5 C 1.50700 * 109.46918 * 57.95081 * 3 2 1 6 6 H 1.07998 * 120.00305 * 240.00222 * 5 3 2 7 7 C 1.37877 * 119.99756 * 60.00195 * 5 3 2 8 8 N 1.31516 * 120.00410 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46863 * 89.99744 * 9 7 5 11 11 H 1.48491 * 109.47269 * 209.99956 * 9 7 5 12 12 H 1.48503 * 109.47047 * 330.00320 * 9 7 5 13 13 N 1.46900 * 109.46894 * 297.95423 * 3 2 1 14 14 C 1.46905 * 110.99773 * 273.82500 * 13 3 2 15 15 C 1.52999 * 109.47004 * 174.47473 * 14 13 3 16 16 H 1.08999 * 110.28530 * 305.69741 * 15 14 13 17 17 C 1.54260 * 110.32480 * 183.57509 * 15 14 13 18 18 C 1.54614 * 104.94641 * 240.97818 * 17 15 14 19 19 H 1.08994 * 110.36271 * 94.99652 * 18 17 15 20 20 C 1.53002 * 110.41866 * 217.41157 * 18 17 15 21 21 N 1.48563 * 104.63542 * 336.21330 * 18 17 15 22 22 C 1.46894 * 110.99735 * 159.00357 * 21 18 17 23 23 C 1.48558 * 104.21671 * 39.45229 * 21 18 17 24 24 H 1.09001 * 109.46549 * 294.46136 * 1 2 3 25 25 H 1.08996 * 109.47100 * 54.46133 * 1 2 3 26 26 H 1.08997 * 109.47237 * 174.46225 * 1 2 3 27 27 H 1.09005 * 109.46800 * 240.00306 * 2 1 3 28 28 H 1.09004 * 109.47571 * 120.00222 * 2 1 3 29 29 H 0.96995 * 120.00118 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99855 * 149.87145 * 13 3 2 31 31 H 1.08995 * 109.47273 * 54.47371 * 14 13 3 32 32 H 1.08995 * 109.46827 * 294.47216 * 14 13 3 33 33 H 1.09000 * 110.31940 * 359.89299 * 17 15 14 34 34 H 1.09000 * 110.32708 * 122.10700 * 17 15 14 35 35 H 1.09000 * 109.46980 * 176.68086 * 20 18 17 36 36 H 1.08999 * 109.47411 * 296.67869 * 20 18 17 37 37 H 1.08996 * 109.47359 * 56.68173 * 20 18 17 38 38 H 1.08995 * 109.47845 * 304.46001 * 22 21 18 39 39 H 1.09005 * 109.47043 * 64.46169 * 22 21 18 40 40 H 1.09006 * 109.46928 * 184.45845 * 22 21 18 41 41 H 1.09006 * 110.40944 * 201.73590 * 23 21 18 42 42 H 1.09003 * 110.41620 * 79.29594 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 3.1294 1.4427 0.0367 5 6 1.4967 2.1674 1.2043 6 1 0.8796 3.0442 1.0739 7 6 1.7873 1.7114 2.4726 8 7 2.5391 0.6440 2.6314 9 14 1.1144 2.6103 3.9654 10 1 -0.2070 2.0404 4.3322 11 1 2.0548 2.4526 5.1037 12 1 0.9602 4.0525 3.6468 13 7 1.5912 2.1206 -1.2234 14 6 2.5277 1.8840 -2.3302 15 6 1.9599 2.4873 -3.6165 16 1 0.9571 2.1031 -3.8035 17 6 2.8853 2.1727 -4.8099 18 6 3.3404 3.5533 -5.3364 19 1 4.3013 3.8273 -4.9011 20 6 3.4297 3.5392 -6.8638 21 7 2.2813 4.4938 -4.8881 22 6 2.7803 5.8751 -4.8628 23 6 1.9347 4.0279 -3.5207 24 1 -0.3632 0.4256 0.9355 25 1 -0.3633 0.5973 -0.8362 26 1 -0.3633 -1.0228 -0.0992 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.7433 0.3230 3.5236 30 1 1.4630 3.1085 -1.0630 31 1 2.6693 0.8116 -2.4635 32 1 3.4856 2.3513 -2.1018 33 1 3.7451 1.5901 -4.4789 34 1 2.3368 1.6341 -5.5827 35 1 3.6941 4.5343 -7.2215 36 1 4.1925 2.8262 -7.1766 37 1 2.4663 3.2471 -7.2814 38 1 3.6712 5.9284 -4.2372 39 1 3.0287 6.1903 -5.8763 40 1 2.0110 6.5319 -4.4564 41 1 0.9398 4.3752 -3.2416 42 1 2.6756 4.3762 -2.8011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396697279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:31 Heat of formation + Delta-G solvation = -28.742439 kcal Electronic energy + Delta-G solvation = -18016.942318 eV Core-core repulsion = 15416.307789 eV Total energy + Delta-G solvation = -2600.634529 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36783 -38.00657 -35.09162 -33.38910 -32.66163 -31.49533 -28.48887 -27.07477 -26.31407 -25.01703 -24.27289 -21.42664 -20.87259 -20.81600 -18.39055 -16.94296 -16.72135 -16.56034 -16.00104 -15.48265 -15.17171 -15.06463 -14.55508 -14.36353 -13.98491 -13.67679 -13.60087 -13.30821 -13.00149 -12.90220 -12.77493 -12.60387 -12.42430 -12.24661 -12.04422 -11.95858 -11.81341 -11.67721 -11.41782 -11.37277 -11.17564 -10.77112 -10.53484 -9.48884 -8.99674 -8.09614 -6.21802 1.41671 1.43136 1.52085 2.42466 3.04433 3.19143 3.54752 3.64604 3.89071 4.09741 4.21693 4.40158 4.44595 4.52457 4.53408 4.62600 4.63886 4.73646 4.80967 4.83134 4.85143 4.93165 4.96595 4.97531 5.03490 5.14272 5.23434 5.30213 5.36306 5.40425 5.46088 5.57841 5.71965 5.82429 5.89677 5.91601 6.10309 6.28021 6.50207 6.81158 7.04167 7.47106 8.95641 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033881 B = 0.005229 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.215048 B = 5353.243900 C = 5810.296024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.221 3.779 4 H -0.040 1.040 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.679 5.679 14 C 0.075 3.925 15 C -0.079 4.079 16 H 0.081 0.919 17 C -0.112 4.112 18 C 0.053 3.947 19 H 0.044 0.956 20 C -0.128 4.128 21 N -0.519 5.519 22 C 0.013 3.987 23 C 0.043 3.957 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.058 0.942 32 H 0.005 0.995 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.022 0.978 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 5.775 -15.354 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.112 3.888 4 H -0.022 1.022 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.309 5.309 14 C -0.055 4.055 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.151 4.151 18 C -0.055 4.055 19 H 0.062 0.938 20 C -0.186 4.186 21 N -0.243 5.243 22 C -0.136 4.136 23 C -0.086 4.086 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.232 5.172 -15.761 16.590 hybrid contribution 1.414 0.866 2.106 2.681 sum 1.646 6.038 -13.655 15.021 Atomic orbital electron populations 1.21293 0.95928 0.98476 1.00664 1.21303 0.96386 0.97636 0.98301 1.18913 0.90793 0.92420 0.86656 1.02207 1.21449 1.31393 1.11991 0.91358 0.92500 1.25624 0.95325 0.95717 1.01531 1.70025 1.38408 1.24411 1.22823 0.85618 0.78126 0.79184 0.79083 1.20186 1.21192 1.19294 1.60611 1.48019 1.15765 1.06483 1.21986 0.92577 0.99587 0.91367 1.21798 1.00252 0.94340 0.93448 0.90090 1.22459 0.99105 0.96524 0.96995 1.22794 0.92849 0.92325 0.97508 0.93803 1.21658 1.02425 1.02146 0.92338 1.65384 1.35759 1.02749 1.20408 1.22549 0.98814 0.89853 1.02345 1.23075 1.00779 0.94982 0.89714 0.95092 0.92620 0.94701 0.96123 0.92602 0.93054 0.85278 0.92346 0.97640 0.91229 0.89793 0.92320 0.91114 0.91995 0.95902 0.89941 0.91006 0.90201 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.46 71.98 0.68 -4.07 16 2 C -0.10 -4.80 5.57 30.60 0.17 -4.63 16 3 C 0.22 11.18 2.30 44.17 0.10 11.28 16 4 H -0.04 -2.27 7.84 -2.39 -0.02 -2.28 16 5 C -0.52 -28.31 7.33 25.60 0.19 -28.13 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.94 5.30 84.65 0.45 1.39 16 8 N -0.92 -52.82 11.34 21.45 0.24 -52.58 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 N -0.68 -28.33 5.50 -495.45 -2.73 -31.05 16 14 C 0.07 2.67 4.62 86.30 0.40 3.07 16 15 C -0.08 -2.26 3.30 -9.90 -0.03 -2.29 16 16 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.11 -2.65 6.22 31.57 0.20 -2.46 16 18 C 0.05 1.18 2.89 45.14 0.13 1.31 16 19 H 0.04 1.01 7.90 -2.39 -0.02 0.99 16 20 C -0.13 -2.20 9.35 71.98 0.67 -1.52 16 21 N -0.52 -12.56 5.34 -882.21 -4.71 -17.27 16 22 C 0.01 0.26 9.42 127.69 1.20 1.47 16 23 C 0.04 1.18 5.35 86.45 0.46 1.64 16 24 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 25 H 0.05 2.37 7.50 -2.39 -0.02 2.35 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.02 0.93 7.42 -2.38 -0.02 0.92 16 28 H 0.06 3.08 6.13 -2.38 -0.01 3.07 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.33 13.61 7.59 -89.69 -0.68 12.93 16 31 H 0.06 2.15 7.38 -2.39 -0.02 2.13 16 32 H 0.01 0.20 8.02 -2.39 -0.02 0.19 16 33 H 0.07 1.63 7.71 -2.39 -0.02 1.61 16 34 H 0.08 1.79 7.85 -2.39 -0.02 1.77 16 35 H 0.06 0.92 7.54 -2.39 -0.02 0.90 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 38 H 0.02 0.48 7.97 -2.39 -0.02 0.46 16 39 H 0.08 1.40 7.53 -2.38 -0.02 1.38 16 40 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.03 0.90 7.60 -2.39 -0.02 0.89 16 Total: -1.00 -58.30 322.25 -0.27 -58.57 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.28 Total: 19.82 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.62 Total: -22.96 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -7.20 Total: -100.90 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -58.30 -0.27 -58.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.827 kcal (2) G-P(sol) polarization free energy of solvation -58.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds