Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 H 1.09003 * 109.47180 * 305.69636 * 3 2 1 5 5 C 1.50700 * 109.47170 * 185.69861 * 3 2 1 6 6 H 1.08008 * 119.99861 * 239.99661 * 5 3 2 7 7 C 1.37874 * 120.00333 * 59.99931 * 5 3 2 8 8 N 1.31521 * 120.00137 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99972 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.47116 * 270.00367 * 9 7 5 11 11 H 1.48498 * 109.46879 * 29.99836 * 9 7 5 12 12 H 1.48497 * 109.47215 * 150.00353 * 9 7 5 13 13 N 1.46900 * 109.47102 * 65.69648 * 3 2 1 14 14 C 1.46900 * 110.99845 * 205.16943 * 13 3 2 15 15 C 1.53000 * 109.47063 * 185.05666 * 14 13 3 16 16 H 1.09000 * 110.87452 * 51.16031 * 15 14 13 17 17 C 1.55148 * 110.98938 * 175.00088 * 15 14 13 18 18 C 1.54319 * 103.01299 * 153.74806 * 17 15 14 19 19 H 1.08999 * 109.89119 * 97.29017 * 18 17 15 20 20 C 1.53005 * 109.88575 * 218.31000 * 18 17 15 21 21 N 1.47440 * 107.23876 * 337.71425 * 18 17 15 22 22 C 1.46895 * 111.00138 * 236.74385 * 21 18 17 23 23 C 1.47843 * 108.56437 * 359.01462 * 21 18 17 24 24 H 1.09001 * 109.46948 * 294.37694 * 1 2 3 25 25 H 1.08998 * 109.46847 * 54.37321 * 1 2 3 26 26 H 1.08998 * 109.47303 * 174.37836 * 1 2 3 27 27 H 1.09001 * 109.46818 * 240.00189 * 2 1 3 28 28 H 1.09001 * 109.47377 * 120.00138 * 2 1 3 29 29 H 0.96998 * 119.99539 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99967 * 329.12582 * 13 3 2 31 31 H 1.08997 * 109.47433 * 305.06233 * 14 13 3 32 32 H 1.09004 * 109.47246 * 65.05938 * 14 13 3 33 33 H 1.08992 * 110.70683 * 272.12705 * 17 15 14 34 34 H 1.09001 * 110.70415 * 35.19190 * 17 15 14 35 35 H 1.08999 * 109.46912 * 60.00175 * 20 18 17 36 36 H 1.09001 * 109.47143 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47083 * 300.00088 * 20 18 17 38 38 H 1.09001 * 109.46984 * 60.00174 * 22 21 18 39 39 H 1.09004 * 109.46821 * 180.02562 * 22 21 18 40 40 H 1.09002 * 109.47122 * 299.99682 * 22 21 18 41 41 H 1.08994 * 110.37462 * 265.26381 * 23 21 18 42 42 H 1.08998 * 110.37225 * 142.92395 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1411 6 1 4.1546 1.8863 0.6299 7 6 4.1291 0.8834 -1.2543 8 7 5.4385 0.8849 -1.3771 9 14 3.0668 0.1205 -2.5881 10 1 2.8483 -1.3168 -2.2852 11 1 1.7579 0.8201 -2.6390 12 1 3.7496 0.2516 -3.9002 13 7 1.6658 2.0941 1.2623 14 6 1.5812 3.5514 1.0974 15 6 1.3145 4.2036 2.4555 16 1 2.0275 3.8528 3.2016 17 6 1.3427 5.7508 2.3441 18 6 0.4354 6.1997 3.5089 19 1 1.0447 6.4616 4.3739 20 6 -0.4043 7.4046 3.0801 21 7 -0.4469 5.0651 3.8378 22 6 -1.8605 5.4534 3.7454 23 6 -0.1424 3.9496 2.9165 24 1 -0.3633 0.4242 0.9361 25 1 -0.3633 0.5986 -0.8353 26 1 -0.3634 -1.0227 -0.1007 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8526 0.4903 -2.1605 30 1 0.7997 1.7197 1.6196 31 1 2.5211 3.9265 0.6926 32 1 0.7685 3.7930 0.4124 33 1 2.3563 6.1284 2.4776 34 1 0.9347 6.0758 1.3870 35 1 -1.0243 7.1301 2.2266 36 1 -1.0419 7.7162 3.9074 37 1 0.2552 8.2262 2.8008 38 1 -2.0807 5.7845 2.7305 39 1 -2.4892 4.5981 3.9933 40 1 -2.0607 6.2657 4.4441 41 1 -0.8192 3.9674 2.0624 42 1 -0.2143 2.9956 3.4389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396697280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -18.105557 kcal Electronic energy + Delta-G solvation = -18107.324462 eV Core-core repulsion = 15507.151183 eV Total energy + Delta-G solvation = -2600.173279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58519 -38.34761 -35.11028 -34.02946 -32.32945 -31.81459 -29.21083 -27.23882 -26.36232 -24.87025 -23.90946 -21.77300 -21.16444 -20.40189 -18.85759 -17.61631 -16.98310 -16.72258 -15.89247 -15.61515 -15.47340 -14.98226 -14.71670 -14.52989 -14.23529 -13.80105 -13.64791 -13.47675 -13.21316 -13.09620 -12.82054 -12.55172 -12.50916 -12.28919 -12.20782 -12.03788 -11.80576 -11.57425 -11.54785 -11.47352 -11.23106 -11.16009 -10.66865 -9.20895 -9.04650 -8.27346 -6.29022 1.28119 1.33121 1.43420 2.31234 3.02980 3.06326 3.43057 3.70078 3.74311 4.03083 4.24088 4.27384 4.31320 4.36819 4.40418 4.43443 4.51845 4.58844 4.61458 4.64348 4.71647 4.81462 4.91219 4.92307 4.97842 4.99820 5.06379 5.10171 5.18350 5.20300 5.23596 5.31324 5.42628 5.48640 5.71788 6.04067 6.07461 6.19772 6.51106 6.77544 6.97128 7.35606 8.90205 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.005585 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.818616 B = 5012.610694 C = 5482.998442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.194 3.806 4 H -0.008 1.008 5 C -0.500 4.500 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.264 1.264 11 H -0.249 1.249 12 H -0.300 1.300 13 N -0.681 5.681 14 C 0.085 3.915 15 C -0.087 4.087 16 H 0.074 0.926 17 C -0.131 4.131 18 C 0.068 3.932 19 H 0.084 0.916 20 C -0.162 4.162 21 N -0.542 5.542 22 C 0.016 3.984 23 C 0.053 3.947 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.264 0.736 30 H 0.335 0.665 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.872 8.882 7.167 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.085 3.915 4 H 0.010 0.990 5 C -0.538 4.538 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.173 1.173 12 H -0.227 1.227 13 N -0.314 5.314 14 C -0.045 4.045 15 C -0.107 4.107 16 H 0.092 0.908 17 C -0.170 4.170 18 C -0.040 4.040 19 H 0.102 0.898 20 C -0.219 4.219 21 N -0.267 5.267 22 C -0.132 4.132 23 C -0.074 4.074 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.031 8.700 7.831 19.850 hybrid contribution -0.413 -0.162 -2.119 2.165 sum -16.444 8.538 5.712 19.389 Atomic orbital electron populations 1.21840 0.94322 1.02481 1.01959 1.22004 0.96391 0.98074 1.00892 1.19404 0.93562 0.91204 0.87317 0.99039 1.21312 0.91760 1.36326 1.04431 0.95083 1.25828 0.95952 0.96709 1.00450 1.70058 1.11158 1.47742 1.30388 0.85847 0.79410 0.79624 0.77483 1.19006 1.17349 1.22748 1.60303 1.37472 1.03685 1.29896 1.21713 0.99015 0.88362 0.95442 1.22196 0.97098 0.95074 0.96309 0.90781 1.22891 1.00828 0.94407 0.98878 1.22432 0.94092 0.90675 0.96833 0.89821 1.22301 1.00382 0.97471 1.01796 1.63711 1.05224 1.06824 1.50894 1.22639 0.88220 1.01765 1.00547 1.23023 0.94742 0.95405 0.94249 0.91168 0.93367 0.91171 0.94262 0.91818 0.92683 0.84530 0.93574 0.95865 0.90726 0.91254 0.92537 0.90858 0.91397 0.94826 0.91447 0.90022 0.93631 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.65 71.98 0.69 -3.83 16 2 C -0.14 -5.57 5.01 30.59 0.15 -5.42 16 3 C 0.19 9.07 1.61 44.17 0.07 9.14 16 4 H -0.01 -0.38 6.91 -2.39 -0.02 -0.39 16 5 C -0.50 -29.26 9.13 25.60 0.23 -29.03 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 7 C 0.01 0.41 5.45 84.65 0.46 0.87 16 8 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 9 Si 0.95 45.49 24.42 68.60 1.67 47.17 16 10 H -0.26 -11.97 6.82 99.48 0.68 -11.29 16 11 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 13 N -0.68 -27.32 6.27 -495.45 -3.11 -30.43 16 14 C 0.08 3.07 4.95 86.30 0.43 3.49 16 15 C -0.09 -2.57 3.25 -9.41 -0.03 -2.60 16 16 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 17 C -0.13 -3.25 5.94 31.78 0.19 -3.06 16 18 C 0.07 1.44 4.02 45.26 0.18 1.62 16 19 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 20 C -0.16 -2.64 7.85 71.98 0.56 -2.08 16 21 N -0.54 -12.37 5.44 -886.56 -4.83 -17.20 16 22 C 0.02 0.29 8.29 127.69 1.06 1.35 16 23 C 0.05 1.34 5.75 86.77 0.50 1.84 16 24 H 0.07 1.84 6.65 -2.39 -0.02 1.83 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.72 3.22 -2.39 -0.01 1.71 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.34 11.37 6.21 -89.70 -0.56 10.82 16 31 H 0.05 1.97 7.92 -2.39 -0.02 1.95 16 32 H 0.02 0.79 7.96 -2.38 -0.02 0.77 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.68 7.75 -2.39 -0.02 1.66 16 35 H 0.06 0.95 6.60 -2.39 -0.02 0.93 16 36 H 0.07 1.02 6.72 -2.39 -0.02 1.01 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.03 0.57 6.42 -2.39 -0.02 0.56 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.08 1.21 6.76 -2.39 -0.02 1.20 16 41 H 0.05 1.11 7.55 -2.39 -0.02 1.09 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.78 311.75 -1.12 -67.90 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.33 Total: 20.86 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.50 Total: -27.70 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -7.63 Total: -108.23 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.17 kcal Total: -66.78 -1.12 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.795 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds