Wall clock time and date at job start Mon Mar 30 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47326 * 2 1 4 4 H 1.08993 * 109.46971 * 174.04406 * 3 2 1 5 5 C 1.50700 * 109.46971 * 54.04061 * 3 2 1 6 6 H 1.07993 * 120.00311 * 239.99832 * 5 3 2 7 7 C 1.37874 * 119.99895 * 60.00379 * 5 3 2 8 8 N 1.31519 * 120.00141 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00063 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46918 * 60.00142 * 9 7 5 11 11 H 1.48501 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47204 * 300.00097 * 9 7 5 13 13 N 1.46898 * 109.46766 * 294.04622 * 3 2 1 14 14 C 1.46903 * 110.99637 * 275.15214 * 13 3 2 15 15 C 1.53003 * 109.46977 * 176.99573 * 14 13 3 16 16 H 1.09008 * 110.28824 * 55.67589 * 15 14 13 17 17 C 1.54260 * 110.32592 * 177.90764 * 15 14 13 18 18 C 1.54385 * 105.05877 * 118.89527 * 17 15 14 19 19 H 1.08996 * 110.41472 * 265.07506 * 18 17 15 20 20 C 1.52999 * 110.41018 * 142.63617 * 18 17 15 21 21 N 1.48554 * 104.59220 * 23.85718 * 18 17 15 22 22 C 1.46902 * 110.99921 * 200.95792 * 21 18 17 23 23 C 1.48558 * 104.22718 * 320.51244 * 21 18 17 24 24 H 1.09005 * 109.47201 * 58.64022 * 1 2 3 25 25 H 1.08997 * 109.47485 * 178.64361 * 1 2 3 26 26 H 1.09005 * 109.47328 * 298.64203 * 1 2 3 27 27 H 1.09001 * 109.46999 * 239.99529 * 2 1 3 28 28 H 1.08998 * 109.46752 * 119.99751 * 2 1 3 29 29 H 0.97003 * 119.99748 * 180.02562 * 8 7 5 30 30 H 1.00893 * 111.00421 * 39.10616 * 13 3 2 31 31 H 1.09000 * 109.47147 * 57.00359 * 14 13 3 32 32 H 1.08994 * 109.47341 * 296.99494 * 14 13 3 33 33 H 1.08995 * 110.32882 * 237.79169 * 17 15 14 34 34 H 1.09003 * 110.32060 * 359.90223 * 17 15 14 35 35 H 1.09011 * 109.46871 * 303.37595 * 20 18 17 36 36 H 1.09001 * 109.47019 * 63.37064 * 20 18 17 37 37 H 1.08993 * 109.47270 * 183.37676 * 20 18 17 38 38 H 1.08997 * 109.47346 * 175.29535 * 22 21 18 39 39 H 1.09001 * 109.47439 * 55.29147 * 22 21 18 40 40 H 1.09002 * 109.47120 * 295.29084 * 22 21 18 41 41 H 1.09000 * 110.41472 * 158.26051 * 23 21 18 42 42 H 1.09000 * 110.41300 * 280.59289 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1247 1.4443 0.1066 5 6 1.4209 2.1942 1.1501 6 1 0.8142 3.0673 0.9604 7 6 1.6291 1.7673 2.4444 8 7 2.3675 0.7038 2.6754 9 14 0.8622 2.6995 3.8701 10 1 -0.6157 2.6975 3.7250 11 1 1.2354 2.0430 5.1487 12 1 1.3577 4.0994 3.8699 13 7 1.6712 2.0922 -1.2648 14 6 2.6606 1.8053 -2.3121 15 6 2.2051 2.4346 -3.6302 16 1 2.0334 3.5031 -3.4994 17 6 3.2562 2.1897 -4.7323 18 6 2.5196 1.3713 -5.8144 19 1 2.6932 0.3051 -5.6687 20 6 2.9744 1.8012 -7.2105 21 7 1.0834 1.6943 -5.6150 22 6 0.2241 0.6588 -6.2043 23 6 0.9217 1.7437 -4.1391 24 1 -0.3634 0.5348 -0.8776 25 1 -0.3634 -1.0273 -0.0243 26 1 -0.3634 0.4926 0.9019 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5137 0.4034 3.5861 30 1 0.7456 1.8164 -1.5565 31 1 2.7541 0.7266 -2.4378 32 1 3.6255 2.2226 -2.0245 33 1 3.6010 3.1381 -5.1443 34 1 4.0975 1.6226 -4.3338 35 1 2.8095 2.8718 -7.3327 36 1 4.0351 1.5810 -7.3309 37 1 2.4027 1.2574 -7.9625 38 1 -0.8184 0.8762 -5.9721 39 1 0.4928 -0.3140 -5.7925 40 1 0.3603 0.6457 -7.2857 41 1 0.0427 2.3304 -3.8723 42 1 0.8433 0.7359 -3.7313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396697281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:36 Heat of formation + Delta-G solvation = -27.577496 kcal Electronic energy + Delta-G solvation = -18127.931883 eV Core-core repulsion = 15527.347870 eV Total energy + Delta-G solvation = -2600.584014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42272 -38.20798 -35.07362 -33.44841 -32.63515 -31.33949 -28.47375 -27.12192 -26.34060 -25.08512 -24.30434 -21.52754 -21.02589 -20.84421 -18.16147 -17.05740 -16.81224 -16.47375 -16.02359 -15.47127 -15.32172 -14.84426 -14.63564 -14.34208 -14.11281 -13.73900 -13.63862 -13.31415 -13.04914 -12.93206 -12.75651 -12.56830 -12.46492 -12.24848 -12.04720 -11.99731 -11.83583 -11.69967 -11.49718 -11.38679 -11.29621 -10.93200 -10.42675 -9.48997 -8.92749 -8.04818 -6.13393 1.44766 1.45719 1.53181 2.46512 3.03426 3.24009 3.54879 3.63880 3.88917 4.08639 4.19990 4.37982 4.43475 4.49479 4.53059 4.53727 4.57089 4.63141 4.69644 4.74239 4.82668 4.85354 4.94149 4.97774 5.01771 5.07969 5.13982 5.23194 5.31261 5.40238 5.41409 5.43127 5.66853 5.73268 5.84311 5.89065 6.10198 6.32178 6.69335 6.87075 6.99642 7.54553 9.00574 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.042495 B = 0.005038 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.743527 B = 5556.805292 C = 5732.456697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C 0.220 3.780 4 H -0.005 1.005 5 C -0.501 4.501 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.074 3.926 15 C -0.083 4.083 16 H 0.079 0.921 17 C -0.112 4.112 18 C 0.054 3.946 19 H 0.045 0.955 20 C -0.128 4.128 21 N -0.518 5.518 22 C 0.013 3.987 23 C 0.041 3.959 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.021 0.979 28 H 0.061 0.939 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.012 0.988 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -0.512 -17.031 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.176 4.176 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.540 4.540 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.056 4.056 15 C -0.102 4.102 16 H 0.098 0.902 17 C -0.151 4.151 18 C -0.054 4.054 19 H 0.063 0.937 20 C -0.186 4.186 21 N -0.243 5.243 22 C -0.136 4.136 23 C -0.087 4.087 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.103 0.490 -16.983 17.026 hybrid contribution -0.184 -1.537 1.422 2.102 sum -1.287 -1.046 -15.561 15.650 Atomic orbital electron populations 1.21442 0.95879 0.99290 1.00887 1.21932 0.96539 1.00071 0.99098 1.18949 0.93571 0.89487 0.86874 0.98715 1.21257 1.30399 1.11415 0.90916 0.92932 1.25602 0.95974 0.95904 1.00966 1.70014 1.40253 1.25282 1.20667 0.85704 0.79086 0.78762 0.78621 1.19608 1.21257 1.20136 1.60745 1.04901 1.62862 1.03299 1.21988 0.96044 0.96348 0.91244 1.21836 0.94860 1.00528 0.93016 0.90248 1.22411 0.97231 1.01016 0.94397 1.22748 0.88199 0.97479 0.96979 0.93657 1.21662 1.01134 1.01968 0.93827 1.65379 1.04834 1.44268 1.09771 1.22556 0.97990 0.92201 1.00845 1.23085 0.98687 0.98759 0.88148 0.93419 0.93840 0.93823 0.96021 0.92052 0.93228 0.84945 0.97025 0.92730 0.89873 0.91147 0.92046 0.91117 0.92261 0.90960 0.95790 0.89946 0.90219 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.39 71.98 0.68 -4.28 16 2 C -0.14 -6.48 5.50 30.59 0.17 -6.31 16 3 C 0.22 11.11 2.33 44.17 0.10 11.22 16 4 H -0.01 -0.29 7.84 -2.39 -0.02 -0.31 16 5 C -0.50 -27.54 7.35 25.60 0.19 -27.35 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.75 5.22 84.65 0.44 1.19 16 8 N -0.92 -53.04 11.39 21.45 0.24 -52.79 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.69 -29.05 6.25 -495.45 -3.10 -32.15 16 14 C 0.07 2.64 4.65 86.30 0.40 3.04 16 15 C -0.08 -2.39 3.31 -9.90 -0.03 -2.42 16 16 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.11 -2.65 6.20 31.49 0.20 -2.45 16 18 C 0.05 1.18 2.89 45.07 0.13 1.31 16 19 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 20 C -0.13 -2.18 9.35 71.98 0.67 -1.50 16 21 N -0.52 -12.32 5.34 -882.68 -4.71 -17.04 16 22 C 0.01 0.25 9.41 127.69 1.20 1.45 16 23 C 0.04 1.12 5.15 86.45 0.44 1.57 16 24 H 0.05 1.80 6.43 -2.38 -0.02 1.78 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 2.03 7.04 -2.38 -0.02 2.01 16 27 H 0.02 0.94 7.29 -2.39 -0.02 0.92 16 28 H 0.06 3.30 6.25 -2.39 -0.01 3.29 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.33 13.19 5.72 -89.70 -0.51 12.67 16 31 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 32 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 33 H 0.08 1.79 7.84 -2.39 -0.02 1.77 16 34 H 0.07 1.64 7.71 -2.39 -0.02 1.62 16 35 H 0.06 1.08 8.12 -2.38 -0.02 1.06 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.91 7.54 -2.39 -0.02 0.89 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.02 0.48 7.97 -2.39 -0.02 0.46 16 40 H 0.08 1.36 7.54 -2.39 -0.02 1.34 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.03 0.95 7.63 -2.39 -0.02 0.93 16 Total: -1.00 -58.82 319.55 -0.50 -59.32 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.45 Total: 21.16 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 4.59 Total: -24.53 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -7.57 Total: -101.98 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -58.82 -0.50 -59.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.746 kcal (2) G-P(sol) polarization free energy of solvation -58.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds