Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 H 1.09001 * 109.47358 * 304.24435 * 3 2 1 5 5 C 1.50697 * 109.47231 * 184.24484 * 3 2 1 6 6 H 1.08001 * 120.00204 * 240.00022 * 5 3 2 7 7 C 1.37877 * 120.00133 * 59.99868 * 5 3 2 8 8 N 1.31512 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47008 * 89.99759 * 9 7 5 11 11 H 1.48500 * 109.47321 * 209.99676 * 9 7 5 12 12 H 1.48495 * 109.47019 * 329.99969 * 9 7 5 13 13 N 1.46902 * 109.47472 * 64.24064 * 3 2 1 14 14 C 1.46896 * 111.00229 * 205.88977 * 13 3 2 15 15 C 1.53005 * 109.47177 * 174.70988 * 14 13 3 16 16 H 1.08999 * 110.62549 * 303.35527 * 15 14 13 17 17 C 1.55139 * 110.85699 * 180.14028 * 15 14 13 18 18 C 1.54905 * 101.65351 * 205.89518 * 17 15 14 19 19 H 1.09000 * 110.37735 * 278.24407 * 18 17 15 20 20 C 1.53000 * 110.37440 * 155.90054 * 18 17 15 21 21 N 1.47842 * 104.79465 * 37.07293 * 18 17 15 22 22 C 1.46904 * 110.99900 * 213.63505 * 21 18 17 23 23 C 1.47446 * 108.56802 * 335.90084 * 21 18 17 24 24 H 1.09008 * 109.47088 * 294.93157 * 1 2 3 25 25 H 1.08996 * 109.47160 * 54.93131 * 1 2 3 26 26 H 1.08995 * 109.47446 * 174.93631 * 1 2 3 27 27 H 1.08995 * 109.47261 * 239.99765 * 2 1 3 28 28 H 1.08997 * 109.47221 * 119.99820 * 2 1 3 29 29 H 0.97005 * 119.99975 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99303 * 81.93904 * 13 3 2 31 31 H 1.09001 * 109.46752 * 54.71551 * 14 13 3 32 32 H 1.08995 * 109.47626 * 294.71575 * 14 13 3 33 33 H 1.08995 * 110.99186 * 323.99190 * 17 15 14 34 34 H 1.09003 * 110.98524 * 87.80375 * 17 15 14 35 35 H 1.09004 * 109.46658 * 303.17458 * 20 18 17 36 36 H 1.09003 * 109.47112 * 63.17040 * 20 18 17 37 37 H 1.08996 * 109.47074 * 183.17645 * 20 18 17 38 38 H 1.08999 * 109.46884 * 180.71684 * 22 21 18 39 39 H 1.08999 * 109.47350 * 300.71281 * 22 21 18 40 40 H 1.08994 * 109.46955 * 60.71880 * 22 21 18 41 41 H 1.09007 * 109.88598 * 120.39813 * 23 21 18 42 42 H 1.09000 * 109.88855 * 241.58013 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1389 1.8918 0.6765 7 6 4.1584 0.8731 -1.1992 8 7 3.4331 0.3271 -2.1508 9 14 6.0218 0.8741 -1.3293 10 1 6.5629 -0.3552 -0.6957 11 1 6.4182 0.9091 -2.7600 12 1 6.5657 2.0690 -0.6355 13 7 1.6358 2.1049 1.2473 14 6 1.5387 3.5591 1.0637 15 6 0.9903 4.1989 2.3408 16 1 0.0269 3.7632 2.6054 17 6 0.8711 5.7374 2.1805 18 6 0.9810 6.2145 3.6501 19 1 0.0173 6.1247 4.1514 20 6 1.4785 7.6603 3.7050 21 7 1.9697 5.3062 4.2690 22 6 1.6445 5.0566 5.6797 23 6 1.9952 4.0472 3.5020 24 1 -0.3634 0.4332 0.9320 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3634 -1.0236 -0.0907 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8658 -0.0748 -2.9203 30 1 2.2688 1.8768 1.9993 31 1 0.8686 3.7763 0.2319 32 1 2.5272 3.9651 0.8495 33 1 1.6903 6.1320 1.5795 34 1 -0.0929 6.0117 1.7519 35 1 2.4346 7.7354 3.1868 36 1 0.7514 8.3134 3.2224 37 1 1.6042 7.9621 4.7448 38 1 2.3947 4.3957 6.1140 39 1 1.6346 6.0015 6.2230 40 1 0.6632 4.5874 5.7488 41 1 2.9960 3.8744 3.1061 42 1 1.6991 3.2166 4.1427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396697282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = -15.075487 kcal Electronic energy + Delta-G solvation = -18008.532518 eV Core-core repulsion = 15408.490633 eV Total energy + Delta-G solvation = -2600.041886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.23723 -36.15242 -33.35079 -31.88009 -31.50202 -30.08766 -26.75635 -26.03615 -24.97859 -23.27975 -22.25483 -20.40670 -19.37017 -19.29758 -16.79207 -16.20404 -15.08418 -14.79620 -14.34976 -14.02616 -13.63397 -13.55186 -13.02307 -12.92291 -12.53099 -12.45937 -12.12682 -11.96869 -11.76181 -11.33116 -11.19671 -11.18281 -10.98678 -10.88853 -10.69275 -10.49541 -10.45159 -10.25778 -10.04204 -9.58097 -9.38864 -9.02936 -8.36701 -8.23410 -7.22238 -5.98039 -4.10904 3.28096 3.35244 3.38382 4.04696 4.40952 4.72159 4.80546 5.09552 5.24226 5.28918 5.38229 5.43266 5.46747 5.58083 5.63951 5.78915 5.84913 5.91021 5.96858 5.98233 6.09962 6.24163 6.32478 6.39893 6.45408 6.51518 6.56557 6.72795 6.76272 7.08328 7.15659 7.18480 7.18942 7.46498 7.61496 7.79414 8.11001 8.17430 8.35851 8.68983 9.02163 9.56768 11.02032 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.005838 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.733396 B = 4794.653198 C = 5351.475532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.079 3.921 15 C -0.103 4.103 16 H 0.076 0.924 17 C -0.120 4.120 18 C 0.066 3.934 19 H 0.050 0.950 20 C -0.133 4.133 21 N -0.533 5.533 22 C 0.022 3.978 23 C 0.048 3.952 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 9.309 10.361 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.051 4.051 15 C -0.123 4.123 16 H 0.094 0.906 17 C -0.159 4.159 18 C -0.042 4.042 19 H 0.068 0.932 20 C -0.191 4.191 21 N -0.258 5.258 22 C -0.127 4.127 23 C -0.079 4.079 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.509 9.330 10.066 14.790 hybrid contribution 1.250 -0.244 -0.113 1.278 sum -4.260 9.087 9.953 14.134 Atomic orbital electron populations 1.21683 0.99060 0.98207 1.00311 1.21496 0.92024 0.99318 1.01624 1.19143 0.92684 0.91125 0.86365 0.95126 1.21868 0.92730 1.37903 1.05805 0.92886 1.24928 0.97930 0.95015 0.95643 1.69880 1.34853 1.38078 1.09588 0.86666 0.86153 0.78415 0.77196 1.20649 1.21215 1.20041 1.60900 1.55148 1.06117 1.09761 1.21692 0.98689 0.90055 0.94697 1.22428 0.99110 0.94465 0.96293 0.90580 1.22798 1.02138 0.95491 0.95481 1.22567 0.93244 0.93614 0.94782 0.93169 1.21683 1.01496 0.94474 1.01434 1.63521 1.47551 1.12625 1.02055 1.22500 0.99156 1.01075 0.89929 1.22890 1.00309 0.90187 0.94555 0.93548 0.94499 0.95729 0.89219 0.95157 0.92917 0.85804 0.92168 0.95180 0.90493 0.91144 0.91933 0.92641 0.93103 0.91526 0.91917 0.95731 0.90329 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.21 5.31 1.98 -68.86 -0.14 5.17 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.66 8.47 -34.44 -0.29 -14.96 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.09 11.29 55.43 0.63 -24.46 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.69 -14.31 5.73 -107.95 -0.62 -14.92 16 14 C 0.08 1.47 4.90 -3.82 -0.02 1.45 16 15 C -0.10 -1.55 3.19 -88.80 -0.28 -1.83 16 16 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.12 -1.57 5.95 -24.59 -0.15 -1.72 16 18 C 0.07 0.80 3.05 -66.19 -0.20 0.60 16 19 H 0.05 0.59 7.78 -51.93 -0.40 0.18 16 20 C -0.13 -1.40 9.59 37.16 0.36 -1.05 16 21 N -0.53 -7.15 5.10 -231.60 -1.18 -8.33 16 22 C 0.02 0.25 9.12 60.07 0.55 0.80 16 23 C 0.05 0.71 5.77 -2.83 -0.02 0.69 16 24 H 0.05 0.92 7.88 -51.92 -0.41 0.51 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.33 6.72 7.75 -39.29 -0.30 6.41 16 31 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 32 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 33 H 0.08 1.06 7.97 -51.93 -0.41 0.64 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.27 8.10 -51.93 -0.42 -0.15 16 41 H 0.08 1.30 7.77 -51.93 -0.40 0.89 16 42 H 0.05 0.79 7.58 -51.93 -0.39 0.40 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -27.41 327.37 -9.39 -36.80 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -8.06 Total: 4.01 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.07 Total: -14.25 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.17 Total: -47.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.41 -9.39 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.724 kcal (2) G-P(sol) polarization free energy of solvation -27.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds