Wall clock time and date at job start Mon Mar 30 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 H 1.09001 * 109.47358 * 304.24435 * 3 2 1 5 5 C 1.50697 * 109.47231 * 184.24484 * 3 2 1 6 6 H 1.08001 * 120.00204 * 240.00022 * 5 3 2 7 7 C 1.37877 * 120.00133 * 59.99868 * 5 3 2 8 8 N 1.31512 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47008 * 89.99759 * 9 7 5 11 11 H 1.48500 * 109.47321 * 209.99676 * 9 7 5 12 12 H 1.48495 * 109.47019 * 329.99969 * 9 7 5 13 13 N 1.46902 * 109.47472 * 64.24064 * 3 2 1 14 14 C 1.46896 * 111.00229 * 205.88977 * 13 3 2 15 15 C 1.53005 * 109.47177 * 174.70988 * 14 13 3 16 16 H 1.08999 * 110.62549 * 303.35527 * 15 14 13 17 17 C 1.55139 * 110.85699 * 180.14028 * 15 14 13 18 18 C 1.54905 * 101.65351 * 205.89518 * 17 15 14 19 19 H 1.09000 * 110.37735 * 278.24407 * 18 17 15 20 20 C 1.53000 * 110.37440 * 155.90054 * 18 17 15 21 21 N 1.47842 * 104.79465 * 37.07293 * 18 17 15 22 22 C 1.46904 * 110.99900 * 213.63505 * 21 18 17 23 23 C 1.47446 * 108.56802 * 335.90084 * 21 18 17 24 24 H 1.09008 * 109.47088 * 294.93157 * 1 2 3 25 25 H 1.08996 * 109.47160 * 54.93131 * 1 2 3 26 26 H 1.08995 * 109.47446 * 174.93631 * 1 2 3 27 27 H 1.08995 * 109.47261 * 239.99765 * 2 1 3 28 28 H 1.08997 * 109.47221 * 119.99820 * 2 1 3 29 29 H 0.97005 * 119.99975 * 180.02562 * 8 7 5 30 30 H 1.00906 * 110.99303 * 81.93904 * 13 3 2 31 31 H 1.09001 * 109.46752 * 54.71551 * 14 13 3 32 32 H 1.08995 * 109.47626 * 294.71575 * 14 13 3 33 33 H 1.08995 * 110.99186 * 323.99190 * 17 15 14 34 34 H 1.09003 * 110.98524 * 87.80375 * 17 15 14 35 35 H 1.09004 * 109.46658 * 303.17458 * 20 18 17 36 36 H 1.09003 * 109.47112 * 63.17040 * 20 18 17 37 37 H 1.08996 * 109.47074 * 183.17645 * 20 18 17 38 38 H 1.08999 * 109.46884 * 180.71684 * 22 21 18 39 39 H 1.08999 * 109.47350 * 300.71281 * 22 21 18 40 40 H 1.08994 * 109.46955 * 60.71880 * 22 21 18 41 41 H 1.09007 * 109.88598 * 120.39813 * 23 21 18 42 42 H 1.09000 * 109.88855 * 241.58013 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1389 1.8918 0.6765 7 6 4.1584 0.8731 -1.1992 8 7 3.4331 0.3271 -2.1508 9 14 6.0218 0.8741 -1.3293 10 1 6.5629 -0.3552 -0.6957 11 1 6.4182 0.9091 -2.7600 12 1 6.5657 2.0690 -0.6355 13 7 1.6358 2.1049 1.2473 14 6 1.5387 3.5591 1.0637 15 6 0.9903 4.1989 2.3408 16 1 0.0269 3.7632 2.6054 17 6 0.8711 5.7374 2.1805 18 6 0.9810 6.2145 3.6501 19 1 0.0173 6.1247 4.1514 20 6 1.4785 7.6603 3.7050 21 7 1.9697 5.3062 4.2690 22 6 1.6445 5.0566 5.6797 23 6 1.9952 4.0472 3.5020 24 1 -0.3634 0.4332 0.9320 25 1 -0.3633 0.5904 -0.8411 26 1 -0.3634 -1.0236 -0.0907 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8658 -0.0748 -2.9203 30 1 2.2688 1.8768 1.9993 31 1 0.8686 3.7763 0.2319 32 1 2.5272 3.9651 0.8495 33 1 1.6903 6.1320 1.5795 34 1 -0.0929 6.0117 1.7519 35 1 2.4346 7.7354 3.1868 36 1 0.7514 8.3134 3.2224 37 1 1.6042 7.9621 4.7448 38 1 2.3947 4.3957 6.1140 39 1 1.6346 6.0015 6.2230 40 1 0.6632 4.5874 5.7488 41 1 2.9960 3.8744 3.1061 42 1 1.6991 3.2166 4.1427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396697282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:38 Heat of formation + Delta-G solvation = -32.275278 kcal Electronic energy + Delta-G solvation = -18009.278357 eV Core-core repulsion = 15408.490633 eV Total energy + Delta-G solvation = -2600.787725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35527 -37.92729 -34.97594 -33.52904 -32.74596 -31.56489 -28.52879 -27.09722 -26.35898 -24.78976 -23.89187 -21.65929 -21.14312 -20.48591 -18.77306 -17.39412 -16.80952 -16.28570 -15.79601 -15.35530 -15.06780 -14.75417 -14.66883 -14.26163 -13.98309 -13.65816 -13.35245 -13.33079 -13.10413 -13.05125 -12.91421 -12.69218 -12.50974 -12.23678 -12.10013 -12.05137 -11.71777 -11.61412 -11.51905 -11.50511 -11.16488 -10.95387 -10.46973 -9.25687 -9.05573 -8.06025 -6.28203 1.37256 1.38866 1.47854 2.39505 3.05077 3.13429 3.50472 3.74304 3.83206 4.14144 4.30049 4.43833 4.46656 4.51406 4.56656 4.60348 4.67418 4.76167 4.82480 4.82854 4.93065 4.95810 5.00335 5.02723 5.06946 5.12500 5.16940 5.19372 5.41110 5.43123 5.45404 5.51908 5.63696 5.77176 6.04742 6.10790 6.19366 6.22301 6.38577 6.81667 7.01371 7.43281 8.90496 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.005838 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.733396 B = 4794.653198 C = 5351.475532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.559 4.559 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.085 3.915 15 C -0.094 4.094 16 H 0.080 0.920 17 C -0.118 4.118 18 C 0.067 3.933 19 H 0.062 0.938 20 C -0.129 4.129 21 N -0.546 5.546 22 C 0.022 3.978 23 C 0.054 3.946 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.328 0.672 31 H 0.052 0.948 32 H 0.008 0.992 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.054 0.946 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 10.127 11.743 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.045 4.045 15 C -0.114 4.114 16 H 0.099 0.901 17 C -0.156 4.156 18 C -0.040 4.040 19 H 0.080 0.920 20 C -0.187 4.187 21 N -0.271 5.271 22 C -0.126 4.126 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.992 10.159 11.466 16.449 hybrid contribution 1.388 -0.473 -0.537 1.561 sum -4.605 9.686 10.929 15.312 Atomic orbital electron populations 1.21540 0.96348 0.99534 1.00606 1.21357 0.94431 0.98316 1.00006 1.18935 0.91480 0.91562 0.86821 0.98428 1.22155 0.94066 1.37803 1.05802 0.93433 1.25647 1.02091 0.94773 0.95417 1.70004 1.36419 1.38572 1.09961 0.85703 0.81150 0.78449 0.77208 1.19999 1.20808 1.19882 1.60849 1.54502 1.07342 1.08048 1.21670 0.97511 0.88742 0.96605 1.22290 0.98970 0.95742 0.94372 0.90129 1.22800 1.02660 0.93642 0.96507 1.22635 0.93581 0.94116 0.93697 0.91972 1.21656 1.01259 0.93670 1.02069 1.63513 1.48598 1.11904 1.03098 1.22551 0.99407 1.02076 0.88615 1.22726 0.98758 0.91308 0.94624 0.92402 0.95119 0.93707 0.92133 0.95347 0.92865 0.85559 0.92977 0.97408 0.91566 0.89483 0.93219 0.90948 0.92205 0.91456 0.90340 0.95230 0.92749 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.73 71.98 0.70 -4.29 16 2 C -0.10 -4.97 5.45 30.59 0.17 -4.81 16 3 C 0.22 11.15 1.98 44.17 0.09 11.24 16 4 H 0.00 -0.13 7.70 -2.39 -0.02 -0.15 16 5 C -0.56 -30.72 8.47 25.60 0.22 -30.50 16 6 H 0.05 2.60 7.73 -2.91 -0.02 2.58 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.68 -28.37 5.73 -495.45 -2.84 -31.20 16 14 C 0.09 3.19 4.90 86.31 0.42 3.61 16 15 C -0.09 -2.74 3.19 -9.61 -0.03 -2.77 16 16 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.12 -2.89 5.95 31.98 0.19 -2.70 16 18 C 0.07 1.48 3.05 45.39 0.14 1.62 16 19 H 0.06 1.25 7.78 -2.39 -0.02 1.23 16 20 C -0.13 -2.41 9.59 71.98 0.69 -1.72 16 21 N -0.55 -13.76 5.10 -886.64 -4.52 -18.28 16 22 C 0.02 0.44 9.12 127.69 1.16 1.60 16 23 C 0.05 1.55 5.77 86.65 0.50 2.05 16 24 H 0.06 2.20 7.88 -2.38 -0.02 2.18 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 3.31 5.97 -2.39 -0.01 3.30 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.33 13.61 7.75 -89.69 -0.70 12.91 16 31 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 32 H 0.01 0.32 8.04 -2.39 -0.02 0.30 16 33 H 0.07 1.78 7.97 -2.39 -0.02 1.76 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.03 0.57 8.10 -2.39 -0.02 0.55 16 41 H 0.05 1.82 7.77 -2.38 -0.02 1.80 16 42 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 Total: -1.00 -58.60 327.37 -0.14 -58.74 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.26 Total: 22.10 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.69 Total: -25.08 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -7.11 Total: -101.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.60 -0.14 -58.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396697282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.466 kcal (2) G-P(sol) polarization free energy of solvation -58.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds