Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09001 * 109.46870 * 305.76749 * 3 2 1 5 5 C 1.50699 * 109.46809 * 185.76423 * 3 2 1 6 6 H 1.08002 * 119.99852 * 244.46697 * 5 3 2 7 7 C 1.37877 * 119.99884 * 64.46729 * 5 3 2 8 8 N 1.31510 * 119.99773 * 196.68380 * 7 5 3 9 9 Si 1.86798 * 119.99916 * 16.68815 * 7 5 3 10 10 H 1.48505 * 109.47174 * 91.47145 * 9 7 5 11 11 H 1.48501 * 109.46932 * 211.46789 * 9 7 5 12 12 H 1.48497 * 109.47183 * 331.46972 * 9 7 5 13 13 N 1.46902 * 109.46877 * 65.76601 * 3 2 1 14 14 C 1.46902 * 110.99696 * 203.83035 * 13 3 2 15 15 H 1.09000 * 109.46860 * 324.43692 * 14 13 3 16 16 C 1.53003 * 109.46896 * 84.43647 * 14 13 3 17 17 C 1.53001 * 109.46812 * 204.43557 * 14 13 3 18 18 C 1.53116 * 109.52444 * 299.67988 * 17 14 13 19 19 C 1.53036 * 109.27913 * 182.44395 * 18 17 14 20 20 N 1.46839 * 109.52644 * 59.18070 * 19 18 17 21 21 C 1.46851 * 111.19869 * 298.25946 * 20 19 18 22 22 C 1.53037 * 109.52259 * 61.74044 * 21 20 19 23 23 H 1.08999 * 109.46673 * 184.57659 * 1 2 3 24 24 H 1.08996 * 109.47652 * 304.57424 * 1 2 3 25 25 H 1.09001 * 109.46701 * 64.58238 * 1 2 3 26 26 H 1.08995 * 109.47234 * 239.99701 * 2 1 3 27 27 H 1.09000 * 109.46788 * 119.99619 * 2 1 3 28 28 H 0.96999 * 119.99789 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00211 * 79.87849 * 13 3 2 30 30 H 1.08997 * 109.47335 * 62.97662 * 16 14 13 31 31 H 1.09001 * 109.46757 * 182.97683 * 16 14 13 32 32 H 1.08992 * 109.47190 * 302.97325 * 16 14 13 33 33 H 1.08994 * 109.52333 * 59.87672 * 17 14 13 34 34 H 1.09005 * 109.50482 * 302.38608 * 18 17 14 35 35 H 1.09008 * 109.50091 * 62.50269 * 18 17 14 36 36 H 1.09003 * 109.46242 * 299.16407 * 19 18 17 37 37 H 1.09000 * 109.46214 * 179.20208 * 19 18 17 38 38 H 1.00893 * 111.00440 * 174.16178 * 20 19 18 39 39 H 1.08997 * 109.45949 * 301.72452 * 21 20 19 40 40 H 1.08999 * 109.46014 * 181.75399 * 21 20 19 41 41 H 1.08998 * 109.50596 * 180.87938 * 22 21 20 42 42 H 1.09005 * 109.50531 * 60.76187 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5948 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1427 6 1 4.1584 1.8205 0.6594 7 6 4.1236 0.9677 -1.2972 8 7 5.4023 0.6605 -1.3093 9 14 3.0978 0.7576 -2.8441 10 1 3.1660 1.9994 -3.6557 11 1 3.6257 -0.3816 -3.6371 12 1 1.6865 0.4881 -2.4693 13 7 1.6672 2.0937 1.2630 14 6 1.6133 3.5534 1.1068 15 1 2.3925 3.8738 0.4152 16 6 0.2444 3.9570 0.5553 17 6 1.8322 4.2201 2.4664 18 6 0.7336 3.7769 3.4365 19 6 0.9225 4.4937 4.7753 20 7 0.8602 5.9460 4.5676 21 6 1.9350 6.4016 3.6766 22 6 1.7762 5.7418 2.3049 23 1 -0.3632 -1.0244 0.0820 24 1 -0.3634 0.5831 0.8461 25 1 -0.3633 0.4411 -0.9282 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8128 0.3251 -2.1216 29 1 2.2993 1.8325 2.0048 30 1 -0.5307 3.6838 1.2713 31 1 0.2227 5.0341 0.3896 32 1 0.0660 3.4407 -0.3879 33 1 2.8063 3.9313 2.8610 34 1 -0.2420 4.0311 3.0221 35 1 0.7955 2.6993 3.5887 36 1 1.8926 4.2282 5.1957 37 1 0.1335 4.1911 5.4638 38 1 0.8870 6.4387 5.4477 39 1 2.9002 6.1272 4.1021 40 1 1.8812 7.4847 3.5671 41 1 2.5830 6.0680 1.6486 42 1 0.8170 6.0268 1.8728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400754718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -38.603656 kcal Electronic energy + Delta-G solvation = -18522.436951 eV Core-core repulsion = 15921.374807 eV Total energy + Delta-G solvation = -2601.062144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24079 -38.02110 -35.44401 -33.99605 -31.96454 -31.57455 -29.84226 -28.28636 -25.45312 -24.21081 -23.78845 -21.82340 -21.26255 -19.85547 -19.06148 -17.51255 -16.87065 -16.25328 -15.96115 -15.55105 -15.28782 -14.86131 -14.79671 -14.46283 -14.09196 -13.84003 -13.64214 -13.26388 -13.09523 -13.00571 -12.83484 -12.58239 -12.50049 -12.44662 -12.07502 -11.71496 -11.53279 -11.47684 -11.29877 -11.25751 -11.11648 -10.78577 -10.59062 -9.35525 -8.98665 -8.35649 -6.33813 1.30217 1.34493 1.45256 2.32145 3.00060 3.36620 3.53897 3.87736 3.94861 4.10858 4.36329 4.41865 4.47455 4.55605 4.58818 4.60756 4.64211 4.74937 4.81264 4.87828 4.93075 4.97990 4.98725 5.10692 5.14707 5.18433 5.25182 5.32477 5.35119 5.42759 5.47040 5.55839 5.58558 5.69762 5.76261 6.11374 6.14534 6.47121 6.58439 6.69840 6.86261 7.33366 8.80991 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.006637 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.292736 B = 4217.841147 C = 4555.520806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.195 3.805 4 H 0.023 0.977 5 C -0.549 4.549 6 H 0.027 0.973 7 C 0.022 3.978 8 N -0.940 5.940 9 Si 0.924 3.076 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.226 1.226 13 N -0.660 5.660 14 C 0.091 3.909 15 H 0.010 0.990 16 C -0.129 4.129 17 C -0.080 4.080 18 C -0.098 4.098 19 C 0.058 3.942 20 N -0.691 5.691 21 C 0.062 3.938 22 C -0.111 4.111 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.264 0.736 29 H 0.326 0.674 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.087 0.913 38 H 0.351 0.649 39 H 0.021 0.979 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 8.603 8.972 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.085 3.915 4 H 0.041 0.959 5 C -0.588 4.588 6 H 0.046 0.954 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.748 3.252 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.149 1.149 13 N -0.288 5.288 14 C -0.019 4.019 15 H 0.028 0.972 16 C -0.186 4.186 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.071 4.071 20 N -0.323 5.323 21 C -0.067 4.067 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.040 0.960 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.913 8.403 8.272 17.487 hybrid contribution 2.498 -0.186 -0.495 2.554 sum -10.415 8.217 7.777 15.377 Atomic orbital electron populations 1.21639 0.94916 1.00930 1.01503 1.21705 0.95994 0.97502 0.99524 1.19358 0.90681 0.92070 0.89413 0.95908 1.22024 0.93096 1.41767 1.01906 0.95432 1.25782 0.95738 0.93889 1.02252 1.70146 1.14104 1.44700 1.29031 0.86194 0.81954 0.77641 0.79391 1.20592 1.21265 1.14888 1.60890 1.54587 1.06468 1.06878 1.21393 0.96667 0.88289 0.95577 0.97202 1.21801 0.96367 1.00210 1.00251 1.21225 0.98239 0.95653 0.94778 1.21516 0.98571 0.99520 0.93937 1.21958 0.99889 0.87899 0.97354 1.60273 1.48123 1.05236 1.18703 1.21879 0.91834 1.00019 0.93002 1.21659 1.02419 0.93841 0.97023 0.92837 0.91256 0.94263 0.94710 0.93635 0.92709 0.85717 0.91110 0.91757 0.94537 0.94065 0.90871 0.91519 0.96070 0.89501 0.83036 0.96048 0.89384 0.92548 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.86 71.98 0.71 -3.83 16 2 C -0.11 -4.62 4.90 30.60 0.15 -4.47 16 3 C 0.19 8.94 1.33 44.17 0.06 8.99 16 4 H 0.02 1.09 5.69 -2.39 -0.01 1.07 16 5 C -0.55 -30.99 8.64 25.60 0.22 -30.77 16 6 H 0.03 1.73 7.97 -2.91 -0.02 1.71 16 7 C 0.02 1.29 5.31 84.66 0.45 1.74 16 8 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 9 Si 0.92 44.12 25.80 68.60 1.77 45.89 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.23 -9.85 5.57 99.48 0.55 -9.30 16 13 N -0.66 -25.72 4.79 -473.29 -2.27 -27.98 16 14 C 0.09 3.22 2.26 44.92 0.10 3.32 16 15 H 0.01 0.42 7.60 -2.39 -0.02 0.41 16 16 C -0.13 -3.92 8.70 71.98 0.63 -3.29 16 17 C -0.08 -2.36 1.95 -10.71 -0.02 -2.38 16 18 C -0.10 -2.49 4.89 30.65 0.15 -2.34 16 19 C 0.06 1.24 6.55 86.33 0.57 1.81 16 20 N -0.69 -13.73 6.85 -514.02 -3.52 -17.25 16 21 C 0.06 1.32 6.55 86.33 0.57 1.88 16 22 C -0.11 -2.84 5.09 30.65 0.16 -2.68 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 2.27 7.66 -2.39 -0.02 2.25 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.03 1.56 5.07 -2.39 -0.01 1.54 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.33 13.33 7.94 -89.70 -0.71 12.62 16 30 H 0.07 1.97 6.22 -2.39 -0.01 1.96 16 31 H 0.06 1.72 6.54 -2.39 -0.02 1.71 16 32 H 0.04 1.19 7.34 -2.39 -0.02 1.18 16 33 H 0.04 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.07 1.87 6.24 -2.38 -0.01 1.86 16 35 H 0.07 1.81 7.61 -2.38 -0.02 1.79 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.35 5.38 8.90 -89.70 -0.80 4.58 16 39 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.94 6.38 -2.38 -0.02 1.92 16 Total: -1.00 -62.92 309.93 -0.65 -63.57 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.67 Total: 26.39 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.73 Total: -32.03 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -5.48 Total: -103.83 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.77 Total: 45.89 kcal Total: -62.92 -0.65 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400754718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.969 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds