Wall clock time and date at job start Mon Mar 30 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 H 1.09002 * 109.46944 * 55.93117 * 3 2 1 5 5 C 1.50710 * 109.47093 * 175.92983 * 3 2 1 6 6 H 1.07991 * 120.00076 * 119.99993 * 5 3 2 7 7 C 1.37878 * 119.99725 * 300.00171 * 5 3 2 8 8 N 1.31517 * 120.00257 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99720 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46960 * 90.00042 * 9 7 5 11 11 H 1.48502 * 109.46813 * 209.99589 * 9 7 5 12 12 H 1.48490 * 109.47218 * 329.99861 * 9 7 5 13 13 N 1.46903 * 109.47343 * 295.92513 * 3 2 1 14 14 C 1.46903 * 110.99636 * 156.09855 * 13 3 2 15 15 H 1.09002 * 109.47138 * 34.73175 * 14 13 3 16 16 C 1.52998 * 109.47293 * 274.72928 * 14 13 3 17 17 C 1.53001 * 109.46516 * 154.72861 * 14 13 3 18 18 C 1.53122 * 109.52061 * 184.99849 * 17 14 13 19 19 C 1.53036 * 109.27619 * 182.44074 * 18 17 14 20 20 N 1.46846 * 109.52482 * 59.18387 * 19 18 17 21 21 C 1.46842 * 111.19527 * 298.25782 * 20 19 18 22 22 C 1.53037 * 109.52713 * 61.73970 * 21 20 19 23 23 H 1.08997 * 109.47425 * 65.07160 * 1 2 3 24 24 H 1.08997 * 109.47262 * 185.07412 * 1 2 3 25 25 H 1.09006 * 109.46898 * 305.06637 * 1 2 3 26 26 H 1.08999 * 109.47024 * 240.00551 * 2 1 3 27 27 H 1.09004 * 109.47694 * 120.00078 * 2 1 3 28 28 H 0.96998 * 119.99891 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00137 * 280.05671 * 13 3 2 30 30 H 1.09001 * 109.46957 * 185.82183 * 16 14 13 31 31 H 1.08999 * 109.47036 * 305.81811 * 16 14 13 32 32 H 1.08998 * 109.47295 * 65.82642 * 16 14 13 33 33 H 1.08993 * 109.52485 * 305.12672 * 17 14 13 34 34 H 1.09004 * 109.49943 * 62.50475 * 18 17 14 35 35 H 1.08993 * 109.53767 * 302.40796 * 18 17 14 36 36 H 1.08997 * 109.46632 * 299.16553 * 19 18 17 37 37 H 1.09006 * 109.46118 * 179.19876 * 19 18 17 38 38 H 1.00907 * 110.99955 * 62.35009 * 20 19 18 39 39 H 1.08998 * 109.45979 * 181.75924 * 21 20 19 40 40 H 1.08999 * 109.46237 * 301.71960 * 21 20 19 41 41 H 1.09001 * 109.50164 * 180.87744 * 22 21 20 42 42 H 1.08998 * 109.53252 * 60.78265 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6182 1.9769 0.8513 5 6 3.5436 1.4438 0.1009 6 1 4.1369 1.8925 -0.6820 7 6 4.1618 0.8719 1.1926 8 7 3.4392 0.3258 2.1462 9 14 6.0256 0.8728 1.3173 10 1 6.4741 2.1019 2.0197 11 1 6.4714 -0.3224 2.0776 12 1 6.6129 0.8396 -0.0462 13 7 1.6322 2.1061 -1.2456 14 6 1.5813 3.5640 -1.0731 15 1 2.3695 3.8766 -0.3881 16 6 0.2199 3.9625 -0.4998 17 6 1.7833 4.2452 -2.4281 18 6 1.8551 5.7622 -2.2325 19 6 1.9961 6.4413 -3.5967 20 7 0.8455 6.0924 -4.4398 21 6 0.7831 4.6452 -4.6805 22 6 0.6060 3.9124 -3.3487 23 1 -0.3634 0.4331 -0.9319 24 1 -0.3633 -1.0236 0.0909 25 1 -0.3633 0.5905 0.8412 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8741 -0.0762 2.9144 29 1 2.2440 1.8532 -2.0070 30 1 0.1430 5.0494 -0.4684 31 1 -0.5721 3.5604 -1.1315 32 1 0.1190 3.5619 0.5089 33 1 2.7106 3.8917 -2.8788 34 1 2.7171 6.0087 -1.6125 35 1 0.9447 6.1103 -1.7449 36 1 2.9142 6.1037 -4.0774 37 1 2.0331 7.5224 -3.4621 38 1 -0.0151 6.4291 -4.0345 39 1 -0.0609 4.4217 -5.3331 40 1 1.7068 4.3160 -5.1562 41 1 0.5753 2.8374 -3.5262 42 1 -0.3247 4.2303 -2.8787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400754721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:59 Heat of formation + Delta-G solvation = -25.816317 kcal Electronic energy + Delta-G solvation = -18484.945988 eV Core-core repulsion = 15884.438345 eV Total energy + Delta-G solvation = -2600.507643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.19292 -36.36359 -33.82510 -31.66707 -30.73778 -30.11268 -28.25404 -26.02458 -24.02726 -22.86363 -22.53938 -20.91751 -19.37512 -18.87940 -16.64128 -15.72958 -14.94792 -14.89744 -14.62985 -14.26296 -14.08959 -13.43592 -12.91894 -12.76211 -12.61952 -12.30973 -11.97923 -11.78642 -11.57239 -11.35338 -11.28049 -11.13893 -10.94901 -10.68587 -10.63814 -10.35200 -10.14048 -10.06290 -9.94176 -9.55857 -9.44010 -9.01303 -8.37138 -8.27733 -7.21286 -5.99512 -4.12627 3.25203 3.32761 3.35381 4.36706 4.38723 4.85991 4.97638 5.17669 5.24825 5.28182 5.49399 5.50563 5.54302 5.65732 5.88095 5.94281 5.98955 6.10553 6.16144 6.19478 6.26029 6.36356 6.41217 6.50935 6.52805 6.62395 6.71817 6.77465 6.94628 7.06952 7.15116 7.18535 7.38852 7.47156 7.61897 7.78348 8.10658 8.18709 8.36630 8.70111 9.01383 9.55096 11.00200 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.006802 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.899635 B = 4115.573047 C = 4787.232708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.094 3.906 15 H 0.045 0.955 16 C -0.135 4.135 17 C -0.084 4.084 18 C -0.153 4.153 19 C 0.057 3.943 20 N -0.689 5.689 21 C 0.053 3.947 22 C -0.144 4.144 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.325 0.675 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 8.254 -8.656 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.017 4.017 15 H 0.063 0.937 16 C -0.193 4.193 17 C -0.103 4.103 18 C -0.193 4.193 19 C -0.072 4.072 20 N -0.317 5.317 21 C -0.076 4.076 22 C -0.183 4.183 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.579 8.200 -8.960 13.366 hybrid contribution 1.844 -0.225 1.241 2.233 sum -3.736 7.975 -7.719 11.711 Atomic orbital electron populations 1.21672 0.99023 0.98126 1.00322 1.21489 0.92046 0.99378 1.01553 1.19163 0.92383 0.91030 0.86655 0.95024 1.21886 0.92866 1.37779 1.05789 0.93031 1.24931 0.97857 0.95042 0.95694 1.69879 1.34840 1.38089 1.09546 0.86684 0.86248 0.77522 0.78061 1.20811 1.21143 1.20045 1.60962 1.56371 1.04830 1.09017 1.21299 0.96407 0.89898 0.94071 0.93745 1.21853 0.97805 0.98708 1.00949 1.21309 0.98264 0.94230 0.96476 1.22351 1.02381 0.96242 0.98291 1.22001 0.94431 0.99369 0.91437 1.60723 1.06403 1.14272 1.50282 1.22072 1.01948 0.86924 0.96681 1.22242 0.98483 1.01905 0.95652 0.93489 0.95817 0.94556 0.95222 0.89314 0.92922 0.85854 0.93927 0.92603 0.93150 0.91763 0.91663 0.91739 0.91236 0.91253 0.84632 0.91251 0.91334 0.90517 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.73 37.15 0.36 -2.40 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.25 1.80 -68.86 -0.12 5.13 16 4 H 0.03 0.87 7.19 -51.93 -0.37 0.49 16 5 C -0.54 -14.57 8.21 -34.43 -0.28 -14.85 16 6 H 0.05 1.38 7.76 -52.49 -0.41 0.97 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.03 11.30 55.43 0.63 -24.40 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -13.77 5.08 -100.94 -0.51 -14.28 16 14 C 0.09 1.69 2.20 -67.71 -0.15 1.54 16 15 H 0.04 0.94 7.59 -51.93 -0.39 0.55 16 16 C -0.14 -2.24 8.56 37.16 0.32 -1.93 16 17 C -0.08 -1.22 1.95 -90.50 -0.18 -1.40 16 18 C -0.15 -1.95 5.18 -26.65 -0.14 -2.09 16 19 C 0.06 0.65 6.55 -3.84 -0.03 0.63 16 20 N -0.69 -7.75 6.87 -113.82 -0.78 -8.53 16 21 C 0.05 0.61 6.55 -3.84 -0.03 0.59 16 22 C -0.14 -1.88 4.80 -26.65 -0.13 -2.00 16 23 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 6.61 7.99 -39.30 -0.31 6.30 16 30 H 0.04 0.61 6.27 -51.93 -0.33 0.29 16 31 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 32 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 33 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.80 6.35 -51.93 -0.33 0.47 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.34 3.44 8.86 -39.29 -0.35 3.10 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.09 7.84 -51.93 -0.41 0.69 16 42 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -26.91 316.05 -9.15 -36.07 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.62 Total: 7.96 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.61 Total: -17.73 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.67 Total: -47.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.91 -9.15 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400754721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.249 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds