Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 H 1.09002 * 109.46944 * 55.93117 * 3 2 1 5 5 C 1.50710 * 109.47093 * 175.92983 * 3 2 1 6 6 H 1.07991 * 120.00076 * 119.99993 * 5 3 2 7 7 C 1.37878 * 119.99725 * 300.00171 * 5 3 2 8 8 N 1.31517 * 120.00257 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99720 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46960 * 90.00042 * 9 7 5 11 11 H 1.48502 * 109.46813 * 209.99589 * 9 7 5 12 12 H 1.48490 * 109.47218 * 329.99861 * 9 7 5 13 13 N 1.46903 * 109.47343 * 295.92513 * 3 2 1 14 14 C 1.46903 * 110.99636 * 156.09855 * 13 3 2 15 15 H 1.09002 * 109.47138 * 34.73175 * 14 13 3 16 16 C 1.52998 * 109.47293 * 274.72928 * 14 13 3 17 17 C 1.53001 * 109.46516 * 154.72861 * 14 13 3 18 18 C 1.53122 * 109.52061 * 184.99849 * 17 14 13 19 19 C 1.53036 * 109.27619 * 182.44074 * 18 17 14 20 20 N 1.46846 * 109.52482 * 59.18387 * 19 18 17 21 21 C 1.46842 * 111.19527 * 298.25782 * 20 19 18 22 22 C 1.53037 * 109.52713 * 61.73970 * 21 20 19 23 23 H 1.08997 * 109.47425 * 65.07160 * 1 2 3 24 24 H 1.08997 * 109.47262 * 185.07412 * 1 2 3 25 25 H 1.09006 * 109.46898 * 305.06637 * 1 2 3 26 26 H 1.08999 * 109.47024 * 240.00551 * 2 1 3 27 27 H 1.09004 * 109.47694 * 120.00078 * 2 1 3 28 28 H 0.96998 * 119.99891 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00137 * 280.05671 * 13 3 2 30 30 H 1.09001 * 109.46957 * 185.82183 * 16 14 13 31 31 H 1.08999 * 109.47036 * 305.81811 * 16 14 13 32 32 H 1.08998 * 109.47295 * 65.82642 * 16 14 13 33 33 H 1.08993 * 109.52485 * 305.12672 * 17 14 13 34 34 H 1.09004 * 109.49943 * 62.50475 * 18 17 14 35 35 H 1.08993 * 109.53767 * 302.40796 * 18 17 14 36 36 H 1.08997 * 109.46632 * 299.16553 * 19 18 17 37 37 H 1.09006 * 109.46118 * 179.19876 * 19 18 17 38 38 H 1.00907 * 110.99955 * 62.35009 * 20 19 18 39 39 H 1.08998 * 109.45979 * 181.75924 * 21 20 19 40 40 H 1.08999 * 109.46237 * 301.71960 * 21 20 19 41 41 H 1.09001 * 109.50164 * 180.87744 * 22 21 20 42 42 H 1.08998 * 109.53252 * 60.78265 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6182 1.9769 0.8513 5 6 3.5436 1.4438 0.1009 6 1 4.1369 1.8925 -0.6820 7 6 4.1618 0.8719 1.1926 8 7 3.4392 0.3258 2.1462 9 14 6.0256 0.8728 1.3173 10 1 6.4741 2.1019 2.0197 11 1 6.4714 -0.3224 2.0776 12 1 6.6129 0.8396 -0.0462 13 7 1.6322 2.1061 -1.2456 14 6 1.5813 3.5640 -1.0731 15 1 2.3695 3.8766 -0.3881 16 6 0.2199 3.9625 -0.4998 17 6 1.7833 4.2452 -2.4281 18 6 1.8551 5.7622 -2.2325 19 6 1.9961 6.4413 -3.5967 20 7 0.8455 6.0924 -4.4398 21 6 0.7831 4.6452 -4.6805 22 6 0.6060 3.9124 -3.3487 23 1 -0.3634 0.4331 -0.9319 24 1 -0.3633 -1.0236 0.0909 25 1 -0.3633 0.5905 0.8412 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8741 -0.0762 2.9144 29 1 2.2440 1.8532 -2.0070 30 1 0.1430 5.0494 -0.4684 31 1 -0.5721 3.5604 -1.1315 32 1 0.1190 3.5619 0.5089 33 1 2.7106 3.8917 -2.8788 34 1 2.7171 6.0087 -1.6125 35 1 0.9447 6.1103 -1.7449 36 1 2.9142 6.1037 -4.0774 37 1 2.0331 7.5224 -3.4621 38 1 -0.0151 6.4291 -4.0345 39 1 -0.0609 4.4217 -5.3331 40 1 1.7068 4.3160 -5.1562 41 1 0.5753 2.8374 -3.5262 42 1 -0.3247 4.2303 -2.8787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400754721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -43.253754 kcal Electronic energy + Delta-G solvation = -18485.702133 eV Core-core repulsion = 15884.438345 eV Total energy + Delta-G solvation = -2601.263787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36571 -37.96262 -35.42894 -33.60173 -31.81962 -31.52690 -29.69651 -27.93438 -25.41852 -24.37647 -23.72608 -22.11618 -21.27002 -20.16527 -18.67444 -16.89256 -16.72808 -16.34216 -15.90441 -15.56392 -15.31708 -15.03521 -14.63415 -14.21990 -13.87079 -13.66297 -13.34127 -13.19212 -13.06308 -13.03175 -12.89532 -12.64272 -12.53974 -12.41916 -12.14207 -11.78662 -11.62254 -11.51743 -11.37650 -11.24644 -11.11403 -10.87099 -10.47243 -9.25125 -8.99834 -8.06812 -6.29608 1.34048 1.36052 1.45029 2.37148 3.11913 3.45902 3.61138 3.81235 3.99883 4.13451 4.31616 4.43906 4.48827 4.54530 4.60532 4.62505 4.75463 4.78393 4.86349 4.92616 4.99443 5.03320 5.05106 5.11541 5.17429 5.20766 5.28354 5.35739 5.41252 5.42864 5.50751 5.61663 5.65458 5.78534 6.11769 6.14205 6.21250 6.41566 6.56888 6.85630 7.03166 7.42152 8.88879 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.006802 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.899635 B = 4115.573047 C = 4787.232708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.558 4.558 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.669 5.669 14 C 0.093 3.907 15 H 0.006 0.994 16 C -0.126 4.126 17 C -0.077 4.077 18 C -0.148 4.148 19 C 0.063 3.937 20 N -0.687 5.687 21 C 0.059 3.941 22 C -0.135 4.135 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.262 0.738 29 H 0.325 0.675 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.346 0.654 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 9.251 -10.116 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.598 4.598 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.195 1.195 13 N -0.298 5.298 14 C -0.017 4.017 15 H 0.025 0.975 16 C -0.184 4.184 17 C -0.096 4.096 18 C -0.187 4.187 19 C -0.067 4.067 20 N -0.316 5.316 21 C -0.070 4.070 22 C -0.174 4.174 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.084 9.210 -10.432 15.188 hybrid contribution 1.988 -0.513 1.703 2.667 sum -4.096 8.697 -8.729 12.985 Atomic orbital electron populations 1.21519 0.96313 0.99371 1.00602 1.21353 0.94446 0.98490 0.99852 1.18898 0.91042 0.91320 0.87129 0.98513 1.22190 0.94293 1.37546 1.05724 0.93593 1.25656 1.02043 0.94844 0.95486 1.70008 1.36404 1.38664 1.09939 0.85723 0.81250 0.77543 0.78117 1.20511 1.20666 1.19546 1.60916 1.55559 1.06212 1.07122 1.21359 0.96129 0.88633 0.95565 0.97544 1.21770 0.96982 1.00235 0.99393 1.21211 0.98510 0.95357 0.94491 1.22316 1.02372 0.94645 0.99391 1.21970 0.94333 1.00197 0.90170 1.60718 1.06817 1.13874 1.50211 1.22025 1.02388 0.86878 0.95732 1.22164 0.97592 1.01414 0.96217 0.92240 0.93880 0.95312 0.95429 0.92370 0.92918 0.85898 0.91481 0.91497 0.95733 0.93171 0.92598 0.90948 0.91849 0.89473 0.83589 0.89631 0.91899 0.91714 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.73 71.98 0.70 -4.20 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.82 16 3 C 0.23 11.27 1.80 44.17 0.08 11.35 16 4 H 0.00 -0.17 7.19 -2.39 -0.02 -0.19 16 5 C -0.56 -30.63 8.21 25.60 0.21 -30.42 16 6 H 0.05 2.51 7.76 -2.92 -0.02 2.49 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.73 11.30 21.45 0.24 -52.49 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.67 -27.33 5.08 -473.27 -2.40 -29.74 16 14 C 0.09 3.39 2.20 44.91 0.10 3.49 16 15 H 0.01 0.28 7.59 -2.39 -0.02 0.27 16 16 C -0.13 -4.10 8.56 71.98 0.62 -3.49 16 17 C -0.08 -2.18 1.95 -10.71 -0.02 -2.20 16 18 C -0.15 -3.52 5.18 30.65 0.16 -3.37 16 19 C 0.06 1.28 6.55 86.33 0.57 1.85 16 20 N -0.69 -13.42 6.87 -514.02 -3.53 -16.95 16 21 C 0.06 1.22 6.55 86.33 0.57 1.78 16 22 C -0.13 -3.26 4.80 30.65 0.15 -3.11 16 23 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 3.20 5.97 -2.39 -0.01 3.18 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.32 13.33 7.99 -89.70 -0.72 12.61 16 30 H 0.07 1.83 6.27 -2.39 -0.01 1.82 16 31 H 0.07 2.03 6.65 -2.39 -0.02 2.01 16 32 H 0.02 0.90 7.52 -2.39 -0.02 0.88 16 33 H 0.05 1.57 8.02 -2.39 -0.02 1.55 16 34 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.07 1.62 6.35 -2.39 -0.02 1.60 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.35 5.87 8.86 -89.69 -0.79 5.07 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 42 H 0.07 1.60 6.34 -2.39 -0.02 1.58 16 Total: -1.00 -58.41 316.05 -0.45 -58.86 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.52 Total: 25.96 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.74 Total: -31.59 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.69 Total: -99.17 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -58.41 -0.45 -58.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400754721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.610 kcal (2) G-P(sol) polarization free energy of solvation -58.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds