Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 H 1.09001 * 109.47354 * 175.18421 * 3 2 1 5 5 C 1.50701 * 109.46911 * 55.18590 * 3 2 1 6 6 H 1.08002 * 120.00139 * 239.99593 * 5 3 2 7 7 C 1.37877 * 119.99931 * 60.00314 * 5 3 2 8 8 N 1.31515 * 119.99987 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00114 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46851 * 89.99929 * 9 7 5 11 11 H 1.48497 * 109.47180 * 209.99650 * 9 7 5 12 12 H 1.48502 * 109.46916 * 330.00374 * 9 7 5 13 13 N 1.46895 * 109.47048 * 295.18693 * 3 2 1 14 14 C 1.46896 * 111.00300 * 273.77575 * 13 3 2 15 15 H 1.09000 * 109.46885 * 34.92083 * 14 13 3 16 16 C 1.53009 * 109.46959 * 274.92360 * 14 13 3 17 17 C 1.52996 * 109.47624 * 154.92293 * 14 13 3 18 18 C 1.53117 * 109.52249 * 299.68665 * 17 14 13 19 19 C 1.53036 * 109.27972 * 182.44196 * 18 17 14 20 20 N 1.46845 * 109.52791 * 59.17194 * 19 18 17 21 21 C 1.46850 * 111.19803 * 298.26374 * 20 19 18 22 22 C 1.53035 * 109.52460 * 61.74091 * 21 20 19 23 23 H 1.08992 * 109.47376 * 177.20166 * 1 2 3 24 24 H 1.09002 * 109.46967 * 57.19895 * 1 2 3 25 25 H 1.08999 * 109.46628 * 297.20440 * 1 2 3 26 26 H 1.08999 * 109.46779 * 120.00607 * 2 1 3 27 27 H 1.08997 * 109.46671 * 239.99674 * 2 1 3 28 28 H 0.97005 * 120.00022 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99985 * 37.73297 * 13 3 2 30 30 H 1.09004 * 109.46855 * 59.99733 * 16 14 13 31 31 H 1.09005 * 109.46870 * 179.97438 * 16 14 13 32 32 H 1.09000 * 109.47096 * 299.99594 * 16 14 13 33 33 H 1.09007 * 109.52320 * 59.87290 * 17 14 13 34 34 H 1.09000 * 109.49902 * 302.37935 * 18 17 14 35 35 H 1.08998 * 109.50369 * 62.49615 * 18 17 14 36 36 H 1.09006 * 109.45834 * 299.15467 * 19 18 17 37 37 H 1.08995 * 109.46043 * 179.19685 * 19 18 17 38 38 H 1.00894 * 110.99862 * 174.16172 * 20 19 18 39 39 H 1.08999 * 109.46066 * 301.72303 * 21 20 19 40 40 H 1.08998 * 109.45739 * 181.75476 * 21 20 19 41 41 H 1.09001 * 109.50605 * 180.88165 * 22 21 20 42 42 H 1.09000 * 109.50376 * 60.75712 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1267 1.4436 0.0863 5 6 1.4428 2.1864 1.1665 6 1 0.8327 3.0608 0.9941 7 6 1.6753 1.7509 2.4539 8 7 2.4179 0.6860 2.6638 9 14 0.9355 2.6735 3.8999 10 1 -0.4014 2.1091 4.2155 11 1 1.8231 2.5344 5.0823 12 1 0.7965 4.1104 3.5515 13 7 1.6477 2.1005 -1.2533 14 6 2.6340 1.8476 -2.3121 15 1 3.0402 0.8426 -2.1976 16 6 3.7671 2.8706 -2.2084 17 6 1.9582 1.9719 -3.6790 18 6 0.8291 0.9433 -3.7870 19 6 0.1970 1.0310 -5.1780 20 7 1.2197 0.7708 -6.1991 21 6 2.2907 1.7740 -6.1456 22 6 2.9854 1.7084 -4.7836 23 1 -0.3634 -1.0263 -0.0502 24 1 -0.3633 0.5567 -0.8638 25 1 -0.3632 0.4698 0.9140 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 2.5811 0.3794 3.5695 29 1 0.7255 1.8095 -1.5411 30 1 4.2486 2.7820 -1.2345 31 1 4.4993 2.6826 -2.9938 32 1 3.3609 3.8756 -2.3229 33 1 1.5497 2.9760 -3.7935 34 1 1.2326 -0.0575 -3.6331 35 1 0.0732 1.1519 -3.0299 36 1 -0.2186 2.0279 -5.3258 37 1 -0.5980 0.2902 -5.2629 38 1 0.8089 0.7291 -7.1197 39 1 1.8654 2.7674 -6.2889 40 1 3.0165 1.5727 -6.9335 41 1 3.7701 2.4637 -4.7385 42 1 3.4228 0.7196 -4.6454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400754722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -18.514118 kcal Electronic energy + Delta-G solvation = -18551.978864 eV Core-core repulsion = 15951.787868 eV Total energy + Delta-G solvation = -2600.190996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07530 -36.54783 -33.94862 -31.60899 -30.79167 -30.18351 -28.10926 -26.06003 -24.01400 -23.18279 -22.59443 -20.47201 -19.43503 -18.89394 -16.81506 -15.96302 -15.07156 -14.72965 -14.57517 -14.17852 -13.77115 -13.54639 -13.24701 -12.82860 -12.60402 -12.47749 -12.19968 -11.83740 -11.45925 -11.39346 -11.08034 -10.96069 -10.92497 -10.72978 -10.49430 -10.35865 -10.18914 -9.91395 -9.79507 -9.60136 -9.41777 -8.86606 -8.49662 -8.28562 -7.10049 -5.91851 -3.93009 3.35091 3.41974 3.46469 4.18922 4.48532 4.91833 4.93177 4.99599 5.28914 5.37230 5.39724 5.48397 5.51933 5.65194 5.80436 5.84804 5.94828 6.02097 6.15193 6.20794 6.27467 6.29302 6.38955 6.42565 6.55723 6.59604 6.63231 6.74035 6.93453 6.96483 7.00546 7.31929 7.35842 7.38537 7.56060 7.78105 7.96866 8.38174 8.67198 8.73190 9.13192 9.70655 11.15120 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038465 B = 0.005945 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.750352 B = 4708.591444 C = 5003.978453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.090 3.910 15 H 0.034 0.966 16 C -0.136 4.136 17 C -0.087 4.087 18 C -0.116 4.116 19 C 0.060 3.940 20 N -0.691 5.691 21 C 0.059 3.941 22 C -0.112 4.112 23 H 0.021 0.979 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.010 0.990 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.337 0.663 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 0.585 -14.898 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.021 4.021 15 H 0.051 0.949 16 C -0.193 4.193 17 C -0.106 4.106 18 C -0.154 4.154 19 C -0.069 4.069 20 N -0.322 5.322 21 C -0.070 4.070 22 C -0.150 4.150 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.774 0.649 -14.165 14.201 hybrid contribution -1.026 0.203 0.306 1.090 sum -1.800 0.853 -13.858 14.001 Atomic orbital electron populations 1.21564 0.97842 0.97821 1.01166 1.22096 0.94836 1.01323 1.00158 1.19198 0.95818 0.88390 0.85773 0.94999 1.21092 1.30285 1.11348 0.89726 0.92191 1.24911 0.95614 0.95202 0.98690 1.69887 1.39077 1.24022 1.20722 0.86603 0.78849 0.80342 0.82230 1.20936 1.21491 1.19986 1.60930 1.03760 1.63251 1.03643 1.21412 0.93803 0.96852 0.90013 0.94850 1.21804 0.97245 0.99365 1.00933 1.21340 0.95442 0.98955 0.94855 1.21694 0.98181 1.00140 0.95362 1.21917 0.93409 0.99039 0.92551 1.60280 1.13404 1.50594 1.07922 1.21930 0.93967 0.92764 0.98381 1.21674 0.97811 1.02308 0.93188 0.95958 0.95200 0.91733 0.89036 0.97123 0.93226 0.85353 0.92492 0.93786 0.92787 0.91257 0.91337 0.91150 0.95375 0.91098 0.84584 0.95468 0.91217 0.91299 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.39 37.16 0.35 -2.37 16 2 C -0.14 -3.42 5.50 -26.73 -0.15 -3.57 16 3 C 0.22 5.35 2.13 -68.87 -0.15 5.21 16 4 H 0.03 0.88 7.12 -51.93 -0.37 0.52 16 5 C -0.49 -13.22 7.41 -34.44 -0.26 -13.47 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.53 11.37 55.43 0.63 -24.90 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.38 6.04 -100.96 -0.61 -14.99 16 14 C 0.09 1.61 2.03 -67.71 -0.14 1.47 16 15 H 0.03 0.66 7.19 -51.93 -0.37 0.28 16 16 C -0.14 -2.33 9.05 37.16 0.34 -1.99 16 17 C -0.09 -1.28 1.97 -90.50 -0.18 -1.46 16 18 C -0.12 -1.65 5.09 -26.65 -0.14 -1.79 16 19 C 0.06 0.71 6.55 -3.84 -0.03 0.69 16 20 N -0.69 -7.76 6.85 -113.82 -0.78 -8.53 16 21 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 22 C -0.11 -1.42 4.95 -26.65 -0.13 -1.55 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.58 5.99 -51.93 -0.31 0.27 16 25 H 0.06 1.52 7.17 -51.93 -0.37 1.15 16 26 H 0.09 2.44 6.21 -51.93 -0.32 2.12 16 27 H 0.01 0.23 7.47 -51.93 -0.39 -0.16 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.56 4.03 -39.29 -0.16 6.40 16 30 H 0.06 1.10 7.45 -51.93 -0.39 0.71 16 31 H 0.04 0.63 6.49 -51.93 -0.34 0.30 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.06 6.00 -51.93 -0.31 0.75 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.34 3.03 8.90 -39.29 -0.35 2.68 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -27.97 311.01 -9.06 -37.02 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.37 Total: 6.98 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.59 Total: -16.77 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.76 Total: -48.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.97 -9.06 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400754722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.511 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds