Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 H 1.09001 * 109.47354 * 175.18421 * 3 2 1 5 5 C 1.50701 * 109.46911 * 55.18590 * 3 2 1 6 6 H 1.08002 * 120.00139 * 239.99593 * 5 3 2 7 7 C 1.37877 * 119.99931 * 60.00314 * 5 3 2 8 8 N 1.31515 * 119.99987 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00114 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46851 * 89.99929 * 9 7 5 11 11 H 1.48497 * 109.47180 * 209.99650 * 9 7 5 12 12 H 1.48502 * 109.46916 * 330.00374 * 9 7 5 13 13 N 1.46895 * 109.47048 * 295.18693 * 3 2 1 14 14 C 1.46896 * 111.00300 * 273.77575 * 13 3 2 15 15 H 1.09000 * 109.46885 * 34.92083 * 14 13 3 16 16 C 1.53009 * 109.46959 * 274.92360 * 14 13 3 17 17 C 1.52996 * 109.47624 * 154.92293 * 14 13 3 18 18 C 1.53117 * 109.52249 * 299.68665 * 17 14 13 19 19 C 1.53036 * 109.27972 * 182.44196 * 18 17 14 20 20 N 1.46845 * 109.52791 * 59.17194 * 19 18 17 21 21 C 1.46850 * 111.19803 * 298.26374 * 20 19 18 22 22 C 1.53035 * 109.52460 * 61.74091 * 21 20 19 23 23 H 1.08992 * 109.47376 * 177.20166 * 1 2 3 24 24 H 1.09002 * 109.46967 * 57.19895 * 1 2 3 25 25 H 1.08999 * 109.46628 * 297.20440 * 1 2 3 26 26 H 1.08999 * 109.46779 * 120.00607 * 2 1 3 27 27 H 1.08997 * 109.46671 * 239.99674 * 2 1 3 28 28 H 0.97005 * 120.00022 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99985 * 37.73297 * 13 3 2 30 30 H 1.09004 * 109.46855 * 59.99733 * 16 14 13 31 31 H 1.09005 * 109.46870 * 179.97438 * 16 14 13 32 32 H 1.09000 * 109.47096 * 299.99594 * 16 14 13 33 33 H 1.09007 * 109.52320 * 59.87290 * 17 14 13 34 34 H 1.09000 * 109.49902 * 302.37935 * 18 17 14 35 35 H 1.08998 * 109.50369 * 62.49615 * 18 17 14 36 36 H 1.09006 * 109.45834 * 299.15467 * 19 18 17 37 37 H 1.08995 * 109.46043 * 179.19685 * 19 18 17 38 38 H 1.00894 * 110.99862 * 174.16172 * 20 19 18 39 39 H 1.08999 * 109.46066 * 301.72303 * 21 20 19 40 40 H 1.08998 * 109.45739 * 181.75476 * 21 20 19 41 41 H 1.09001 * 109.50605 * 180.88165 * 22 21 20 42 42 H 1.09000 * 109.50376 * 60.75712 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1267 1.4436 0.0863 5 6 1.4428 2.1864 1.1665 6 1 0.8327 3.0608 0.9941 7 6 1.6753 1.7509 2.4539 8 7 2.4179 0.6860 2.6638 9 14 0.9355 2.6735 3.8999 10 1 -0.4014 2.1091 4.2155 11 1 1.8231 2.5344 5.0823 12 1 0.7965 4.1104 3.5515 13 7 1.6477 2.1005 -1.2533 14 6 2.6340 1.8476 -2.3121 15 1 3.0402 0.8426 -2.1976 16 6 3.7671 2.8706 -2.2084 17 6 1.9582 1.9719 -3.6790 18 6 0.8291 0.9433 -3.7870 19 6 0.1970 1.0310 -5.1780 20 7 1.2197 0.7708 -6.1991 21 6 2.2907 1.7740 -6.1456 22 6 2.9854 1.7084 -4.7836 23 1 -0.3634 -1.0263 -0.0502 24 1 -0.3633 0.5567 -0.8638 25 1 -0.3632 0.4698 0.9140 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 2.5811 0.3794 3.5695 29 1 0.7255 1.8095 -1.5411 30 1 4.2486 2.7820 -1.2345 31 1 4.4993 2.6826 -2.9938 32 1 3.3609 3.8756 -2.3229 33 1 1.5497 2.9760 -3.7935 34 1 1.2326 -0.0575 -3.6331 35 1 0.0732 1.1519 -3.0299 36 1 -0.2186 2.0279 -5.3258 37 1 -0.5980 0.2902 -5.2629 38 1 0.8089 0.7291 -7.1197 39 1 1.8654 2.7674 -6.2889 40 1 3.0165 1.5727 -6.9335 41 1 3.7701 2.4637 -4.7385 42 1 3.4228 0.7196 -4.6454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400754722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -37.183241 kcal Electronic energy + Delta-G solvation = -18552.788418 eV Core-core repulsion = 15951.787868 eV Total energy + Delta-G solvation = -2601.000550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28899 -38.09630 -35.53058 -33.49536 -31.82608 -31.63891 -29.65217 -27.99504 -25.52757 -24.78532 -23.65346 -21.92297 -20.73847 -20.55211 -18.23361 -17.57893 -16.79202 -16.54435 -15.60287 -15.51457 -15.00392 -14.87827 -14.79199 -14.43788 -14.06401 -13.96977 -13.79291 -13.20831 -12.96838 -12.81574 -12.67846 -12.54254 -12.47545 -12.32802 -12.08507 -11.95001 -11.76079 -11.47232 -11.41040 -11.16267 -10.93626 -10.82918 -10.41053 -9.34851 -8.86466 -8.03561 -6.12047 1.42653 1.44026 1.54161 2.46603 3.24913 3.34405 3.61309 3.82589 3.88914 4.06502 4.32249 4.44442 4.47120 4.48228 4.54623 4.58619 4.67570 4.73477 4.78306 4.83771 4.87040 4.93412 5.01313 5.07654 5.08279 5.19084 5.23497 5.30431 5.41120 5.45965 5.47238 5.56675 5.68548 5.75446 5.90581 6.10917 6.36448 6.58441 6.75666 6.94219 7.04225 7.56182 9.01820 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038465 B = 0.005945 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.750352 B = 4708.591444 C = 5003.978453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C 0.224 3.776 4 H -0.006 1.006 5 C -0.498 4.498 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.685 5.685 14 C 0.089 3.911 15 H 0.013 0.987 16 C -0.130 4.130 17 C -0.078 4.078 18 C -0.115 4.115 19 C 0.065 3.935 20 N -0.699 5.699 21 C 0.062 3.938 22 C -0.109 4.109 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.332 0.668 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.353 0.647 39 H 0.034 0.966 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 1.121 -16.635 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.537 4.537 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.318 5.318 14 C -0.021 4.021 15 H 0.031 0.969 16 C -0.188 4.188 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.064 4.064 20 N -0.332 5.332 21 C -0.068 4.068 22 C -0.147 4.147 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.172 0.828 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.710 1.188 -15.930 16.065 hybrid contribution -0.689 0.025 0.813 1.066 sum -2.399 1.214 -15.117 15.354 Atomic orbital electron populations 1.21440 0.95879 0.99279 1.00790 1.21929 0.96492 1.00222 0.98979 1.18905 0.93287 0.89194 0.87046 0.98854 1.21304 1.30208 1.11233 0.90911 0.93103 1.25605 0.95961 0.95916 1.01083 1.70024 1.40004 1.25160 1.21113 0.85661 0.78263 0.79184 0.79134 1.20145 1.21324 1.19697 1.60833 1.04806 1.62771 1.03403 1.21493 0.93582 0.95942 0.91103 0.96858 1.21761 0.97491 0.99283 1.00250 1.21243 0.95990 0.99151 0.93280 1.21648 0.97731 0.98879 0.97012 1.21831 0.93588 0.99855 0.91114 1.60231 1.13438 1.50788 1.08721 1.21919 0.94215 0.93137 0.97480 1.21652 0.97561 1.01929 0.93580 0.93817 0.93278 0.94041 0.92205 0.96179 0.93300 0.84702 0.95602 0.90789 0.92463 0.91184 0.92994 0.92151 0.94696 0.89976 0.82810 0.94750 0.89360 0.90311 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.39 71.98 0.68 -4.27 16 2 C -0.14 -6.58 5.50 30.59 0.17 -6.41 16 3 C 0.22 11.44 2.13 44.17 0.09 11.54 16 4 H -0.01 -0.38 7.12 -2.39 -0.02 -0.39 16 5 C -0.50 -27.60 7.41 25.60 0.19 -27.41 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.68 5.28 84.65 0.45 1.13 16 8 N -0.92 -53.73 11.37 21.45 0.24 -53.49 16 9 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.68 -29.11 6.04 -473.32 -2.86 -31.97 16 14 C 0.09 3.20 2.03 44.92 0.09 3.29 16 15 H 0.01 0.54 7.19 -2.39 -0.02 0.52 16 16 C -0.13 -4.46 9.05 71.99 0.65 -3.81 16 17 C -0.08 -2.18 1.97 -10.71 -0.02 -2.20 16 18 C -0.11 -3.11 5.09 30.65 0.16 -2.96 16 19 C 0.07 1.39 6.55 86.33 0.57 1.95 16 20 N -0.70 -13.63 6.85 -514.01 -3.52 -17.15 16 21 C 0.06 1.16 6.55 86.32 0.57 1.73 16 22 C -0.11 -2.54 4.95 30.65 0.15 -2.39 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.86 5.99 -2.39 -0.01 1.85 16 25 H 0.04 1.94 7.17 -2.39 -0.02 1.92 16 26 H 0.06 3.28 6.21 -2.39 -0.01 3.27 16 27 H 0.02 0.89 7.47 -2.39 -0.02 0.88 16 28 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 29 H 0.33 13.25 4.03 -89.70 -0.36 12.89 16 30 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 31 H 0.07 2.05 6.49 -2.38 -0.02 2.04 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.74 6.00 -2.39 -0.01 1.72 16 36 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.35 5.16 8.90 -89.70 -0.80 4.36 16 39 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.67 6.58 -2.39 -0.02 1.66 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -60.76 311.01 -0.54 -61.30 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.17 Total: 24.63 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.73 Total: -29.83 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -6.14 Total: -102.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.76 -0.54 -61.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400754722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.118 kcal (2) G-P(sol) polarization free energy of solvation -60.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds