Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 H 1.08996 * 109.46777 * 303.02225 * 3 2 1 5 5 C 1.50692 * 109.47494 * 183.01819 * 3 2 1 6 6 H 1.08001 * 120.00286 * 245.20632 * 5 3 2 7 7 C 1.37881 * 120.00159 * 65.19900 * 5 3 2 8 8 N 1.31519 * 119.99433 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00368 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47227 * 90.00107 * 9 7 5 11 11 H 1.48499 * 109.47409 * 209.99997 * 9 7 5 12 12 H 1.48498 * 109.47281 * 330.00439 * 9 7 5 13 13 N 1.46898 * 109.47053 * 63.01716 * 3 2 1 14 14 C 1.46960 * 111.00212 * 84.10658 * 13 3 2 15 15 H 1.09003 * 109.48590 * 63.19669 * 14 13 3 16 16 C 1.53006 * 109.48556 * 303.16008 * 14 13 3 17 17 C 1.53048 * 109.36966 * 183.18901 * 14 13 3 18 18 N 1.46956 * 109.36250 * 301.60013 * 17 14 13 19 19 C 1.46958 * 110.88274 * 59.32071 * 18 17 14 20 20 H 1.08998 * 109.49072 * 60.66203 * 19 18 17 21 21 C 1.52999 * 109.49091 * 180.70974 * 19 18 17 22 22 C 1.46956 * 111.00006 * 207.90698 * 13 3 2 23 23 H 1.09001 * 109.49130 * 296.77502 * 22 13 3 24 24 C 1.52994 * 109.49110 * 56.84849 * 22 13 3 25 25 H 1.09003 * 109.46475 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46969 * 299.99656 * 1 2 3 27 27 H 1.08998 * 109.46995 * 60.00341 * 1 2 3 28 28 H 1.09002 * 109.47346 * 240.00514 * 2 1 3 29 29 H 1.08997 * 109.47511 * 119.99743 * 2 1 3 30 30 H 0.97001 * 119.99542 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47087 * 71.89259 * 16 14 13 32 32 H 1.09005 * 109.46806 * 191.88947 * 16 14 13 33 33 H 1.08996 * 109.46890 * 311.88739 * 16 14 13 34 34 H 1.09001 * 109.48365 * 61.56579 * 17 14 13 35 35 H 1.08999 * 109.49013 * 181.63127 * 17 14 13 36 36 H 1.00900 * 111.00228 * 295.45328 * 18 17 14 37 37 H 1.09002 * 109.46831 * 60.00446 * 21 19 18 38 38 H 1.09001 * 109.47217 * 179.97438 * 21 19 18 39 39 H 1.08992 * 109.46920 * 300.00130 * 21 19 18 40 40 H 1.08998 * 109.47212 * 53.21578 * 24 22 13 41 41 H 1.09003 * 109.47364 * 173.21996 * 24 22 13 42 42 H 1.09003 * 109.46535 * 293.21635 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9717 -0.8616 5 6 3.5450 1.4433 -0.0748 6 1 4.1267 1.8209 0.7532 7 6 4.1796 0.9619 -1.2003 8 7 3.4713 0.5025 -2.2087 9 14 6.0453 0.9622 -1.2928 10 1 6.5679 -0.3189 -0.7534 11 1 6.4708 1.1139 -2.7074 12 1 6.5805 2.0918 -0.4910 13 7 1.6107 2.1136 1.2342 14 6 2.5391 1.8308 2.3378 15 1 3.5221 2.2368 2.0991 16 6 2.6469 0.3179 2.5390 17 6 2.0154 2.4805 3.6208 18 7 1.8759 3.9284 3.4118 19 6 0.9475 4.2114 2.3083 20 1 -0.0355 3.8052 2.5468 21 6 0.8397 5.7242 2.1070 22 6 1.4712 3.5616 1.0252 23 1 2.4420 3.9877 0.7719 24 6 0.4861 3.8199 -0.1165 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9177 0.1642 -3.0006 31 1 3.2095 -0.1192 1.7141 32 1 3.1602 0.1119 3.4783 33 1 1.6478 -0.1169 2.5680 34 1 1.0447 2.0544 3.8740 35 1 2.7172 2.2965 4.4342 36 1 2.7739 4.3584 3.2479 37 1 1.8227 6.1298 1.8676 38 1 0.1513 5.9337 1.2882 39 1 0.4686 6.1868 3.0215 40 1 -0.4471 3.2930 0.0825 41 1 0.2904 4.8896 -0.1926 42 1 0.9133 3.4613 -1.0530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401436091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = 12.752106 kcal Electronic energy + Delta-G solvation = -19507.730428 eV Core-core repulsion = 16908.895237 eV Total energy + Delta-G solvation = -2598.835191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.41359 -35.61648 -33.44492 -32.29345 -31.05355 -28.95266 -27.80970 -26.25684 -24.35650 -23.52166 -21.95170 -20.13291 -19.70541 -19.04520 -16.44923 -15.34682 -15.11754 -14.82738 -14.46946 -14.02692 -13.19267 -13.07091 -12.89291 -12.60307 -12.28435 -12.03238 -11.62922 -11.53204 -11.31937 -11.14235 -11.09702 -10.97061 -10.92983 -10.81017 -10.66901 -10.49337 -10.16576 -10.03420 -9.69242 -9.50731 -9.37749 -8.89369 -8.30381 -7.78977 -7.04333 -6.01409 -4.11144 3.23886 3.31771 3.33787 4.37711 4.63598 4.85374 5.25237 5.35370 5.58441 5.63572 5.75750 5.87170 5.93759 5.96625 6.04463 6.12550 6.27951 6.30677 6.37307 6.39058 6.42895 6.48769 6.50660 6.58417 6.71937 6.79006 6.83866 7.01198 7.15125 7.18266 7.22658 7.40267 7.49042 7.66185 7.75453 7.79570 8.00642 8.14366 8.33065 8.55571 8.99652 9.55280 11.00339 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.009576 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.815629 B = 2923.420115 C = 3062.591081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.209 3.791 4 H 0.045 0.955 5 C -0.543 4.543 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.521 5.521 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.140 4.140 17 C 0.061 3.939 18 N -0.686 5.686 19 C 0.089 3.911 20 H 0.080 0.920 21 C -0.144 4.144 22 C 0.058 3.942 23 H 0.034 0.966 24 C -0.141 4.141 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.332 0.668 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 4.550 7.043 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.103 3.897 4 H 0.063 0.937 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.056 4.056 15 H 0.066 0.934 16 C -0.198 4.198 17 C -0.069 4.069 18 N -0.313 5.313 19 C -0.021 4.021 20 H 0.099 0.901 21 C -0.202 4.202 22 C -0.053 4.053 23 H 0.052 0.948 24 C -0.199 4.199 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.960 4.368 7.492 9.991 hybrid contribution 2.524 -0.048 -1.309 2.843 sum -2.437 4.320 6.183 7.926 Atomic orbital electron populations 1.21692 0.99190 0.98180 1.00347 1.21986 0.92208 0.99561 1.02378 1.19368 0.92797 0.91165 0.86417 0.93680 1.21835 0.92810 1.41737 1.01809 0.92015 1.24917 0.97606 0.95237 0.95668 1.69928 1.34870 1.41543 1.05913 0.86746 0.86621 0.78337 0.77190 1.20687 1.21293 1.20203 1.62639 1.47463 1.06714 1.07824 1.22146 0.95345 0.96589 0.91527 0.93380 1.22074 1.01490 0.95545 1.00674 1.22202 1.01189 0.87023 0.96488 1.60957 1.15116 1.11674 1.43587 1.21641 0.96976 0.94568 0.88961 0.90140 1.21854 1.01629 0.95317 1.01408 1.22103 0.97546 0.90673 0.94952 0.94769 1.21892 0.99396 0.99800 0.98828 0.95857 0.93259 0.94705 0.90643 0.92418 0.93014 0.89643 0.94789 0.92622 0.91057 0.91638 0.85177 0.93145 0.91940 0.92438 0.92556 0.93263 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.78 37.16 0.36 -2.39 16 2 C -0.12 -2.82 4.93 -26.73 -0.13 -2.96 16 3 C 0.21 4.90 1.37 -68.87 -0.09 4.80 16 4 H 0.05 1.19 5.38 -51.93 -0.28 0.91 16 5 C -0.54 -13.95 6.50 -34.44 -0.22 -14.18 16 6 H 0.06 1.60 5.12 -52.49 -0.27 1.34 16 7 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 8 N -0.88 -24.55 11.70 55.43 0.65 -23.90 16 9 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.52 -10.46 3.62 -212.06 -0.77 -11.23 16 14 C 0.05 1.03 1.96 -67.65 -0.13 0.90 16 15 H 0.05 1.03 5.73 -51.93 -0.30 0.74 16 16 C -0.14 -2.61 7.37 37.16 0.27 -2.34 16 17 C 0.06 0.98 5.97 -3.77 -0.02 0.96 16 18 N -0.69 -10.64 6.56 -106.58 -0.70 -11.34 16 19 C 0.09 1.39 2.71 -67.65 -0.18 1.21 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 21 C -0.14 -1.89 9.15 37.16 0.34 -1.55 16 22 C 0.06 1.07 2.00 -67.65 -0.14 0.93 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 24 C -0.14 -2.47 8.64 37.15 0.32 -2.15 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.96 7.69 -51.93 -0.40 0.56 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.96 6.43 -51.93 -0.33 1.63 16 29 H 0.06 1.28 3.74 -51.93 -0.19 1.09 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.83 5.10 -51.93 -0.26 1.57 16 32 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.05 1.03 7.16 -51.93 -0.37 0.65 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.33 5.05 8.80 -39.29 -0.35 4.70 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.77 6.34 -51.93 -0.33 0.44 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.73 6.16 -51.93 -0.32 0.41 16 42 H 0.06 1.28 6.22 -51.93 -0.32 0.95 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -26.21 301.99 -8.10 -34.31 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.09 Total: 6.78 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 0.28 Total: -15.04 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.82 Total: -46.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.21 -8.10 -34.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.060 kcal (2) G-P(sol) polarization free energy of solvation -26.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds