Wall clock time and date at job start Mon Mar 30 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 H 1.08996 * 109.46777 * 303.02225 * 3 2 1 5 5 C 1.50692 * 109.47494 * 183.01819 * 3 2 1 6 6 H 1.08001 * 120.00286 * 245.20632 * 5 3 2 7 7 C 1.37881 * 120.00159 * 65.19900 * 5 3 2 8 8 N 1.31519 * 119.99433 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00368 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47227 * 90.00107 * 9 7 5 11 11 H 1.48499 * 109.47409 * 209.99997 * 9 7 5 12 12 H 1.48498 * 109.47281 * 330.00439 * 9 7 5 13 13 N 1.46898 * 109.47053 * 63.01716 * 3 2 1 14 14 C 1.46960 * 111.00212 * 84.10658 * 13 3 2 15 15 H 1.09003 * 109.48590 * 63.19669 * 14 13 3 16 16 C 1.53006 * 109.48556 * 303.16008 * 14 13 3 17 17 C 1.53048 * 109.36966 * 183.18901 * 14 13 3 18 18 N 1.46956 * 109.36250 * 301.60013 * 17 14 13 19 19 C 1.46958 * 110.88274 * 59.32071 * 18 17 14 20 20 H 1.08998 * 109.49072 * 60.66203 * 19 18 17 21 21 C 1.52999 * 109.49091 * 180.70974 * 19 18 17 22 22 C 1.46956 * 111.00006 * 207.90698 * 13 3 2 23 23 H 1.09001 * 109.49130 * 296.77502 * 22 13 3 24 24 C 1.52994 * 109.49110 * 56.84849 * 22 13 3 25 25 H 1.09003 * 109.46475 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46969 * 299.99656 * 1 2 3 27 27 H 1.08998 * 109.46995 * 60.00341 * 1 2 3 28 28 H 1.09002 * 109.47346 * 240.00514 * 2 1 3 29 29 H 1.08997 * 109.47511 * 119.99743 * 2 1 3 30 30 H 0.97001 * 119.99542 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47087 * 71.89259 * 16 14 13 32 32 H 1.09005 * 109.46806 * 191.88947 * 16 14 13 33 33 H 1.08996 * 109.46890 * 311.88739 * 16 14 13 34 34 H 1.09001 * 109.48365 * 61.56579 * 17 14 13 35 35 H 1.08999 * 109.49013 * 181.63127 * 17 14 13 36 36 H 1.00900 * 111.00228 * 295.45328 * 18 17 14 37 37 H 1.09002 * 109.46831 * 60.00446 * 21 19 18 38 38 H 1.09001 * 109.47217 * 179.97438 * 21 19 18 39 39 H 1.08992 * 109.46920 * 300.00130 * 21 19 18 40 40 H 1.08998 * 109.47212 * 53.21578 * 24 22 13 41 41 H 1.09003 * 109.47364 * 173.21996 * 24 22 13 42 42 H 1.09003 * 109.46535 * 293.21635 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9717 -0.8616 5 6 3.5450 1.4433 -0.0748 6 1 4.1267 1.8209 0.7532 7 6 4.1796 0.9619 -1.2003 8 7 3.4713 0.5025 -2.2087 9 14 6.0453 0.9622 -1.2928 10 1 6.5679 -0.3189 -0.7534 11 1 6.4708 1.1139 -2.7074 12 1 6.5805 2.0918 -0.4910 13 7 1.6107 2.1136 1.2342 14 6 2.5391 1.8308 2.3378 15 1 3.5221 2.2368 2.0991 16 6 2.6469 0.3179 2.5390 17 6 2.0154 2.4805 3.6208 18 7 1.8759 3.9284 3.4118 19 6 0.9475 4.2114 2.3083 20 1 -0.0355 3.8052 2.5468 21 6 0.8397 5.7242 2.1070 22 6 1.4712 3.5616 1.0252 23 1 2.4420 3.9877 0.7719 24 6 0.4861 3.8199 -0.1165 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9177 0.1642 -3.0006 31 1 3.2095 -0.1192 1.7141 32 1 3.1602 0.1119 3.4783 33 1 1.6478 -0.1169 2.5680 34 1 1.0447 2.0544 3.8740 35 1 2.7172 2.2965 4.4342 36 1 2.7739 4.3584 3.2479 37 1 1.8227 6.1298 1.8676 38 1 0.1513 5.9337 1.2882 39 1 0.4686 6.1868 3.0215 40 1 -0.4471 3.2930 0.0825 41 1 0.2904 4.8896 -0.1926 42 1 0.9133 3.4613 -1.0530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401436091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:48 Heat of formation + Delta-G solvation = -4.281100 kcal Electronic energy + Delta-G solvation = -19508.469043 eV Core-core repulsion = 16908.895237 eV Total energy + Delta-G solvation = -2599.573806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93306 -37.20512 -34.89080 -34.16739 -32.77271 -30.29900 -29.38196 -28.04143 -25.72505 -25.26549 -23.45975 -21.66654 -21.18940 -20.81321 -18.33580 -17.00156 -16.73800 -16.32586 -15.88635 -15.72011 -14.91260 -14.58491 -14.41499 -14.13921 -13.79636 -13.51799 -13.23363 -13.08047 -12.95460 -12.76997 -12.64608 -12.55210 -12.42299 -12.33022 -12.19431 -12.15788 -11.73107 -11.52977 -11.45122 -11.23702 -11.14604 -10.77214 -10.25766 -9.21866 -8.77153 -8.03064 -6.20457 1.32847 1.35730 1.42581 2.38780 3.18047 3.26533 3.43998 4.00849 4.24104 4.30166 4.37885 4.44189 4.55598 4.63682 4.67215 4.71886 4.79931 4.83343 4.84646 4.94868 5.01017 5.06910 5.09635 5.16230 5.23890 5.31331 5.34369 5.42841 5.46877 5.50535 5.60583 5.62810 5.74315 5.90534 6.11295 6.13233 6.24642 6.42795 6.52083 6.81507 7.03024 7.48841 8.94278 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.009576 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.815629 B = 2923.420115 C = 3062.591081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.217 3.783 4 H 0.014 0.986 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.517 5.517 14 C 0.054 3.946 15 H 0.021 0.979 16 C -0.133 4.133 17 C 0.071 3.929 18 N -0.679 5.679 19 C 0.097 3.903 20 H 0.080 0.920 21 C -0.138 4.138 22 C 0.056 3.944 23 H 0.005 0.995 24 C -0.133 4.133 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.258 0.742 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.335 0.665 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 5.386 9.023 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.110 3.890 4 H 0.032 0.968 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.242 5.242 14 C -0.057 4.057 15 H 0.039 0.961 16 C -0.191 4.191 17 C -0.059 4.059 18 N -0.306 5.306 19 C -0.013 4.013 20 H 0.098 0.902 21 C -0.196 4.196 22 C -0.054 4.054 23 H 0.023 0.977 24 C -0.191 4.191 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.506 5.216 9.490 12.148 hybrid contribution 2.691 -0.291 -1.900 3.307 sum -2.815 4.925 7.590 9.476 Atomic orbital electron populations 1.21545 0.96893 0.99383 1.00293 1.21868 0.94206 0.98789 1.00908 1.19111 0.91416 0.91502 0.87017 0.96803 1.22110 0.94234 1.40490 1.01310 0.92511 1.25569 1.01182 0.95472 0.95689 1.70055 1.36110 1.42774 1.06333 0.85874 0.82430 0.78293 0.76915 1.20280 1.21362 1.19994 1.62648 1.47198 1.07709 1.06612 1.22220 0.93878 0.97050 0.92530 0.96141 1.21947 1.01391 0.95034 1.00720 1.22143 1.01670 0.87020 0.95102 1.60993 1.15299 1.11178 1.43122 1.21612 0.96570 0.96089 0.87075 0.90153 1.21811 1.01993 0.93124 1.02623 1.22233 0.96500 0.89596 0.97093 0.97692 1.21817 0.98887 1.01616 0.96789 0.94021 0.92323 0.95584 0.94190 0.91744 0.93308 0.92950 0.92064 0.92307 0.90695 0.89584 0.84847 0.93257 0.90917 0.90880 0.92164 0.90371 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.78 71.98 0.70 -4.22 16 2 C -0.12 -5.58 4.93 30.60 0.15 -5.42 16 3 C 0.22 10.43 1.37 44.17 0.06 10.49 16 4 H 0.01 0.77 5.38 -2.39 -0.01 0.76 16 5 C -0.54 -28.61 6.50 25.60 0.17 -28.45 16 6 H 0.06 3.02 5.12 -2.91 -0.01 3.00 16 7 C 0.02 1.11 5.31 84.65 0.45 1.56 16 8 N -0.91 -52.43 11.70 21.45 0.25 -52.18 16 9 Si 0.94 43.74 29.54 68.60 2.03 45.77 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.52 -20.63 3.62 -824.83 -2.99 -23.62 16 14 C 0.05 1.98 1.96 44.92 0.09 2.07 16 15 H 0.02 0.89 5.73 -2.39 -0.01 0.87 16 16 C -0.13 -4.81 7.37 71.98 0.53 -4.28 16 17 C 0.07 2.09 5.97 86.31 0.52 2.61 16 18 N -0.68 -19.27 6.56 -491.12 -3.22 -22.50 16 19 C 0.10 2.81 2.71 44.92 0.12 2.93 16 20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 21 C -0.14 -3.20 9.15 71.98 0.66 -2.54 16 22 C 0.06 2.05 2.00 44.92 0.09 2.14 16 23 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 24 C -0.13 -4.61 8.64 71.98 0.62 -3.99 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 2.21 7.69 -2.39 -0.02 2.19 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.04 2.14 6.43 -2.39 -0.02 2.13 16 29 H 0.06 2.89 3.74 -2.39 -0.01 2.88 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.05 2.25 5.10 -2.39 -0.01 2.23 16 32 H 0.06 1.85 8.10 -2.38 -0.02 1.83 16 33 H 0.06 2.07 7.16 -2.39 -0.02 2.05 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.33 9.44 8.80 -89.69 -0.79 8.65 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.55 6.34 -2.39 -0.02 1.53 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 2.20 6.16 -2.39 -0.01 2.19 16 42 H 0.03 1.22 6.22 -2.39 -0.01 1.21 16 Total: -1.00 -57.48 301.99 0.43 -57.04 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.21 Total: 22.60 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 4.16 Total: -27.11 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -5.96 Total: -98.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -57.48 0.43 -57.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.761 kcal (2) G-P(sol) polarization free energy of solvation -57.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds