Wall clock time and date at job start Mon Mar 30 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47456 * 303.35556 * 3 2 1 5 5 C 1.50699 * 109.46927 * 183.34977 * 3 2 1 6 6 H 1.07998 * 120.00343 * 272.70367 * 5 3 2 7 7 C 1.37880 * 119.99568 * 92.70523 * 5 3 2 8 8 N 1.31517 * 119.99418 * 183.44898 * 7 5 3 9 9 Si 1.86792 * 120.00232 * 3.44812 * 7 5 3 10 10 H 1.48500 * 109.47384 * 85.60544 * 9 7 5 11 11 H 1.48501 * 109.47123 * 205.60640 * 9 7 5 12 12 H 1.48498 * 109.47183 * 325.60427 * 9 7 5 13 13 N 1.46900 * 109.46572 * 63.35689 * 3 2 1 14 14 C 1.46950 * 111.00624 * 84.43400 * 13 3 2 15 15 H 1.09005 * 109.48905 * 63.21253 * 14 13 3 16 16 C 1.52997 * 109.48719 * 303.15457 * 14 13 3 17 17 C 1.53049 * 109.36630 * 183.18734 * 14 13 3 18 18 N 1.46960 * 109.36462 * 301.59404 * 17 14 13 19 19 C 1.46958 * 110.87646 * 59.31878 * 18 17 14 20 20 H 1.08998 * 109.48949 * 180.70827 * 19 18 17 21 21 C 1.52998 * 109.50427 * 60.66094 * 19 18 17 22 22 C 1.46959 * 110.99303 * 208.23363 * 13 3 2 23 23 H 1.09000 * 109.49194 * 296.76951 * 22 13 3 24 24 C 1.52996 * 109.49255 * 56.84509 * 22 13 3 25 25 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46994 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47354 * 59.99473 * 1 2 3 28 28 H 1.09000 * 109.47354 * 120.00527 * 2 1 3 29 29 H 1.09003 * 109.46994 * 240.00184 * 2 1 3 30 30 H 0.97009 * 119.99514 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47411 * 72.63141 * 16 14 13 32 32 H 1.08999 * 109.47564 * 192.63613 * 16 14 13 33 33 H 1.08999 * 109.47336 * 312.63330 * 16 14 13 34 34 H 1.09001 * 109.48754 * 181.63264 * 17 14 13 35 35 H 1.08997 * 109.50862 * 61.57588 * 17 14 13 36 36 H 1.00903 * 110.99783 * 295.45942 * 18 17 14 37 37 H 1.09005 * 109.47199 * 300.09694 * 21 19 18 38 38 H 1.09002 * 109.47410 * 60.09260 * 21 19 18 39 39 H 1.09004 * 109.47492 * 180.09576 * 21 19 18 40 40 H 1.09000 * 109.47460 * 51.09947 * 24 22 13 41 41 H 1.09001 * 109.47188 * 171.10405 * 24 22 13 42 42 H 1.08997 * 109.46963 * 291.09791 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9734 -0.8583 5 6 3.5447 1.4432 -0.0830 6 1 4.1354 1.3812 0.8190 7 6 4.1673 1.5232 -1.3107 8 7 5.4784 1.4555 -1.3886 9 14 3.1486 1.7275 -2.8630 10 1 2.8683 3.1688 -3.0850 11 1 3.9002 1.1849 -4.0232 12 1 1.8676 0.9911 -2.7149 13 7 1.6176 2.1111 1.2380 14 6 2.5562 1.8324 2.3338 15 1 3.5352 2.2435 2.0875 16 6 2.6728 0.3200 2.5337 17 6 2.0398 2.4792 3.6212 18 7 1.8917 3.9266 3.4139 19 6 0.9532 4.2053 2.3179 20 1 0.8700 5.2828 2.1756 21 6 -0.4212 3.6286 2.6633 22 6 1.4695 3.5584 1.0305 23 1 2.4361 3.9892 0.7696 24 6 0.4740 3.8124 -0.1031 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.9165 1.5121 -2.2523 31 1 3.2421 -0.1124 1.7109 32 1 3.1830 0.1161 3.4751 33 1 1.6764 -0.1213 2.5575 34 1 2.7490 2.2983 4.4289 35 1 1.0732 2.0485 3.8826 36 1 2.7864 4.3607 3.2429 37 1 -0.3377 2.5512 2.8065 38 1 -0.7887 4.0895 3.5802 39 1 -1.1166 3.8342 1.8494 40 1 -0.4413 3.2510 0.0844 41 1 0.2438 4.8767 -0.1529 42 1 0.9103 3.4906 -1.0487 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401436092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:52 Heat of formation + Delta-G solvation = 16.122986 kcal Electronic energy + Delta-G solvation = -19763.050801 eV Core-core repulsion = 17164.361782 eV Total energy + Delta-G solvation = -2598.689018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64453 -35.71241 -33.34850 -32.21271 -31.46385 -28.78295 -27.86065 -26.74215 -25.20766 -23.31449 -21.89288 -20.45106 -19.43898 -18.41829 -17.02909 -15.99586 -14.98197 -14.86548 -14.42378 -14.33194 -13.37884 -13.06795 -12.78112 -12.53173 -12.30694 -12.15520 -12.00547 -11.80859 -11.33847 -11.23518 -11.16898 -11.08557 -11.02099 -10.90488 -10.68410 -10.30023 -10.26252 -10.04984 -9.84349 -9.60929 -9.57229 -8.93197 -8.55029 -7.85998 -7.07938 -6.14624 -4.15300 3.20967 3.31023 3.33745 4.35036 4.63681 4.78484 5.20133 5.36566 5.55145 5.60884 5.70945 5.84729 5.95462 5.97138 6.02477 6.07933 6.14101 6.16770 6.21395 6.30162 6.32412 6.37854 6.44891 6.52399 6.60768 6.70524 6.73282 6.75131 6.84610 7.00711 7.05445 7.12848 7.29128 7.36309 7.43527 7.59013 7.76161 8.07347 8.23470 8.50900 8.90324 9.50505 10.97288 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.010590 C = 0.010252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.088157 B = 2643.292080 C = 2730.486535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.173 3.827 4 H 0.042 0.958 5 C -0.544 4.544 6 H 0.087 0.913 7 C 0.077 3.923 8 N -0.897 5.897 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.511 5.511 14 C 0.054 3.946 15 H 0.057 0.943 16 C -0.144 4.144 17 C 0.059 3.941 18 N -0.686 5.686 19 C 0.091 3.909 20 H 0.072 0.928 21 C -0.133 4.133 22 C 0.053 3.947 23 H 0.040 0.960 24 C -0.141 4.141 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.335 0.665 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 2.341 5.863 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.066 3.934 4 H 0.059 0.941 5 C -0.582 4.582 6 H 0.105 0.895 7 C -0.126 4.126 8 N -0.535 5.535 9 Si 0.693 3.307 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.236 5.236 14 C -0.056 4.056 15 H 0.074 0.926 16 C -0.202 4.202 17 C -0.071 4.071 18 N -0.313 5.313 19 C -0.020 4.020 20 H 0.090 0.910 21 C -0.191 4.191 22 C -0.058 4.058 23 H 0.058 0.942 24 C -0.199 4.199 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.982 2.240 6.387 12.060 hybrid contribution 1.094 0.193 -2.211 2.475 sum -8.888 2.433 4.176 10.117 Atomic orbital electron populations 1.21735 0.98257 0.98897 1.01007 1.22183 0.93275 0.99279 1.01666 1.19787 0.94293 0.91096 0.88198 0.94050 1.21781 0.90583 1.51070 0.94786 0.89510 1.25040 0.94592 0.94222 0.98743 1.69916 1.08285 1.50152 1.25152 0.87045 0.81254 0.78812 0.83551 1.20356 1.21599 1.18527 1.62616 1.46915 1.06901 1.07197 1.22141 0.95736 0.96448 0.91322 0.92566 1.22121 1.01338 0.95653 1.01055 1.22240 1.01212 0.87291 0.96381 1.60903 1.14894 1.11706 1.43804 1.21614 0.93423 0.98273 0.88678 0.91028 1.21733 0.95054 1.02288 0.99987 1.22132 0.97671 0.90864 0.95096 0.94170 1.21877 0.99617 1.00090 0.98323 0.95189 0.92237 0.94715 0.90674 0.93726 0.92737 0.89779 0.94398 0.92655 0.91655 0.90703 0.84786 0.91215 0.93624 0.92838 0.91907 0.93264 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.79 37.16 0.36 -2.16 16 2 C -0.13 -2.60 5.02 -26.73 -0.13 -2.73 16 3 C 0.17 3.81 1.05 -68.86 -0.07 3.74 16 4 H 0.04 0.96 2.76 -51.93 -0.14 0.82 16 5 C -0.54 -14.13 7.16 -34.44 -0.25 -14.38 16 6 H 0.09 2.43 4.92 -52.49 -0.26 2.17 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.87 21.12 26.65 -169.99 -4.53 16.59 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.13 6.75 56.52 0.38 -5.75 16 13 N -0.51 -9.72 2.95 -212.07 -0.63 -10.35 16 14 C 0.05 1.00 1.93 -67.66 -0.13 0.87 16 15 H 0.06 1.24 6.10 -51.93 -0.32 0.92 16 16 C -0.14 -2.58 7.21 37.16 0.27 -2.32 16 17 C 0.06 0.92 5.59 -3.77 -0.02 0.90 16 18 N -0.69 -10.51 6.70 -106.59 -0.71 -11.22 16 19 C 0.09 1.39 3.23 -67.66 -0.22 1.17 16 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.13 -1.89 8.46 37.16 0.31 -1.57 16 22 C 0.05 0.96 2.19 -67.66 -0.15 0.81 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -2.38 8.05 37.16 0.30 -2.08 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.50 3.76 -51.93 -0.20 1.31 16 29 H 0.04 0.99 7.73 -51.93 -0.40 0.58 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.75 4.88 -51.93 -0.25 1.50 16 32 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.05 0.95 7.09 -51.93 -0.37 0.58 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.18 6.35 -51.93 -0.33 0.85 16 36 H 0.34 5.11 8.89 -39.29 -0.35 4.77 16 37 H 0.07 1.08 5.94 -51.93 -0.31 0.77 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 40 H 0.06 1.01 6.92 -51.93 -0.36 0.65 16 41 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.05 1.02 6.33 -51.93 -0.33 0.69 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -27.38 295.72 -7.35 -34.73 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.89 Total: 7.35 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 0.18 Total: -15.72 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.57 Total: -47.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.53 Total: 16.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.38 -7.35 -34.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.853 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds