Wall clock time and date at job start Mon Mar 30 2020 03:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 H 1.08996 * 109.47456 * 303.35556 * 3 2 1 5 5 C 1.50699 * 109.46927 * 183.34977 * 3 2 1 6 6 H 1.07998 * 120.00343 * 272.70367 * 5 3 2 7 7 C 1.37880 * 119.99568 * 92.70523 * 5 3 2 8 8 N 1.31517 * 119.99418 * 183.44898 * 7 5 3 9 9 Si 1.86792 * 120.00232 * 3.44812 * 7 5 3 10 10 H 1.48500 * 109.47384 * 85.60544 * 9 7 5 11 11 H 1.48501 * 109.47123 * 205.60640 * 9 7 5 12 12 H 1.48498 * 109.47183 * 325.60427 * 9 7 5 13 13 N 1.46900 * 109.46572 * 63.35689 * 3 2 1 14 14 C 1.46950 * 111.00624 * 84.43400 * 13 3 2 15 15 H 1.09005 * 109.48905 * 63.21253 * 14 13 3 16 16 C 1.52997 * 109.48719 * 303.15457 * 14 13 3 17 17 C 1.53049 * 109.36630 * 183.18734 * 14 13 3 18 18 N 1.46960 * 109.36462 * 301.59404 * 17 14 13 19 19 C 1.46958 * 110.87646 * 59.31878 * 18 17 14 20 20 H 1.08998 * 109.48949 * 180.70827 * 19 18 17 21 21 C 1.52998 * 109.50427 * 60.66094 * 19 18 17 22 22 C 1.46959 * 110.99303 * 208.23363 * 13 3 2 23 23 H 1.09000 * 109.49194 * 296.76951 * 22 13 3 24 24 C 1.52996 * 109.49255 * 56.84509 * 22 13 3 25 25 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46994 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47354 * 59.99473 * 1 2 3 28 28 H 1.09000 * 109.47354 * 120.00527 * 2 1 3 29 29 H 1.09003 * 109.46994 * 240.00184 * 2 1 3 30 30 H 0.97009 * 119.99514 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47411 * 72.63141 * 16 14 13 32 32 H 1.08999 * 109.47564 * 192.63613 * 16 14 13 33 33 H 1.08999 * 109.47336 * 312.63330 * 16 14 13 34 34 H 1.09001 * 109.48754 * 181.63264 * 17 14 13 35 35 H 1.08997 * 109.50862 * 61.57588 * 17 14 13 36 36 H 1.00903 * 110.99783 * 295.45942 * 18 17 14 37 37 H 1.09005 * 109.47199 * 300.09694 * 21 19 18 38 38 H 1.09002 * 109.47410 * 60.09260 * 21 19 18 39 39 H 1.09004 * 109.47492 * 180.09576 * 21 19 18 40 40 H 1.09000 * 109.47460 * 51.09947 * 24 22 13 41 41 H 1.09001 * 109.47188 * 171.10405 * 24 22 13 42 42 H 1.08997 * 109.46963 * 291.09791 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9734 -0.8583 5 6 3.5447 1.4432 -0.0830 6 1 4.1354 1.3812 0.8190 7 6 4.1673 1.5232 -1.3107 8 7 5.4784 1.4555 -1.3886 9 14 3.1486 1.7275 -2.8630 10 1 2.8683 3.1688 -3.0850 11 1 3.9002 1.1849 -4.0232 12 1 1.8676 0.9911 -2.7149 13 7 1.6176 2.1111 1.2380 14 6 2.5562 1.8324 2.3338 15 1 3.5352 2.2435 2.0875 16 6 2.6728 0.3200 2.5337 17 6 2.0398 2.4792 3.6212 18 7 1.8917 3.9266 3.4139 19 6 0.9532 4.2053 2.3179 20 1 0.8700 5.2828 2.1756 21 6 -0.4212 3.6286 2.6633 22 6 1.4695 3.5584 1.0305 23 1 2.4361 3.9892 0.7696 24 6 0.4740 3.8124 -0.1031 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.9165 1.5121 -2.2523 31 1 3.2421 -0.1124 1.7109 32 1 3.1830 0.1161 3.4751 33 1 1.6764 -0.1213 2.5575 34 1 2.7490 2.2983 4.4289 35 1 1.0732 2.0485 3.8826 36 1 2.7864 4.3607 3.2429 37 1 -0.3377 2.5512 2.8065 38 1 -0.7887 4.0895 3.5802 39 1 -1.1166 3.8342 1.8494 40 1 -0.4413 3.2510 0.0844 41 1 0.2438 4.8767 -0.1529 42 1 0.9103 3.4906 -1.0487 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401436092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:51 Heat of formation + Delta-G solvation = -2.802385 kcal Electronic energy + Delta-G solvation = -19763.871466 eV Core-core repulsion = 17164.361782 eV Total energy + Delta-G solvation = -2599.509684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12728 -37.25698 -34.76303 -34.25513 -32.98379 -30.18162 -29.31875 -28.43699 -26.52927 -25.05224 -23.35259 -21.94935 -21.07602 -19.96572 -18.88939 -17.42701 -16.54470 -16.42898 -16.13918 -15.88232 -14.89890 -14.73168 -14.36850 -14.07377 -13.90736 -13.67229 -13.43356 -13.19484 -12.90383 -12.78533 -12.70659 -12.57772 -12.48800 -12.30737 -12.19745 -11.79787 -11.77264 -11.68925 -11.47185 -11.25210 -11.22800 -10.81224 -10.52621 -9.24918 -8.74220 -8.29772 -6.31394 1.24021 1.28494 1.37154 2.29466 3.02664 3.25596 3.43729 4.01060 4.21819 4.25978 4.29644 4.44906 4.54718 4.56730 4.63117 4.64594 4.76033 4.78290 4.82536 4.84617 4.98190 5.01489 5.04806 5.17408 5.19157 5.23434 5.28688 5.40545 5.42992 5.48326 5.53980 5.58953 5.65627 5.67509 5.77041 6.12897 6.21181 6.44344 6.50673 6.68024 6.81260 7.37432 8.85386 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.010590 C = 0.010252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.088157 B = 2643.292080 C = 2730.486535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.176 3.824 4 H 0.036 0.964 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.920 3.080 10 H -0.273 1.273 11 H -0.293 1.293 12 H -0.244 1.244 13 N -0.496 5.496 14 C 0.055 3.945 15 H 0.012 0.988 16 C -0.136 4.136 17 C 0.069 3.931 18 N -0.681 5.681 19 C 0.095 3.905 20 H 0.087 0.913 21 C -0.126 4.126 22 C 0.049 3.951 23 H 0.001 0.999 24 C -0.137 4.137 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.334 0.666 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 2.719 6.862 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 C 0.068 3.932 4 H 0.054 0.946 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.589 5.589 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.220 1.220 12 H -0.168 1.168 13 N -0.221 5.221 14 C -0.055 4.055 15 H 0.030 0.970 16 C -0.193 4.193 17 C -0.061 4.061 18 N -0.307 5.307 19 C -0.016 4.016 20 H 0.105 0.895 21 C -0.183 4.183 22 C -0.062 4.062 23 H 0.019 0.981 24 C -0.195 4.195 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.115 2.622 7.402 15.287 hybrid contribution 2.111 0.093 -2.415 3.209 sum -11.004 2.715 4.987 12.383 Atomic orbital electron populations 1.21618 0.95318 1.00495 1.01375 1.22116 0.95830 0.97652 1.00936 1.19706 0.91349 0.92540 0.89575 0.94611 1.22112 0.92910 1.48271 0.93407 0.92537 1.25784 0.95386 0.94863 1.01976 1.70060 1.10094 1.53151 1.25618 0.86157 0.80379 0.79000 0.79892 1.19904 1.21961 1.16751 1.62675 1.45982 1.07591 1.05810 1.22158 0.93632 0.96998 0.92713 0.97022 1.21994 1.01718 0.94979 1.00657 1.22177 1.01911 0.87250 0.94731 1.60955 1.14942 1.11252 1.43584 1.21671 0.94034 0.98995 0.86856 0.89494 1.21679 0.94043 1.01481 1.01129 1.22286 0.96439 0.89939 0.97531 0.98140 1.21857 0.99367 1.02027 0.96240 0.93034 0.91358 0.94759 0.90312 0.95777 0.93045 0.93339 0.92397 0.91180 0.90351 0.89498 0.84943 0.92256 0.92274 0.91633 0.90454 0.90706 0.95410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.79 71.98 0.70 -3.55 16 2 C -0.13 -5.12 5.02 30.59 0.15 -4.97 16 3 C 0.18 7.74 1.05 44.17 0.05 7.78 16 4 H 0.04 1.64 2.76 -2.39 -0.01 1.63 16 5 C -0.53 -28.48 7.16 25.60 0.18 -28.30 16 6 H 0.06 3.36 4.92 -2.91 -0.01 3.34 16 7 C 0.02 0.99 5.47 84.66 0.46 1.45 16 8 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 9 Si 0.92 44.43 26.65 68.60 1.83 46.26 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.24 -10.99 6.75 99.48 0.67 -10.32 16 13 N -0.50 -18.42 2.95 -824.86 -2.44 -20.86 16 14 C 0.06 2.04 1.93 44.92 0.09 2.13 16 15 H 0.01 0.54 6.10 -2.38 -0.01 0.53 16 16 C -0.14 -4.79 7.21 71.98 0.52 -4.28 16 17 C 0.07 2.03 5.59 86.31 0.48 2.52 16 18 N -0.68 -19.44 6.70 -491.13 -3.29 -22.73 16 19 C 0.09 2.65 3.23 44.92 0.15 2.80 16 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 21 C -0.13 -3.06 8.46 71.98 0.61 -2.45 16 22 C 0.05 1.71 2.19 44.92 0.10 1.80 16 23 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 24 C -0.14 -4.31 8.05 71.98 0.58 -3.73 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 2.10 7.70 -2.39 -0.02 2.09 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 3.10 3.76 -2.39 -0.01 3.09 16 29 H 0.02 1.04 7.73 -2.39 -0.02 1.02 16 30 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.05 2.06 4.88 -2.39 -0.01 2.05 16 32 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 33 H 0.07 2.25 7.09 -2.39 -0.02 2.24 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.42 6.35 -2.39 -0.02 2.40 16 36 H 0.33 9.86 8.89 -89.69 -0.80 9.07 16 37 H 0.06 1.58 5.94 -2.38 -0.01 1.57 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.45 6.61 -2.38 -0.02 1.43 16 40 H 0.08 2.21 6.92 -2.39 -0.02 2.19 16 41 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 42 H 0.03 1.00 6.33 -2.39 -0.02 0.99 16 Total: -1.00 -61.28 295.72 0.65 -60.64 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.18 Total: 24.07 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.07 Total: -28.79 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.43 Total: -102.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.83 Total: 46.26 kcal Total: -61.28 0.65 -60.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.834 kcal (2) G-P(sol) polarization free energy of solvation -61.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds