Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47125 * 2 1 4 4 H 1.09007 * 109.46863 * 303.63978 * 3 2 1 5 5 C 1.50703 * 109.47124 * 183.64825 * 3 2 1 6 6 H 1.07996 * 119.99656 * 245.36807 * 5 3 2 7 7 C 1.37867 * 120.00188 * 65.36391 * 5 3 2 8 8 N 1.31514 * 120.00498 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00194 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47418 * 89.99628 * 9 7 5 11 11 H 1.48495 * 109.47410 * 210.00108 * 9 7 5 12 12 H 1.48507 * 109.46701 * 329.99975 * 9 7 5 13 13 N 1.46898 * 109.47565 * 63.64324 * 3 2 1 14 14 C 1.46959 * 111.00037 * 85.45112 * 13 3 2 15 15 H 1.08998 * 109.48690 * 63.21792 * 14 13 3 16 16 C 1.53005 * 109.48523 * 303.15617 * 14 13 3 17 17 C 1.53049 * 109.36624 * 183.19058 * 14 13 3 18 18 N 1.46957 * 109.36261 * 301.59856 * 17 14 13 19 19 C 1.46959 * 110.88544 * 59.31758 * 18 17 14 20 20 H 1.09008 * 109.48543 * 60.64272 * 19 18 17 21 21 C 1.52992 * 109.49208 * 180.71073 * 19 18 17 22 22 C 1.46960 * 110.99928 * 209.24743 * 13 3 2 23 23 H 1.08997 * 109.48980 * 56.82571 * 22 13 3 24 24 C 1.53000 * 109.49296 * 296.77860 * 22 13 3 25 25 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47489 * 300.00495 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.00343 * 1 2 3 28 28 H 1.09002 * 109.46733 * 119.99795 * 2 1 3 29 29 H 1.09000 * 109.47024 * 239.99285 * 2 1 3 30 30 H 0.96998 * 120.00984 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47163 * 69.87859 * 16 14 13 32 32 H 1.08995 * 109.46796 * 189.87719 * 16 14 13 33 33 H 1.09002 * 109.46895 * 309.87348 * 16 14 13 34 34 H 1.08999 * 109.48891 * 181.62943 * 17 14 13 35 35 H 1.09003 * 109.50964 * 61.56987 * 17 14 13 36 36 H 1.00900 * 111.00048 * 295.44947 * 18 17 14 37 37 H 1.09001 * 109.47560 * 179.88920 * 21 19 18 38 38 H 1.08998 * 109.47567 * 299.89618 * 21 19 18 39 39 H 1.09006 * 109.46978 * 59.89252 * 21 19 18 40 40 H 1.09004 * 109.46524 * 56.32186 * 24 22 13 41 41 H 1.08989 * 109.47194 * 176.32598 * 24 22 13 42 42 H 1.09001 * 109.47105 * 296.32725 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9747 -0.8556 5 6 3.5443 1.4434 -0.0904 6 1 4.1345 1.8154 0.7339 7 6 4.1670 0.9693 -1.2254 8 7 3.4483 0.5156 -2.2291 9 14 6.0317 0.9698 -1.3372 10 1 6.5595 -0.3149 -0.8115 11 1 6.4426 1.1307 -2.7550 12 1 6.5753 2.0941 -0.5336 13 7 1.6235 2.1091 1.2410 14 6 2.5803 1.8483 2.3256 15 1 3.5497 2.2731 2.0652 16 6 2.7220 0.3385 2.5290 17 6 2.0709 2.4920 3.6173 18 7 1.8985 3.9361 3.4070 19 6 0.9418 4.1971 2.3224 20 1 -0.0277 3.7722 2.5826 21 6 0.8000 5.7068 2.1190 22 6 1.4512 3.5534 1.0306 23 1 0.7293 3.7209 0.2313 24 6 2.7940 4.1769 0.6447 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8864 0.1824 -3.0278 31 1 3.2444 -0.0955 1.6764 32 1 3.2898 0.1463 3.4393 33 1 1.7327 -0.1108 2.6162 34 1 2.7930 2.3245 4.4164 35 1 1.1142 2.0479 3.8927 36 1 2.7842 4.3831 3.2232 37 1 0.0919 5.9000 1.3132 38 1 0.4372 6.1650 3.0391 39 1 1.7700 6.1312 1.8597 40 1 3.1888 3.6722 -0.2372 41 1 2.6535 5.2352 0.4253 42 1 3.4964 4.0672 1.4710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401436093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = 13.720190 kcal Electronic energy + Delta-G solvation = -19644.660520 eV Core-core repulsion = 17045.867308 eV Total energy + Delta-G solvation = -2598.793212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68848 -35.64949 -33.02797 -32.19084 -31.17740 -28.92133 -27.41383 -26.60438 -24.32506 -23.34511 -22.58161 -20.63098 -19.33624 -18.35920 -16.46809 -15.28704 -15.13372 -14.57581 -14.37972 -14.04937 -13.64860 -13.19448 -12.87812 -12.47260 -12.20368 -11.89860 -11.61399 -11.55800 -11.31497 -11.10133 -11.05565 -11.02456 -10.93830 -10.73534 -10.60257 -10.47125 -10.21946 -9.99179 -9.54893 -9.51843 -9.39409 -8.88586 -8.32588 -7.81615 -7.02645 -6.02245 -4.10220 3.23319 3.31473 3.33307 4.36688 4.67257 4.89841 5.23806 5.44735 5.60533 5.65395 5.78395 5.85673 5.93465 5.96464 6.12754 6.14797 6.30835 6.31793 6.37934 6.42411 6.45595 6.49472 6.55417 6.64147 6.69010 6.72710 7.00977 7.14182 7.15553 7.17528 7.25906 7.44568 7.49529 7.64881 7.77379 7.80504 7.99171 8.12742 8.32465 8.54574 8.98396 9.53982 10.99498 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.010062 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.358744 B = 2782.107379 C = 3086.330950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.536 4.536 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.521 5.521 14 C 0.052 3.948 15 H 0.055 0.945 16 C -0.142 4.142 17 C 0.061 3.939 18 N -0.685 5.685 19 C 0.089 3.911 20 H 0.079 0.921 21 C -0.143 4.143 22 C 0.058 3.942 23 H 0.070 0.930 24 C -0.184 4.184 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.260 0.740 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.333 0.667 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 4.502 7.244 9.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.110 3.890 4 H 0.051 0.949 5 C -0.575 4.575 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.058 4.058 15 H 0.072 0.928 16 C -0.200 4.200 17 C -0.069 4.069 18 N -0.313 5.313 19 C -0.021 4.021 20 H 0.097 0.903 21 C -0.201 4.201 22 C -0.053 4.053 23 H 0.088 0.912 24 C -0.243 4.243 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.933 4.295 7.707 9.660 hybrid contribution 2.442 0.017 -1.357 2.794 sum -1.491 4.313 6.350 7.819 Atomic orbital electron populations 1.21695 0.99203 0.98243 1.00347 1.21948 0.92210 0.99505 1.02287 1.19221 0.93046 0.91041 0.85712 0.94937 1.21818 0.92601 1.41572 1.01492 0.91639 1.24922 0.97463 0.95328 0.95842 1.69924 1.34815 1.41691 1.05751 0.86774 0.86733 0.78370 0.77197 1.20723 1.21356 1.20135 1.62739 1.46135 1.07178 1.08482 1.22151 0.95556 0.96514 0.91564 0.92787 1.22088 1.01092 0.95717 1.01081 1.22197 1.01028 0.87234 0.96480 1.60957 1.14686 1.11391 1.44309 1.21600 0.96438 0.94655 0.89411 0.90326 1.21825 1.01688 0.95452 1.01179 1.22203 0.96460 0.89666 0.96959 0.91153 1.22610 0.98530 0.99508 1.03652 0.95800 0.93282 0.94704 0.92521 0.90586 0.93006 0.89440 0.94836 0.92864 0.91749 0.91149 0.84970 0.92474 0.92540 0.92654 0.88965 0.94343 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.79 37.16 0.36 -2.41 16 2 C -0.12 -2.76 5.00 -26.73 -0.13 -2.89 16 3 C 0.22 5.01 1.20 -68.87 -0.08 4.93 16 4 H 0.03 0.87 7.69 -51.93 -0.40 0.47 16 5 C -0.54 -13.24 3.98 -34.44 -0.14 -13.38 16 6 H 0.07 1.63 4.85 -52.49 -0.25 1.38 16 7 C 0.07 1.75 5.31 -17.82 -0.09 1.65 16 8 N -0.88 -24.20 11.71 55.43 0.65 -23.56 16 9 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.52 -10.35 3.82 -212.06 -0.81 -11.16 16 14 C 0.05 0.97 1.61 -67.65 -0.11 0.87 16 15 H 0.05 1.13 4.11 -51.93 -0.21 0.91 16 16 C -0.14 -2.63 7.37 37.16 0.27 -2.36 16 17 C 0.06 0.97 5.99 -3.77 -0.02 0.95 16 18 N -0.68 -10.56 6.48 -106.59 -0.69 -11.25 16 19 C 0.09 1.39 2.95 -67.66 -0.20 1.19 16 20 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 21 C -0.14 -1.89 9.06 37.15 0.34 -1.55 16 22 C 0.06 1.06 2.40 -67.65 -0.16 0.89 16 23 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 24 C -0.18 -3.42 7.23 37.16 0.27 -3.15 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.25 3.88 -51.93 -0.20 1.05 16 29 H 0.08 1.96 6.43 -51.93 -0.33 1.63 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.09 1.86 4.95 -51.93 -0.26 1.60 16 32 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.05 0.97 7.27 -51.93 -0.38 0.60 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.33 5.07 7.10 -39.29 -0.28 4.79 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.72 6.49 -51.93 -0.34 0.39 16 40 H 0.09 2.05 5.70 -51.93 -0.30 1.75 16 41 H 0.04 0.63 6.62 -51.94 -0.34 0.28 16 42 H 0.04 0.78 5.12 -51.93 -0.27 0.52 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -25.29 294.07 -8.03 -33.32 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.89 Total: 7.94 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 0.30 Total: -15.26 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.85 Total: -45.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.29 -8.03 -33.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.039 kcal (2) G-P(sol) polarization free energy of solvation -25.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds