Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47125 * 2 1 4 4 H 1.09007 * 109.46863 * 303.63978 * 3 2 1 5 5 C 1.50703 * 109.47124 * 183.64825 * 3 2 1 6 6 H 1.07996 * 119.99656 * 245.36807 * 5 3 2 7 7 C 1.37867 * 120.00188 * 65.36391 * 5 3 2 8 8 N 1.31514 * 120.00498 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00194 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47418 * 89.99628 * 9 7 5 11 11 H 1.48495 * 109.47410 * 210.00108 * 9 7 5 12 12 H 1.48507 * 109.46701 * 329.99975 * 9 7 5 13 13 N 1.46898 * 109.47565 * 63.64324 * 3 2 1 14 14 C 1.46959 * 111.00037 * 85.45112 * 13 3 2 15 15 H 1.08998 * 109.48690 * 63.21792 * 14 13 3 16 16 C 1.53005 * 109.48523 * 303.15617 * 14 13 3 17 17 C 1.53049 * 109.36624 * 183.19058 * 14 13 3 18 18 N 1.46957 * 109.36261 * 301.59856 * 17 14 13 19 19 C 1.46959 * 110.88544 * 59.31758 * 18 17 14 20 20 H 1.09008 * 109.48543 * 60.64272 * 19 18 17 21 21 C 1.52992 * 109.49208 * 180.71073 * 19 18 17 22 22 C 1.46960 * 110.99928 * 209.24743 * 13 3 2 23 23 H 1.08997 * 109.48980 * 56.82571 * 22 13 3 24 24 C 1.53000 * 109.49296 * 296.77860 * 22 13 3 25 25 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47489 * 300.00495 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.00343 * 1 2 3 28 28 H 1.09002 * 109.46733 * 119.99795 * 2 1 3 29 29 H 1.09000 * 109.47024 * 239.99285 * 2 1 3 30 30 H 0.96998 * 120.00984 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47163 * 69.87859 * 16 14 13 32 32 H 1.08995 * 109.46796 * 189.87719 * 16 14 13 33 33 H 1.09002 * 109.46895 * 309.87348 * 16 14 13 34 34 H 1.08999 * 109.48891 * 181.62943 * 17 14 13 35 35 H 1.09003 * 109.50964 * 61.56987 * 17 14 13 36 36 H 1.00900 * 111.00048 * 295.44947 * 18 17 14 37 37 H 1.09001 * 109.47560 * 179.88920 * 21 19 18 38 38 H 1.08998 * 109.47567 * 299.89618 * 21 19 18 39 39 H 1.09006 * 109.46978 * 59.89252 * 21 19 18 40 40 H 1.09004 * 109.46524 * 56.32186 * 24 22 13 41 41 H 1.08989 * 109.47194 * 176.32598 * 24 22 13 42 42 H 1.09001 * 109.47105 * 296.32725 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9747 -0.8556 5 6 3.5443 1.4434 -0.0904 6 1 4.1345 1.8154 0.7339 7 6 4.1670 0.9693 -1.2254 8 7 3.4483 0.5156 -2.2291 9 14 6.0317 0.9698 -1.3372 10 1 6.5595 -0.3149 -0.8115 11 1 6.4426 1.1307 -2.7550 12 1 6.5753 2.0941 -0.5336 13 7 1.6235 2.1091 1.2410 14 6 2.5803 1.8483 2.3256 15 1 3.5497 2.2731 2.0652 16 6 2.7220 0.3385 2.5290 17 6 2.0709 2.4920 3.6173 18 7 1.8985 3.9361 3.4070 19 6 0.9418 4.1971 2.3224 20 1 -0.0277 3.7722 2.5826 21 6 0.8000 5.7068 2.1190 22 6 1.4512 3.5534 1.0306 23 1 0.7293 3.7209 0.2313 24 6 2.7940 4.1769 0.6447 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.8864 0.1824 -3.0278 31 1 3.2444 -0.0955 1.6764 32 1 3.2898 0.1463 3.4393 33 1 1.7327 -0.1108 2.6162 34 1 2.7930 2.3245 4.4164 35 1 1.1142 2.0479 3.8927 36 1 2.7842 4.3831 3.2232 37 1 0.0919 5.9000 1.3132 38 1 0.4372 6.1650 3.0391 39 1 1.7700 6.1312 1.8597 40 1 3.1888 3.6722 -0.2372 41 1 2.6535 5.2352 0.4253 42 1 3.4964 4.0672 1.4710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401436093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = -2.606079 kcal Electronic energy + Delta-G solvation = -19645.368480 eV Core-core repulsion = 17045.867308 eV Total energy + Delta-G solvation = -2599.501172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20045 -37.24177 -34.54160 -33.95513 -32.88740 -30.23797 -29.01765 -28.41215 -25.68898 -25.02781 -24.11530 -22.18562 -21.04254 -19.86279 -18.33183 -17.00448 -16.67514 -15.99647 -15.93461 -15.51773 -15.25699 -14.89238 -14.47698 -13.99124 -13.78568 -13.25642 -13.23242 -13.10494 -12.87447 -12.80197 -12.77464 -12.56855 -12.40368 -12.28068 -12.17013 -12.13714 -11.67349 -11.56718 -11.28050 -11.23919 -11.10439 -10.73848 -10.29140 -9.20836 -8.71649 -7.99850 -6.14124 1.34925 1.38548 1.44506 2.41182 3.21522 3.32190 3.46853 4.09882 4.22609 4.33108 4.39566 4.45498 4.60090 4.63902 4.66529 4.70865 4.79124 4.83573 4.93994 4.94525 5.01319 5.08727 5.12162 5.17803 5.25999 5.27688 5.36374 5.43766 5.50355 5.57128 5.63773 5.66518 5.76450 5.89491 6.11632 6.17791 6.25754 6.45482 6.57137 6.82498 7.04930 7.52327 8.98084 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.010062 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.358744 B = 2782.107379 C = 3086.330950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.228 3.772 4 H -0.010 1.010 5 C -0.522 4.522 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.935 3.065 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.272 1.272 13 N -0.520 5.520 14 C 0.053 3.947 15 H 0.033 0.967 16 C -0.137 4.137 17 C 0.069 3.931 18 N -0.676 5.676 19 C 0.098 3.902 20 H 0.075 0.925 21 C -0.137 4.137 22 C 0.055 3.945 23 H 0.056 0.944 24 C -0.172 4.172 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.256 0.744 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.336 0.664 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 5.432 9.493 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.120 3.880 4 H 0.008 0.992 5 C -0.561 4.561 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.762 3.238 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.244 5.244 14 C -0.057 4.057 15 H 0.051 0.949 16 C -0.194 4.194 17 C -0.061 4.061 18 N -0.305 5.305 19 C -0.013 4.013 20 H 0.094 0.906 21 C -0.195 4.195 22 C -0.056 4.056 23 H 0.074 0.926 24 C -0.231 4.231 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.051 5.240 9.979 11.977 hybrid contribution 2.458 -0.245 -2.028 3.196 sum -1.593 4.995 7.950 9.523 Atomic orbital electron populations 1.21557 0.97109 0.99437 1.00176 1.21839 0.94058 0.98804 1.00934 1.18921 0.91992 0.91144 0.85908 0.99165 1.22007 0.93527 1.39678 1.00879 0.91686 1.25556 1.00821 0.95782 0.95968 1.70057 1.36006 1.43345 1.06217 0.85920 0.82808 0.78315 0.76752 1.20511 1.21805 1.19662 1.62710 1.46187 1.08248 1.07251 1.22211 0.94289 0.96850 0.92350 0.94888 1.21974 1.01156 0.95342 1.00954 1.22144 1.01502 0.87245 0.95181 1.60981 1.14836 1.10903 1.43779 1.21552 0.96025 0.96118 0.87556 0.90642 1.21777 1.02129 0.93315 1.02266 1.22314 0.96035 0.88838 0.98412 0.92572 1.22427 0.98494 1.00406 1.01747 0.93913 0.92403 0.95776 0.91680 0.94045 0.93462 0.92628 0.92184 0.92637 0.89661 0.90997 0.84551 0.91753 0.91062 0.92470 0.93137 0.92107 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.79 71.98 0.70 -4.32 16 2 C -0.12 -5.47 5.00 30.59 0.15 -5.32 16 3 C 0.23 10.82 1.20 44.17 0.05 10.88 16 4 H -0.01 -0.54 7.69 -2.38 -0.02 -0.56 16 5 C -0.52 -26.35 3.98 25.60 0.10 -26.24 16 6 H 0.07 3.26 4.85 -2.91 -0.01 3.25 16 7 C 0.02 0.95 5.31 84.65 0.45 1.40 16 8 N -0.92 -52.12 11.71 21.44 0.25 -51.87 16 9 Si 0.93 42.98 29.54 68.60 2.03 45.01 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.52 -20.45 3.82 -824.83 -3.15 -23.60 16 14 C 0.05 1.90 1.61 44.92 0.07 1.97 16 15 H 0.03 1.34 4.11 -2.39 -0.01 1.33 16 16 C -0.14 -4.84 7.37 71.98 0.53 -4.31 16 17 C 0.07 2.02 5.99 86.31 0.52 2.53 16 18 N -0.68 -18.74 6.48 -491.13 -3.18 -21.93 16 19 C 0.10 2.82 2.95 44.92 0.13 2.95 16 20 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 21 C -0.14 -3.18 9.06 71.98 0.65 -2.53 16 22 C 0.05 1.95 2.40 44.92 0.11 2.06 16 23 H 0.06 2.16 7.98 -2.39 -0.02 2.14 16 24 C -0.17 -6.28 7.23 71.98 0.52 -5.76 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.20 7.71 -2.39 -0.02 2.18 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 2.88 3.88 -2.39 -0.01 2.87 16 29 H 0.04 2.21 6.43 -2.39 -0.02 2.19 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.05 2.34 4.95 -2.39 -0.01 2.33 16 32 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 33 H 0.05 1.93 7.27 -2.39 -0.02 1.91 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.34 9.18 7.10 -89.69 -0.64 8.54 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.31 6.49 -2.38 -0.02 1.30 16 40 H 0.05 2.28 5.70 -2.38 -0.01 2.26 16 41 H 0.06 1.91 6.62 -2.39 -0.02 1.89 16 42 H 0.05 1.63 5.12 -2.39 -0.01 1.61 16 Total: -1.00 -55.44 294.07 0.31 -55.14 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.37 Total: 23.95 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.99 Total: -26.70 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -6.08 Total: -97.40 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -55.44 0.31 -55.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401436093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.530 kcal (2) G-P(sol) polarization free energy of solvation -55.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds