Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 N 1.46898 * 109.47166 * 239.99859 * 2 1 3 5 5 C 1.46908 * 110.99902 * 292.32902 * 4 2 1 6 6 C 1.50701 * 109.46837 * 298.15791 * 5 4 2 7 7 H 1.08004 * 119.99905 * 4.39879 * 6 5 4 8 8 C 1.37879 * 120.00110 * 184.39246 * 6 5 4 9 9 N 1.31514 * 119.99749 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47051 * 90.00373 * 10 8 6 12 12 H 1.48502 * 109.47090 * 210.00525 * 10 8 6 13 13 H 1.48497 * 109.47039 * 330.00287 * 10 8 6 14 14 C 1.46903 * 110.99915 * 56.27816 * 4 2 1 15 15 H 1.08997 * 112.85032 * 46.49025 * 14 4 2 16 16 C 1.53786 * 113.61354 * 275.29289 * 14 4 2 17 17 C 1.53777 * 87.08099 * 270.88384 * 16 14 4 18 18 H 1.09003 * 113.61821 * 89.11556 * 17 16 14 19 19 N 1.46907 * 113.61457 * 219.93750 * 17 16 14 20 20 C 1.53778 * 113.61359 * 177.68447 * 14 4 2 21 21 C 1.53004 * 113.61448 * 203.66383 * 20 14 4 22 22 C 1.53000 * 113.61870 * 334.56966 * 20 14 4 23 23 H 1.08998 * 109.47100 * 54.04903 * 1 2 3 24 24 H 1.08994 * 109.47843 * 174.05497 * 1 2 3 25 25 H 1.09000 * 109.46884 * 294.05711 * 1 2 3 26 26 H 1.09009 * 109.47290 * 120.00392 * 2 1 3 27 27 H 1.09001 * 109.47017 * 66.73611 * 3 2 1 28 28 H 1.08997 * 109.47387 * 186.73587 * 3 2 1 29 29 H 1.08999 * 109.47256 * 306.74125 * 3 2 1 30 30 H 1.08996 * 109.47241 * 58.16254 * 5 4 2 31 31 H 1.09007 * 109.47057 * 178.16525 * 5 4 2 32 32 H 0.97001 * 120.00009 * 180.02562 * 9 8 6 33 33 H 1.08999 * 113.61443 * 25.42880 * 16 14 4 34 34 H 1.08996 * 113.61273 * 156.33343 * 16 14 4 35 35 H 1.00900 * 110.99702 * 280.49549 * 19 17 16 36 36 H 1.00899 * 110.99507 * 44.44817 * 19 17 16 37 37 H 1.09000 * 109.46759 * 59.99885 * 21 20 14 38 38 H 1.08999 * 109.46954 * 180.02562 * 21 20 14 39 39 H 1.09003 * 109.46639 * 300.00239 * 21 20 14 40 40 H 1.08999 * 109.46885 * 68.36717 * 22 20 14 41 41 H 1.08997 * 109.47216 * 188.37309 * 22 20 14 42 42 H 1.09000 * 109.46830 * 308.37404 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.7038 -2.1262 -1.1453 6 6 2.3936 -2.7480 0.0416 7 1 2.9470 -2.1274 0.7308 8 6 2.3182 -4.1092 0.2477 9 7 1.6447 -4.8650 -0.5918 10 14 3.1726 -4.8799 1.7192 11 1 2.2414 -4.9040 2.8756 12 1 3.5812 -6.2676 1.3836 13 1 4.3746 -4.0807 2.0681 14 6 1.4773 -0.0797 -2.4194 15 1 1.5473 1.0080 -2.4139 16 6 0.0848 -0.6054 -2.8061 17 6 0.8074 -1.6976 -3.6121 18 1 1.0267 -2.5947 -3.0330 19 7 0.1724 -1.9934 -4.9034 20 6 1.9967 -0.7238 -3.7156 21 6 1.9263 0.2025 -4.9313 22 6 3.3603 -1.4001 -3.5603 23 1 -0.3633 0.6033 -0.8319 24 1 -0.3634 -1.0220 -0.1064 25 1 -0.3633 0.4189 0.9384 26 1 1.8934 -0.5139 0.8900 27 1 1.7785 1.9203 0.9441 28 1 3.1234 1.4448 -0.1205 29 1 1.5816 1.9900 -0.8235 30 1 0.6261 -2.2575 -1.0491 31 1 2.0486 -2.6090 -2.0598 32 1 1.5913 -5.8226 -0.4467 33 1 -0.4862 -0.9915 -1.9617 34 1 -0.4871 0.0869 -3.4240 35 1 -0.6287 -2.5948 -4.7831 36 1 -0.0822 -1.1436 -5.3841 37 1 2.5287 1.0917 -4.7458 38 1 2.3087 -0.3195 -5.8084 39 1 0.8908 0.4950 -5.1056 40 1 3.2594 -2.2796 -2.9245 41 1 3.7305 -1.7007 -4.5404 42 1 4.0625 -0.7015 -3.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405258732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = 41.096399 kcal Electronic energy + Delta-G solvation = -19385.899791 eV Core-core repulsion = 16788.293701 eV Total energy + Delta-G solvation = -2597.606090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58507 -36.07469 -32.82312 -31.78766 -30.50778 -29.25439 -27.03833 -26.83082 -26.10231 -23.30864 -21.85282 -21.54441 -19.16497 -17.37170 -16.26411 -15.53441 -15.43685 -14.58121 -14.40016 -13.87607 -13.61113 -13.46079 -13.16429 -12.60225 -12.26879 -12.14340 -12.09127 -11.70126 -11.62643 -11.31080 -11.24443 -11.02033 -10.87385 -10.84628 -10.59913 -10.49444 -10.00251 -9.90672 -9.70131 -9.62898 -9.35021 -8.77655 -8.31965 -8.05666 -7.09031 -6.02398 -4.01682 3.31529 3.38626 3.42507 4.43092 4.76515 4.98406 5.06504 5.31475 5.37549 5.39823 5.56789 5.68226 5.74600 5.84351 5.94495 5.96616 6.06812 6.11944 6.15064 6.26204 6.31922 6.33375 6.42579 6.45165 6.53234 6.63100 6.73931 6.77613 6.85086 6.91852 6.99461 7.10810 7.44977 7.55943 7.64188 7.82482 7.90551 8.15132 8.30636 8.62794 9.04696 9.61535 11.08162 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.009562 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.827902 B = 2927.646251 C = 3524.772586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 C -0.141 4.141 4 N -0.505 5.505 5 C 0.169 3.831 6 C -0.508 4.508 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.078 3.922 15 H 0.074 0.926 16 C -0.221 4.221 17 C 0.060 3.940 18 H 0.140 0.860 19 N -0.839 5.839 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.129 4.129 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.044 0.956 30 H -0.006 1.006 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.335 0.665 36 H 0.328 0.672 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 9.589 -4.631 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 C -0.199 4.199 4 N -0.227 5.227 5 C 0.045 3.955 6 C -0.546 4.546 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.032 4.032 15 H 0.092 0.908 16 C -0.263 4.263 17 C -0.051 4.051 18 H 0.157 0.843 19 N -0.367 5.367 20 C -0.075 4.075 21 C -0.174 4.174 22 C -0.186 4.186 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.012 0.988 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.183 9.087 -4.866 10.376 hybrid contribution -1.484 -0.054 1.237 1.933 sum -2.667 9.033 -3.629 10.094 Atomic orbital electron populations 1.22604 0.98934 1.02001 1.00317 1.21567 0.91778 0.93738 0.95598 1.21881 1.01547 0.96385 1.00065 1.62312 1.56274 1.05434 0.98672 1.20430 0.94707 0.81615 0.98755 1.21220 1.31905 0.92059 1.09441 0.92107 1.24931 0.95648 0.97244 0.96590 1.69929 1.41840 1.05380 1.36517 0.86578 0.79933 0.78568 0.82828 1.20930 1.21310 1.19844 1.22688 0.91796 0.97379 0.91384 0.90769 1.24613 0.99319 1.00563 1.01790 1.24017 0.94013 0.98502 0.88562 0.84324 1.58767 1.34545 1.20858 1.22486 1.22036 0.95781 0.95603 0.94056 1.21432 1.00404 0.98394 0.97187 1.21725 0.94919 1.01737 1.00191 0.93272 0.91738 0.93843 0.89015 0.93463 0.92236 0.93702 0.98813 0.91870 0.92968 0.90468 0.91802 0.85293 0.85884 0.93118 0.92254 0.93592 0.90010 0.94561 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 7.49 37.16 0.28 -2.88 16 2 C 0.08 1.54 2.75 -67.72 -0.19 1.35 16 3 C -0.14 -2.19 8.95 37.16 0.33 -1.86 16 4 N -0.51 -10.25 4.05 -219.17 -0.89 -11.14 16 5 C 0.17 4.06 2.38 -4.97 -0.01 4.05 16 6 C -0.51 -13.64 8.48 -34.44 -0.29 -13.93 16 7 H 0.06 1.64 6.68 -52.48 -0.35 1.29 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.38 2.84 -66.90 -0.19 1.19 16 15 H 0.07 1.24 6.24 -51.93 -0.32 0.91 16 16 C -0.22 -3.75 5.25 -25.92 -0.14 -3.89 16 17 C 0.06 1.08 3.87 -66.75 -0.26 0.82 16 18 H 0.14 3.10 4.63 -51.93 -0.24 2.86 16 19 N -0.84 -13.03 9.33 -3.85 -0.04 -13.06 16 20 C -0.07 -1.25 1.31 -153.55 -0.20 -1.46 16 21 C -0.12 -1.64 8.19 37.16 0.30 -1.33 16 22 C -0.13 -2.41 8.50 37.16 0.32 -2.09 16 23 H 0.05 0.80 6.18 -51.93 -0.32 0.48 16 24 H 0.06 1.29 5.55 -51.93 -0.29 1.00 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.93 6.30 -51.92 -0.33 1.60 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.65 6.61 -51.93 -0.34 0.31 16 30 H -0.01 -0.15 4.88 -51.93 -0.25 -0.40 16 31 H 0.06 1.61 2.76 -51.93 -0.14 1.47 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 1.45 4.41 -51.93 -0.23 1.22 16 34 H 0.06 0.96 7.59 -51.93 -0.39 0.57 16 35 H 0.33 4.90 9.08 -39.29 -0.36 4.54 16 36 H 0.33 4.44 6.99 -39.29 -0.27 4.17 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.05 0.59 6.18 -51.93 -0.32 0.27 16 40 H 0.08 1.81 5.20 -51.93 -0.27 1.54 16 41 H 0.04 0.62 8.03 -51.93 -0.42 0.21 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -27.32 297.39 -7.39 -34.71 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.52 Total: 12.20 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.14 Total: -18.57 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.19 Total: -49.17 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.32 -7.39 -34.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.806 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds