Wall clock time and date at job start Mon Mar 30 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 N 1.46898 * 109.47166 * 239.99859 * 2 1 3 5 5 C 1.46908 * 110.99902 * 292.32902 * 4 2 1 6 6 C 1.50701 * 109.46837 * 298.15791 * 5 4 2 7 7 H 1.08004 * 119.99905 * 4.39879 * 6 5 4 8 8 C 1.37879 * 120.00110 * 184.39246 * 6 5 4 9 9 N 1.31514 * 119.99749 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47051 * 90.00373 * 10 8 6 12 12 H 1.48502 * 109.47090 * 210.00525 * 10 8 6 13 13 H 1.48497 * 109.47039 * 330.00287 * 10 8 6 14 14 C 1.46903 * 110.99915 * 56.27816 * 4 2 1 15 15 H 1.08997 * 112.85032 * 46.49025 * 14 4 2 16 16 C 1.53786 * 113.61354 * 275.29289 * 14 4 2 17 17 C 1.53777 * 87.08099 * 270.88384 * 16 14 4 18 18 H 1.09003 * 113.61821 * 89.11556 * 17 16 14 19 19 N 1.46907 * 113.61457 * 219.93750 * 17 16 14 20 20 C 1.53778 * 113.61359 * 177.68447 * 14 4 2 21 21 C 1.53004 * 113.61448 * 203.66383 * 20 14 4 22 22 C 1.53000 * 113.61870 * 334.56966 * 20 14 4 23 23 H 1.08998 * 109.47100 * 54.04903 * 1 2 3 24 24 H 1.08994 * 109.47843 * 174.05497 * 1 2 3 25 25 H 1.09000 * 109.46884 * 294.05711 * 1 2 3 26 26 H 1.09009 * 109.47290 * 120.00392 * 2 1 3 27 27 H 1.09001 * 109.47017 * 66.73611 * 3 2 1 28 28 H 1.08997 * 109.47387 * 186.73587 * 3 2 1 29 29 H 1.08999 * 109.47256 * 306.74125 * 3 2 1 30 30 H 1.08996 * 109.47241 * 58.16254 * 5 4 2 31 31 H 1.09007 * 109.47057 * 178.16525 * 5 4 2 32 32 H 0.97001 * 120.00009 * 180.02562 * 9 8 6 33 33 H 1.08999 * 113.61443 * 25.42880 * 16 14 4 34 34 H 1.08996 * 113.61273 * 156.33343 * 16 14 4 35 35 H 1.00900 * 110.99702 * 280.49549 * 19 17 16 36 36 H 1.00899 * 110.99507 * 44.44817 * 19 17 16 37 37 H 1.09000 * 109.46759 * 59.99885 * 21 20 14 38 38 H 1.08999 * 109.46954 * 180.02562 * 21 20 14 39 39 H 1.09003 * 109.46639 * 300.00239 * 21 20 14 40 40 H 1.08999 * 109.46885 * 68.36717 * 22 20 14 41 41 H 1.08997 * 109.47216 * 188.37309 * 22 20 14 42 42 H 1.09000 * 109.46830 * 308.37404 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.7038 -2.1262 -1.1453 6 6 2.3936 -2.7480 0.0416 7 1 2.9470 -2.1274 0.7308 8 6 2.3182 -4.1092 0.2477 9 7 1.6447 -4.8650 -0.5918 10 14 3.1726 -4.8799 1.7192 11 1 2.2414 -4.9040 2.8756 12 1 3.5812 -6.2676 1.3836 13 1 4.3746 -4.0807 2.0681 14 6 1.4773 -0.0797 -2.4194 15 1 1.5473 1.0080 -2.4139 16 6 0.0848 -0.6054 -2.8061 17 6 0.8074 -1.6976 -3.6121 18 1 1.0267 -2.5947 -3.0330 19 7 0.1724 -1.9934 -4.9034 20 6 1.9967 -0.7238 -3.7156 21 6 1.9263 0.2025 -4.9313 22 6 3.3603 -1.4001 -3.5603 23 1 -0.3633 0.6033 -0.8319 24 1 -0.3634 -1.0220 -0.1064 25 1 -0.3633 0.4189 0.9384 26 1 1.8934 -0.5139 0.8900 27 1 1.7785 1.9203 0.9441 28 1 3.1234 1.4448 -0.1205 29 1 1.5816 1.9900 -0.8235 30 1 0.6261 -2.2575 -1.0491 31 1 2.0486 -2.6090 -2.0598 32 1 1.5913 -5.8226 -0.4467 33 1 -0.4862 -0.9915 -1.9617 34 1 -0.4871 0.0869 -3.4240 35 1 -0.6287 -2.5948 -4.7831 36 1 -0.0822 -1.1436 -5.3841 37 1 2.5287 1.0917 -4.7458 38 1 2.3087 -0.3195 -5.8084 39 1 0.8908 0.4950 -5.1056 40 1 3.2594 -2.2796 -2.9245 41 1 3.7305 -1.7007 -4.5404 42 1 4.0625 -0.7015 -3.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405258732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:21 Heat of formation + Delta-G solvation = 22.286264 kcal Electronic energy + Delta-G solvation = -19386.715460 eV Core-core repulsion = 16788.293701 eV Total energy + Delta-G solvation = -2598.421759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.04927 -37.56276 -34.85918 -33.14805 -32.02242 -30.80969 -28.61030 -28.14134 -27.72881 -25.07193 -23.32021 -23.05085 -20.77183 -18.84712 -18.17675 -17.06797 -16.88445 -16.30264 -16.07941 -15.43111 -15.03554 -14.89618 -14.59915 -14.26654 -13.78540 -13.66467 -13.46837 -13.03042 -13.01433 -12.94399 -12.70651 -12.63700 -12.53606 -12.31233 -12.30607 -11.96750 -11.81534 -11.58298 -11.25714 -11.16858 -10.81162 -10.66629 -10.27344 -9.36538 -8.72526 -8.14497 -6.20156 1.38582 1.40082 1.50552 2.41933 3.16917 3.30310 3.64044 3.69417 3.97576 4.02301 4.16483 4.29283 4.41309 4.49298 4.56615 4.68715 4.70699 4.80618 4.87472 4.88366 4.97209 4.98969 5.06286 5.13498 5.18597 5.24342 5.26121 5.28241 5.38312 5.42244 5.52910 5.59240 5.62160 5.73268 5.92515 6.18486 6.33917 6.55843 6.75448 6.87508 6.98013 7.47174 8.95305 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.009562 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.827902 B = 2927.646251 C = 3524.772586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 C -0.130 4.130 4 N -0.514 5.514 5 C 0.191 3.809 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.954 3.046 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.075 3.925 15 H 0.097 0.903 16 C -0.207 4.207 17 C 0.058 3.942 18 H 0.089 0.911 19 N -0.837 5.837 20 C -0.070 4.070 21 C -0.109 4.109 22 C -0.122 4.122 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.061 0.939 30 H -0.032 1.032 31 H 0.050 0.950 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.339 0.661 36 H 0.345 0.655 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 11.934 -5.250 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.033 4.033 3 C -0.187 4.187 4 N -0.235 5.235 5 C 0.066 3.934 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.780 3.220 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.035 4.035 15 H 0.115 0.885 16 C -0.249 4.249 17 C -0.053 4.053 18 H 0.106 0.894 19 N -0.366 5.366 20 C -0.071 4.071 21 C -0.167 4.167 22 C -0.179 4.179 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.080 0.920 30 H -0.015 1.015 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.285 11.456 -5.488 12.767 hybrid contribution -1.460 -0.784 1.412 2.177 sum -2.745 10.672 -4.075 11.749 Atomic orbital electron populations 1.22467 0.97970 1.00268 1.01968 1.21626 0.92605 0.95388 0.93720 1.21774 1.01170 0.93834 1.01938 1.62220 1.57059 1.03663 1.00592 1.20028 0.92401 0.84009 0.96973 1.21593 1.31588 0.92440 1.10234 0.92762 1.25711 0.96424 0.97876 0.99188 1.70058 1.43261 1.05460 1.38203 0.85608 0.79031 0.77619 0.79728 1.20284 1.21026 1.19274 1.22778 0.92165 0.98218 0.90310 0.88518 1.24519 0.98836 1.00366 1.01158 1.23612 0.95435 0.96978 0.89299 0.89350 1.58670 1.34893 1.21840 1.21228 1.22109 0.94005 0.95645 0.95330 1.21400 1.02008 0.98023 0.95261 1.21605 0.96383 1.00158 0.99788 0.91544 0.95195 0.92069 0.92194 0.91406 0.92721 0.92004 1.01495 0.93268 0.93073 0.92699 0.88758 0.84830 0.84056 0.91546 0.91989 0.91756 0.94220 0.93460 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 7.49 71.98 0.54 -5.25 16 2 C 0.08 2.79 2.75 44.91 0.12 2.92 16 3 C -0.13 -3.70 8.95 71.98 0.64 -3.05 16 4 N -0.51 -21.04 4.05 -847.32 -3.43 -24.46 16 5 C 0.19 9.63 2.38 85.56 0.20 9.83 16 6 C -0.52 -29.12 8.48 25.60 0.22 -28.90 16 7 H 0.05 3.03 6.68 -2.91 -0.02 3.01 16 8 C 0.01 0.34 5.46 84.66 0.46 0.80 16 9 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 10 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.08 2.54 2.84 45.44 0.13 2.67 16 15 H 0.10 2.86 6.24 -2.39 -0.01 2.84 16 16 C -0.21 -6.76 5.25 31.12 0.16 -6.59 16 17 C 0.06 2.10 3.87 45.53 0.18 2.28 16 18 H 0.09 4.19 4.63 -2.39 -0.01 4.18 16 19 N -0.84 -24.99 9.33 -166.09 -1.55 -26.54 16 20 C -0.07 -2.28 1.31 -51.56 -0.07 -2.35 16 21 C -0.11 -2.68 8.19 71.98 0.59 -2.09 16 22 C -0.12 -4.59 8.50 71.98 0.61 -3.98 16 23 H 0.07 2.02 6.18 -2.39 -0.01 2.01 16 24 H 0.03 1.22 5.55 -2.39 -0.01 1.21 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 2.58 6.30 -2.38 -0.02 2.57 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.56 6.61 -2.39 -0.02 1.54 16 30 H -0.03 -1.78 4.88 -2.39 -0.01 -1.79 16 31 H 0.05 2.68 2.76 -2.38 -0.01 2.68 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.05 2.07 4.41 -2.39 -0.01 2.06 16 34 H 0.09 2.50 7.59 -2.39 -0.02 2.48 16 35 H 0.34 9.72 9.08 -89.69 -0.81 8.91 16 36 H 0.34 8.33 6.99 -89.69 -0.63 7.70 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 39 H 0.06 1.35 6.18 -2.39 -0.01 1.33 16 40 H 0.04 1.83 5.20 -2.39 -0.01 1.81 16 41 H 0.05 1.61 8.03 -2.39 -0.02 1.60 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -61.62 297.39 0.72 -60.90 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.40 Total: 32.08 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 3.79 Total: -33.72 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.69 Total: -106.22 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.62 0.72 -60.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.189 kcal (2) G-P(sol) polarization free energy of solvation -61.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds