Wall clock time and date at job start Mon Mar 30 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 N 1.46901 * 109.46897 * 119.99984 * 2 1 3 5 5 C 1.46902 * 110.99558 * 174.99959 * 4 2 1 6 6 C 1.50698 * 109.47212 * 288.10392 * 5 4 2 7 7 H 1.07998 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99829 * 180.28056 * 6 5 4 9 9 N 1.31512 * 119.99911 * 359.71954 * 8 6 5 10 10 Si 1.86804 * 119.99703 * 179.72401 * 8 6 5 11 11 H 1.48504 * 109.46975 * 89.99992 * 10 8 6 12 12 H 1.48502 * 109.46530 * 209.99769 * 10 8 6 13 13 H 1.48494 * 109.47000 * 329.99549 * 10 8 6 14 14 C 1.46897 * 111.00047 * 298.95241 * 4 2 1 15 15 H 1.09002 * 112.84593 * 306.75270 * 14 4 2 16 16 C 1.53773 * 113.61563 * 77.94994 * 14 4 2 17 17 C 1.53948 * 87.02152 * 139.95579 * 16 14 4 18 18 H 1.08999 * 113.54155 * 89.19170 * 17 16 14 19 19 N 1.46904 * 113.73876 * 220.05860 * 17 16 14 20 20 C 1.53777 * 113.61548 * 175.56111 * 14 4 2 21 21 C 1.53002 * 113.61426 * 334.56093 * 20 14 4 22 22 C 1.52995 * 113.61793 * 105.47157 * 20 14 4 23 23 H 1.09000 * 109.47162 * 299.99886 * 1 2 3 24 24 H 1.08997 * 109.47233 * 60.00430 * 1 2 3 25 25 H 1.09000 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47350 * 239.99436 * 2 1 3 27 27 H 1.08997 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46894 * 299.99806 * 3 2 1 29 29 H 1.08998 * 109.47385 * 59.99738 * 3 2 1 30 30 H 1.09012 * 109.46926 * 168.10353 * 5 4 2 31 31 H 1.09000 * 109.47378 * 48.10954 * 5 4 2 32 32 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 33 33 H 1.09005 * 113.61316 * 254.53409 * 16 14 4 34 34 H 1.09002 * 113.61432 * 25.42650 * 16 14 4 35 35 H 1.00900 * 111.00044 * 277.58787 * 19 17 16 36 36 H 1.00892 * 111.00598 * 41.55102 * 19 17 16 37 37 H 1.09002 * 109.46717 * 65.72450 * 21 20 14 38 38 H 1.08997 * 109.47327 * 185.72413 * 21 20 14 39 39 H 1.08998 * 109.46909 * 305.73218 * 21 20 14 40 40 H 1.08996 * 109.47679 * 59.99882 * 22 20 14 41 41 H 1.09004 * 109.47264 * 180.02562 * 22 20 14 42 42 H 1.09004 * 109.47125 * 299.99287 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4831 -0.8165 1.1751 6 6 3.8839 -1.8349 0.1392 7 1 3.1271 -2.3394 -0.4433 8 6 5.2165 -2.1266 -0.0615 9 7 6.1381 -1.5120 0.6473 10 14 5.7127 -3.3947 -1.3403 11 1 5.9186 -2.7236 -2.6489 12 1 6.9742 -4.0551 -0.9187 13 1 4.6399 -4.4132 -1.4695 14 6 1.5691 -0.0121 2.4209 15 1 1.8180 1.0491 2.4305 16 6 0.1038 -0.3045 2.7843 17 6 0.5654 -0.3736 4.2513 18 1 0.5384 0.5890 4.7620 19 7 -0.0755 -1.4468 5.0230 20 6 1.9571 -0.7475 3.7145 21 6 2.1577 -2.2527 3.5273 22 6 3.1062 -0.0837 4.4759 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8371 -1.1365 2.1552 31 1 3.9254 0.1482 0.9264 32 1 7.0756 -1.7169 0.5059 33 1 -0.5715 0.5256 2.5767 34 1 -0.2609 -1.2554 2.3959 35 1 -0.9840 -1.1602 5.3556 36 1 -0.1403 -2.2942 4.4792 37 1 3.0192 -2.4269 2.8826 38 1 2.3292 -2.7198 4.4970 39 1 1.2677 -2.6835 3.0686 40 1 2.8208 0.9314 4.7520 41 1 3.3250 -0.6576 5.3764 42 1 3.9921 -0.0522 3.8415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405258734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:24 Heat of formation + Delta-G solvation = 22.478247 kcal Electronic energy + Delta-G solvation = -19166.508640 eV Core-core repulsion = 16568.095206 eV Total energy + Delta-G solvation = -2598.413434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12502 -36.34080 -32.86546 -32.02207 -30.17034 -29.79191 -26.90183 -26.45621 -26.20461 -22.74447 -22.11404 -21.81305 -18.98172 -17.57653 -16.12830 -15.69067 -15.44685 -14.99486 -14.41094 -13.77239 -13.61069 -13.17186 -13.03138 -12.78452 -12.63096 -12.24292 -12.00255 -11.59345 -11.56562 -11.26997 -11.21203 -11.00142 -10.89027 -10.75011 -10.57191 -10.38150 -10.19443 -10.01708 -9.82807 -9.66973 -9.30198 -8.98036 -8.34025 -8.25098 -7.09145 -5.97222 -3.97091 3.33651 3.40364 3.44419 4.46026 4.70333 4.98479 5.01778 5.13838 5.26429 5.34640 5.39008 5.65745 5.79798 5.82385 5.93410 5.93927 6.01724 6.07672 6.15160 6.28603 6.29904 6.34642 6.35631 6.52660 6.55534 6.60227 6.67843 6.77593 6.82080 6.91350 6.99847 7.19767 7.37804 7.47841 7.59125 7.68297 7.89410 8.23484 8.33539 8.66727 9.11270 9.66414 11.12996 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.008586 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.777094 B = 3260.452127 C = 3792.301059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 C -0.182 4.182 4 N -0.512 5.512 5 C 0.183 3.817 6 C -0.501 4.501 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.064 3.936 15 H 0.054 0.946 16 C -0.161 4.161 17 C 0.071 3.929 18 H 0.091 0.909 19 N -0.836 5.836 20 C -0.058 4.058 21 C -0.115 4.115 22 C -0.137 4.137 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.045 0.955 31 H -0.007 1.007 32 H 0.259 0.741 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.331 0.669 36 H 0.343 0.657 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.027 3.411 4.641 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 C -0.241 4.241 4 N -0.235 5.235 5 C 0.058 3.942 6 C -0.540 4.540 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.046 4.046 15 H 0.072 0.928 16 C -0.200 4.200 17 C -0.042 4.042 18 H 0.109 0.891 19 N -0.364 5.364 20 C -0.058 4.058 21 C -0.172 4.172 22 C -0.194 4.194 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.405 2.992 5.184 12.003 hybrid contribution 0.050 0.345 -1.561 1.599 sum -10.355 3.337 3.623 11.467 Atomic orbital electron populations 1.22109 0.96466 1.01410 1.00697 1.21504 0.93535 0.91856 0.95692 1.22429 1.02625 0.98810 1.00257 1.62550 1.15358 1.46967 0.98658 1.19935 0.80275 0.95687 0.98286 1.21175 0.91410 1.21878 1.19492 0.92195 1.24951 0.96653 0.96559 0.96406 1.69953 1.00495 1.42679 1.40729 0.86592 0.77927 0.81779 0.81672 1.20941 1.21385 1.19886 1.22939 0.94507 0.95682 0.91444 0.92848 1.23973 0.97083 1.01582 0.97409 1.23022 0.95986 0.94336 0.90817 0.89062 1.58670 1.26746 1.06722 1.44291 1.21873 0.93017 0.97118 0.93840 1.21457 1.03281 0.92065 1.00390 1.21774 0.98739 0.98892 0.99984 0.92371 0.93900 0.92701 0.89664 0.91671 0.93596 0.93624 0.93744 0.98933 0.93101 0.92561 0.89525 0.85695 0.84254 0.89711 0.93912 0.93284 0.93748 0.92932 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.26 37.16 0.31 -2.00 16 2 C 0.08 1.57 2.85 -67.72 -0.19 1.37 16 3 C -0.18 -3.26 8.59 37.16 0.32 -2.94 16 4 N -0.51 -10.37 3.81 -219.18 -0.83 -11.20 16 5 C 0.18 4.51 3.75 -4.98 -0.02 4.49 16 6 C -0.50 -13.67 8.52 -34.44 -0.29 -13.97 16 7 H 0.06 1.65 7.53 -52.49 -0.40 1.25 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 14 C 0.06 1.11 2.06 -66.91 -0.14 0.97 16 15 H 0.05 0.97 6.16 -51.93 -0.32 0.65 16 16 C -0.16 -2.31 4.83 -25.83 -0.12 -2.43 16 17 C 0.07 0.98 4.48 -66.81 -0.30 0.68 16 18 H 0.09 1.22 7.96 -51.93 -0.41 0.81 16 19 N -0.84 -10.40 9.29 -3.90 -0.04 -10.44 16 20 C -0.06 -0.96 0.71 -153.70 -0.11 -1.07 16 21 C -0.11 -2.07 7.23 37.16 0.27 -1.80 16 22 C -0.14 -2.30 9.06 37.15 0.34 -1.97 16 23 H 0.06 0.84 4.63 -51.93 -0.24 0.60 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.81 7.17 -51.93 -0.37 1.43 16 27 H 0.06 1.33 6.30 -51.93 -0.33 1.01 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.76 6.28 -51.93 -0.33 0.43 16 30 H 0.04 1.16 3.91 -51.92 -0.20 0.96 16 31 H -0.01 -0.19 5.98 -51.93 -0.31 -0.50 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 0.74 6.83 -51.93 -0.35 0.39 16 34 H 0.09 1.31 7.37 -51.93 -0.38 0.92 16 35 H 0.33 3.37 9.08 -39.29 -0.36 3.02 16 36 H 0.34 4.28 7.22 -39.30 -0.28 3.99 16 37 H 0.08 1.85 5.52 -51.93 -0.29 1.57 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.85 6.48 -51.93 -0.34 0.51 16 40 H 0.04 0.67 7.94 -51.93 -0.41 0.25 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.26 6.93 -51.93 -0.36 0.90 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -28.04 305.35 -7.53 -35.56 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.93 Total: 7.63 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -0.04 Total: -17.20 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.13 Total: -47.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.04 -7.53 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.043 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds