Wall clock time and date at job start Mon Mar 30 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47295 * 2 1 4 4 N 1.46901 * 109.46897 * 119.99984 * 2 1 3 5 5 C 1.46902 * 110.99558 * 174.99959 * 4 2 1 6 6 C 1.50698 * 109.47212 * 288.10392 * 5 4 2 7 7 H 1.07998 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99829 * 180.28056 * 6 5 4 9 9 N 1.31512 * 119.99911 * 359.71954 * 8 6 5 10 10 Si 1.86804 * 119.99703 * 179.72401 * 8 6 5 11 11 H 1.48504 * 109.46975 * 89.99992 * 10 8 6 12 12 H 1.48502 * 109.46530 * 209.99769 * 10 8 6 13 13 H 1.48494 * 109.47000 * 329.99549 * 10 8 6 14 14 C 1.46897 * 111.00047 * 298.95241 * 4 2 1 15 15 H 1.09002 * 112.84593 * 306.75270 * 14 4 2 16 16 C 1.53773 * 113.61563 * 77.94994 * 14 4 2 17 17 C 1.53948 * 87.02152 * 139.95579 * 16 14 4 18 18 H 1.08999 * 113.54155 * 89.19170 * 17 16 14 19 19 N 1.46904 * 113.73876 * 220.05860 * 17 16 14 20 20 C 1.53777 * 113.61548 * 175.56111 * 14 4 2 21 21 C 1.53002 * 113.61426 * 334.56093 * 20 14 4 22 22 C 1.52995 * 113.61793 * 105.47157 * 20 14 4 23 23 H 1.09000 * 109.47162 * 299.99886 * 1 2 3 24 24 H 1.08997 * 109.47233 * 60.00430 * 1 2 3 25 25 H 1.09000 * 109.47348 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47350 * 239.99436 * 2 1 3 27 27 H 1.08997 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46894 * 299.99806 * 3 2 1 29 29 H 1.08998 * 109.47385 * 59.99738 * 3 2 1 30 30 H 1.09012 * 109.46926 * 168.10353 * 5 4 2 31 31 H 1.09000 * 109.47378 * 48.10954 * 5 4 2 32 32 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 33 33 H 1.09005 * 113.61316 * 254.53409 * 16 14 4 34 34 H 1.09002 * 113.61432 * 25.42650 * 16 14 4 35 35 H 1.00900 * 111.00044 * 277.58787 * 19 17 16 36 36 H 1.00892 * 111.00598 * 41.55102 * 19 17 16 37 37 H 1.09002 * 109.46717 * 65.72450 * 21 20 14 38 38 H 1.08997 * 109.47327 * 185.72413 * 21 20 14 39 39 H 1.08998 * 109.46909 * 305.73218 * 21 20 14 40 40 H 1.08996 * 109.47679 * 59.99882 * 22 20 14 41 41 H 1.09004 * 109.47264 * 180.02562 * 22 20 14 42 42 H 1.09004 * 109.47125 * 299.99287 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4831 -0.8165 1.1751 6 6 3.8839 -1.8349 0.1392 7 1 3.1271 -2.3394 -0.4433 8 6 5.2165 -2.1266 -0.0615 9 7 6.1381 -1.5120 0.6473 10 14 5.7127 -3.3947 -1.3403 11 1 5.9186 -2.7236 -2.6489 12 1 6.9742 -4.0551 -0.9187 13 1 4.6399 -4.4132 -1.4695 14 6 1.5691 -0.0121 2.4209 15 1 1.8180 1.0491 2.4305 16 6 0.1038 -0.3045 2.7843 17 6 0.5654 -0.3736 4.2513 18 1 0.5384 0.5890 4.7620 19 7 -0.0755 -1.4468 5.0230 20 6 1.9571 -0.7475 3.7145 21 6 2.1577 -2.2527 3.5273 22 6 3.1062 -0.0837 4.4759 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.8371 -1.1365 2.1552 31 1 3.9254 0.1482 0.9264 32 1 7.0756 -1.7169 0.5059 33 1 -0.5715 0.5256 2.5767 34 1 -0.2609 -1.2554 2.3959 35 1 -0.9840 -1.1602 5.3556 36 1 -0.1403 -2.2942 4.4792 37 1 3.0192 -2.4269 2.8826 38 1 2.3292 -2.7198 4.4970 39 1 1.2677 -2.6835 3.0686 40 1 2.8208 0.9314 4.7520 41 1 3.3250 -0.6576 5.3764 42 1 3.9921 -0.0522 3.8415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405258734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:24 Heat of formation + Delta-G solvation = 3.380358 kcal Electronic energy + Delta-G solvation = -19167.336787 eV Core-core repulsion = 16568.095206 eV Total energy + Delta-G solvation = -2599.241580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48372 -37.83045 -34.89323 -33.30427 -31.74425 -31.15885 -28.32543 -28.12727 -27.86013 -24.23464 -23.84096 -23.14839 -20.43523 -18.93356 -18.25241 -17.05060 -16.81995 -16.61099 -16.07395 -15.23893 -15.08483 -14.59033 -14.55393 -14.18655 -14.07564 -13.82574 -13.53144 -13.17130 -12.96840 -12.85900 -12.72795 -12.57657 -12.46262 -12.32611 -12.22542 -11.97471 -11.80276 -11.58662 -11.44043 -11.26215 -10.76039 -10.73132 -10.45017 -9.31071 -8.77470 -8.13179 -6.20644 1.39069 1.40001 1.51088 2.42215 3.18570 3.38999 3.67687 3.72148 3.90481 4.00512 4.08642 4.25209 4.37110 4.46452 4.56839 4.60328 4.73001 4.80934 4.87592 4.89361 4.94362 5.02621 5.04288 5.09505 5.13857 5.19656 5.24677 5.34275 5.38765 5.40177 5.53256 5.59449 5.63925 5.74357 5.87580 6.21921 6.36830 6.56217 6.79091 6.88365 6.97723 7.47686 8.96279 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.008586 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.777094 B = 3260.452127 C = 3792.301059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 C -0.173 4.173 4 N -0.514 5.514 5 C 0.203 3.797 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.957 3.043 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.052 3.948 15 H 0.049 0.951 16 C -0.143 4.143 17 C 0.092 3.908 18 H 0.107 0.893 19 N -0.837 5.837 20 C -0.070 4.070 21 C -0.102 4.102 22 C -0.132 4.132 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.027 0.973 31 H -0.041 1.041 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.349 0.651 36 H 0.344 0.656 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 3.602 5.001 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 C -0.231 4.231 4 N -0.237 5.237 5 C 0.077 3.923 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.783 3.217 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.191 1.191 14 C -0.057 4.057 15 H 0.067 0.933 16 C -0.183 4.183 17 C -0.021 4.021 18 H 0.125 0.875 19 N -0.367 5.367 20 C -0.071 4.071 21 C -0.159 4.159 22 C -0.189 4.189 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.045 0.955 31 H -0.023 1.023 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.013 3.185 5.549 14.501 hybrid contribution 0.852 0.303 -1.645 1.877 sum -12.162 3.488 3.903 13.240 Atomic orbital electron populations 1.21990 0.92981 1.01887 1.02492 1.21575 0.96191 0.91710 0.93797 1.22317 1.00080 0.98698 1.02054 1.62480 1.12174 1.48411 1.00648 1.19521 0.83233 0.93110 0.96440 1.21477 0.91510 1.22143 1.19799 0.92837 1.25774 0.96741 0.98555 0.98430 1.70082 1.00733 1.44240 1.42369 0.85567 0.77621 0.79370 0.79170 1.20265 1.20983 1.19149 1.23114 0.97202 0.95191 0.90204 0.93302 1.23864 0.94867 1.02217 0.97337 1.22819 0.93218 0.95215 0.90868 0.87491 1.58592 1.28015 1.06296 1.43818 1.21969 0.95000 0.95928 0.94199 1.21263 1.01400 0.93554 0.99695 1.21719 0.97479 1.00314 0.99401 0.90771 0.91873 0.92873 0.92874 0.95464 0.91322 0.92171 0.95490 1.02322 0.93095 0.90188 0.89834 0.83680 0.84154 0.94330 0.93139 0.92659 0.91753 0.92391 0.95464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.26 71.98 0.59 -3.25 16 2 C 0.08 2.86 2.85 44.91 0.13 2.99 16 3 C -0.17 -6.14 8.59 71.98 0.62 -5.52 16 4 N -0.51 -21.15 3.81 -847.36 -3.23 -24.38 16 5 C 0.20 10.57 3.75 85.56 0.32 10.89 16 6 C -0.51 -29.04 8.52 25.60 0.22 -28.82 16 7 H 0.05 3.04 7.53 -2.91 -0.02 3.02 16 8 C 0.00 0.14 5.46 84.66 0.46 0.60 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 10 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.05 1.77 2.06 45.44 0.09 1.86 16 15 H 0.05 1.72 6.16 -2.39 -0.01 1.70 16 16 C -0.14 -3.64 4.83 31.17 0.15 -3.49 16 17 C 0.09 2.25 4.48 45.50 0.20 2.45 16 18 H 0.11 2.39 7.96 -2.39 -0.02 2.37 16 19 N -0.84 -17.96 9.29 -166.24 -1.54 -19.51 16 20 C -0.07 -2.28 0.71 -51.66 -0.04 -2.32 16 21 C -0.10 -3.69 7.23 71.98 0.52 -3.17 16 22 C -0.13 -4.46 9.06 71.98 0.65 -3.81 16 23 H 0.07 1.86 4.63 -2.39 -0.01 1.85 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.31 7.17 -2.38 -0.02 2.29 16 27 H 0.03 1.15 6.30 -2.39 -0.02 1.13 16 28 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.06 1.93 6.28 -2.39 -0.02 1.92 16 30 H 0.03 1.51 3.91 -2.38 -0.01 1.50 16 31 H -0.04 -2.36 5.98 -2.39 -0.01 -2.38 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.08 1.72 6.83 -2.38 -0.02 1.70 16 34 H 0.08 2.24 7.37 -2.39 -0.02 2.22 16 35 H 0.35 5.66 9.08 -89.69 -0.81 4.84 16 36 H 0.34 7.53 7.22 -89.70 -0.65 6.89 16 37 H 0.04 1.75 5.52 -2.39 -0.01 1.74 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.88 6.48 -2.39 -0.02 1.87 16 40 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.03 1.10 6.93 -2.39 -0.02 1.08 16 Total: -1.00 -63.26 305.35 1.02 -62.24 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.44 Total: 22.38 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.93 Total: -31.59 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.48 Total: -100.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -63.26 1.02 -62.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.622 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds