Wall clock time and date at job start Mon Mar 30 2020 04:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 N 1.46897 * 109.47289 * 120.00134 * 2 1 3 5 5 C 1.46894 * 110.99944 * 162.29773 * 4 2 1 6 6 C 1.50697 * 109.47385 * 287.59228 * 5 4 2 7 7 H 1.08001 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00228 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99680 * 180.27874 * 8 6 5 10 10 Si 1.86795 * 120.00106 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47015 * 90.00115 * 10 8 6 12 12 H 1.48494 * 109.47624 * 210.00826 * 10 8 6 13 13 H 1.48505 * 109.47261 * 330.00717 * 10 8 6 14 14 C 1.46893 * 110.99819 * 286.25313 * 4 2 1 15 15 H 1.08998 * 112.85448 * 297.71589 * 14 4 2 16 16 C 1.53786 * 113.61623 * 69.02662 * 14 4 2 17 17 C 1.53780 * 87.08195 * 89.11569 * 16 14 4 18 18 H 1.09006 * 113.61106 * 270.88644 * 17 16 14 19 19 N 1.46898 * 113.69176 * 139.99295 * 17 16 14 20 20 C 1.53784 * 87.08159 * 25.43425 * 17 16 14 21 21 C 1.52998 * 113.60934 * 220.01964 * 20 17 16 22 22 C 1.52998 * 113.68819 * 89.12917 * 20 17 16 23 23 H 1.09001 * 109.46968 * 329.31469 * 1 2 3 24 24 H 1.09002 * 109.47167 * 89.31200 * 1 2 3 25 25 H 1.08993 * 109.47235 * 209.31269 * 1 2 3 26 26 H 1.09006 * 109.46984 * 240.00275 * 2 1 3 27 27 H 1.09003 * 109.46818 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47387 * 299.99851 * 3 2 1 29 29 H 1.08996 * 109.47365 * 59.99850 * 3 2 1 30 30 H 1.09007 * 109.46938 * 167.59520 * 5 4 2 31 31 H 1.08997 * 109.47736 * 47.59671 * 5 4 2 32 32 H 0.97007 * 119.99329 * 179.72186 * 9 8 6 33 33 H 1.08997 * 113.61337 * 203.66460 * 16 14 4 34 34 H 1.08998 * 113.61264 * 334.56580 * 16 14 4 35 35 H 1.00904 * 110.99956 * 82.46259 * 19 17 16 36 36 H 1.00893 * 111.00181 * 206.41329 * 19 17 16 37 37 H 1.09005 * 109.46687 * 176.96310 * 21 20 17 38 38 H 1.09002 * 109.47491 * 296.95368 * 21 20 17 39 39 H 1.09003 * 109.47443 * 56.96479 * 21 20 17 40 40 H 1.08996 * 109.47022 * 322.46010 * 22 20 17 41 41 H 1.08993 * 109.47129 * 82.46699 * 22 20 17 42 42 H 1.09006 * 109.46491 * 202.46463 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4269 -1.0840 1.0435 6 6 3.5245 -2.2310 0.0709 7 1 2.6305 -2.6290 -0.3861 8 6 4.7550 -2.7723 -0.2355 9 7 4.8406 -3.7696 -1.0885 10 14 6.3012 -2.0834 0.5543 11 1 6.5751 -2.8084 1.8210 12 1 7.4489 -2.2547 -0.3723 13 1 6.1089 -0.6393 0.8423 14 6 1.8333 0.1356 2.3983 15 1 2.3948 1.0690 2.3596 16 6 0.3596 0.3172 2.7985 17 6 0.5123 -0.9609 3.6400 18 1 0.2895 -1.8751 3.0897 19 7 -0.1693 -0.8968 4.9397 20 6 2.0139 -0.6377 3.7153 21 6 2.9129 -1.8688 3.5848 22 6 2.3926 0.2516 4.9013 23 1 -0.3633 0.8838 0.5244 24 1 -0.3633 0.0123 -1.0276 25 1 -0.3633 -0.8960 0.5031 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.8275 -1.3917 2.0095 31 1 3.9999 -0.2374 0.6655 32 1 5.7067 -4.1478 -1.3071 33 1 0.1758 1.2120 3.3931 34 1 -0.3353 0.2111 1.9655 35 1 -1.1498 -1.1151 4.8449 36 1 0.2736 -1.5065 5.6107 37 1 3.9577 -1.5581 3.5928 38 1 2.7283 -2.5438 4.4204 39 1 2.6935 -2.3814 2.6481 40 1 1.6102 0.9928 5.0639 41 1 2.5030 -0.3623 5.7950 42 1 3.3344 0.7579 4.6895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405258735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:26 Heat of formation + Delta-G solvation = 26.007079 kcal Electronic energy + Delta-G solvation = -19247.771419 eV Core-core repulsion = 16649.511007 eV Total energy + Delta-G solvation = -2598.260412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60382 -37.71611 -34.97772 -33.51797 -32.19313 -31.20850 -28.62326 -28.28208 -27.84778 -24.18920 -23.64844 -22.88688 -20.87355 -18.90454 -18.24499 -17.10408 -16.80194 -16.43531 -16.14034 -15.71908 -15.29044 -14.84388 -14.64707 -14.49267 -14.02544 -13.82004 -13.44849 -13.39391 -13.12739 -12.89494 -12.71330 -12.58800 -12.35989 -12.24982 -12.04604 -11.91184 -11.73507 -11.58955 -11.40752 -11.14271 -10.87214 -10.57787 -10.47916 -9.51298 -8.81475 -8.26069 -6.25070 1.30553 1.32358 1.42311 2.33588 3.07566 3.18711 3.67937 3.72835 3.81314 4.01408 4.12432 4.29142 4.32841 4.45537 4.57309 4.65345 4.72286 4.77237 4.80078 4.90107 4.91647 4.94533 4.98698 5.06357 5.11334 5.15821 5.17964 5.26723 5.33896 5.40927 5.43722 5.53015 5.61321 5.67715 5.78000 6.11645 6.40490 6.55229 6.73553 6.79132 6.82744 7.37063 8.90985 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.009524 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.552215 B = 2939.082296 C = 3520.095683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 C -0.170 4.170 4 N -0.509 5.509 5 C 0.146 3.854 6 C -0.497 4.497 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.933 3.067 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.256 1.256 14 C 0.056 3.944 15 H 0.040 0.960 16 C -0.127 4.127 17 C 0.088 3.912 18 H 0.045 0.955 19 N -0.831 5.831 20 C -0.074 4.074 21 C -0.145 4.145 22 C -0.107 4.107 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.063 0.937 31 H -0.028 1.028 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.345 0.655 36 H 0.343 0.657 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 10.083 11.207 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 C -0.229 4.229 4 N -0.232 5.232 5 C 0.019 3.981 6 C -0.535 4.535 7 H 0.053 0.947 8 C -0.187 4.187 9 N -0.592 5.592 10 Si 0.758 3.242 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.180 1.180 14 C -0.054 4.054 15 H 0.058 0.942 16 C -0.165 4.165 17 C -0.023 4.023 18 H 0.062 0.938 19 N -0.362 5.362 20 C -0.074 4.074 21 C -0.202 4.202 22 C -0.164 4.164 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.081 0.919 31 H -0.010 1.010 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.381 10.305 11.185 17.365 hybrid contribution 1.478 -0.694 -0.680 1.768 sum -6.903 9.612 10.504 15.823 Atomic orbital electron populations 1.22021 0.93293 1.02051 1.01488 1.21598 0.96353 0.92379 0.93001 1.22367 1.00044 0.97653 1.02809 1.62042 1.19766 1.39879 1.01542 1.20582 0.86491 0.93269 0.97760 1.21224 0.92997 1.15216 1.24092 0.94699 1.25715 1.02152 0.95157 0.95709 1.70052 1.25635 1.26975 1.36527 0.85915 0.79277 0.80025 0.79019 1.18750 1.21017 1.18017 1.22716 0.98195 0.94137 0.90305 0.94224 1.23447 0.95322 0.98065 0.99644 1.22499 0.93012 0.96623 0.90167 0.93760 1.58898 1.07045 1.61473 1.08735 1.21997 0.94823 0.95597 0.95030 1.22055 0.98137 0.97951 1.02036 1.21340 1.00563 0.98862 0.95652 0.90515 0.92470 0.92545 0.93202 0.95037 0.91168 0.91083 0.91906 1.01009 0.92715 0.88736 0.89017 0.84273 0.84436 0.94012 0.92749 0.91725 0.90944 0.91803 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 7.75 71.98 0.56 -3.30 16 2 C 0.08 2.80 2.77 44.92 0.12 2.92 16 3 C -0.17 -5.43 8.17 71.98 0.59 -4.85 16 4 N -0.51 -20.32 3.65 -847.36 -3.09 -23.42 16 5 C 0.15 6.95 2.55 85.56 0.22 7.16 16 6 C -0.50 -28.71 8.79 25.60 0.23 -28.49 16 7 H 0.03 2.26 7.94 -2.91 -0.02 2.24 16 8 C 0.01 0.54 5.47 84.65 0.46 1.01 16 9 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 10 Si 0.93 44.89 27.47 68.60 1.88 46.78 16 11 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 14 C 0.06 1.81 1.81 45.45 0.08 1.89 16 15 H 0.04 1.32 6.52 -2.39 -0.02 1.31 16 16 C -0.13 -3.34 6.67 31.12 0.21 -3.13 16 17 C 0.09 2.38 4.30 45.44 0.20 2.58 16 18 H 0.04 1.43 8.10 -2.38 -0.02 1.41 16 19 N -0.83 -17.08 8.59 -166.49 -1.43 -18.51 16 20 C -0.07 -2.19 1.33 -51.65 -0.07 -2.26 16 21 C -0.14 -5.09 7.29 71.98 0.53 -4.56 16 22 C -0.11 -2.64 8.39 71.98 0.60 -2.03 16 23 H 0.08 1.86 6.20 -2.39 -0.01 1.85 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.77 7.41 -2.39 -0.02 1.75 16 26 H 0.05 2.26 7.09 -2.38 -0.02 2.24 16 27 H 0.03 1.12 6.88 -2.39 -0.02 1.11 16 28 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.07 2.00 6.32 -2.39 -0.02 1.99 16 30 H 0.06 2.93 2.97 -2.38 -0.01 2.93 16 31 H -0.03 -1.38 5.77 -2.39 -0.01 -1.39 16 32 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 33 H 0.09 2.23 7.66 -2.39 -0.02 2.21 16 34 H 0.09 2.37 3.63 -2.39 -0.01 2.36 16 35 H 0.34 6.00 9.08 -89.69 -0.81 5.19 16 36 H 0.34 6.50 9.05 -89.70 -0.81 5.69 16 37 H 0.04 1.51 6.99 -2.38 -0.02 1.49 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 2.78 5.56 -2.39 -0.01 2.76 16 40 H 0.07 1.67 7.15 -2.39 -0.02 1.65 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -64.63 303.06 0.72 -63.91 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.66 Total: 24.06 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.72 Total: -33.06 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -4.22 Total: -101.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -64.63 0.72 -63.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405258735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.915 kcal (2) G-P(sol) polarization free energy of solvation -64.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds